Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006570

Physical Location & Seq

Genomic Coordinates Forward (+)

15246383 .. 15247009

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G182800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

TCATTGCTTCTTCTTCTTCTTCCCTTGCCCTCCCATTGTGCAGACCCTGATCCTTTACTAGACTTGTGTGTGGCAAACTTGACTGCCTCCACATCATCTAGCTACTTCCCCTGCAAACTCCCCTCGGAGGTTACTGCAGATGACTTTGTCTTCGACGGGCTGAGCAAGCAAGGTAACGTCACGAACCTCTTTGGGGTGGCTGTGACAACCGGGAATGTCCTTTCGTTCCCGGGGCTCAACACTCTCGGGTTATCCATGAACAGAGTTGACTTTGGGCCAGGTGGGATTAACCCGCCTCACTCGCACCCTCGTGCTAGTGAGATTGGGATTGTCATTGAAGGGACGATCCTTTCAGGGATTGTGACAACTAAGAATGTGTACTACGGTAAGGTCGCGACTGCGGGGCAAGTGTTTGCGGTTCCAAGGGGACTTGTTCACTTTGAGCTAAATCTTGGGCAAACAAAGGCCCTTTTCTTCACAGCTTTCAACAGCCACTTGCCTGGCTCCACTGTTCTTCCTCTAAGTCTATTTGCTGCGGCCCCTTCAATCCCAATGGAAGTGCTGACCAAGACCTATCTAGTGGATGAAGATGCGATCAACGCCATGAAATCCAAGTTCGTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

209

Amino Acids

21.98

Weight (kDa)

5.63

Isoelectric Point (pI)

18.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18970 AT1G18980
fragaria_vesca	FvH4_5g15981 FvH4_5g15981
malus_domestica	MD14G1190200.v1.1
prunus_persica	Prupe.5G182600_v2.0.a1 Prupe.5G182800_v2.0.a1 Prupe.5G182900_v2.0.a1 Prupe.5G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180091
rosa_laevigata	RLG00000005294 RLG00000005295
rosa_multiflora	Rmu_sc0017616.1_g000004 Rmu_sc0017616.1_g000005 Rmu_ssc0000119.1_g000030
rosa_roxburghii	Rroxscaffold_3G00273140
rosa_rugosa	Rorug06G0430500.1 Rorug06G0430600
rosa_samantha	Rh7AG030800 Rh7AG030900 Rh7BG030700 Rh7BG030800 Rh7CG032500 Rh7CG032600 Rh7DG031500
rosa_wichuraiana	Rw7G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	395
AciI	CCGC	4 cut(s)	293, 401, 416, 536
AclWI	GGATC	2 cut(s)	44, 340
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	2 cut(s)	127, 193
AgsI	TTSAA	3 cut(s)	338, 487, 546
AjnI	CCWGG	2 cut(s)	277, 499
AleI	CACNNNNGTG	1 cut(s)	309
AluBI	AGCT	3 cut(s)	102, 445, 482
AluI	AGCT	3 cut(s)	102, 445, 482
AlwI	GGATC	2 cut(s)	44, 340
AlwNI	CAGNNNCTG	1 cut(s)	47
Ama87I	CYCGRG	2 cut(s)	229, 245
AoxI	GGCC	3 cut(s)	275, 465, 537
ApeKI	GCWGC	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AspS9I	GGNCC	3 cut(s)	275, 466, 538
AsuC2I	CCSGG	3 cut(s)	211, 230, 231
AvaI	CYCGRG	2 cut(s)	229, 245
BanII	GRGCYC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	520
BciT130I	CCWGG	2 cut(s)	279, 501
BcnI	CCSGG	3 cut(s)	211, 230, 231
BfaI	CTAG	4 cut(s)	59, 99, 315, 578
BfmI	CTRYAG	1 cut(s)	135
BisI	GCNGC	2 cut(s)	534, 537
BlpI	GCTNAGC	1 cut(s)	161
BlsI	GCNGC	2 cut(s)	535, 538
Bme1390I	CCNGG	5 cut(s)	211, 230, 231, 279, 501
BmeT110I	CYCGRG	2 cut(s)	229, 245
BmgT120I	GGNCC	3 cut(s)	275, 466, 538
BmiI	GGNNCC	3 cut(s)	420, 505, 540
BmrFI	CCNGG	5 cut(s)	211, 230, 231, 279, 501
BmsI	GCATC	1 cut(s)	580
BpiI	GAAGAC	1 cut(s)	142
Bpu1102I	GCTNAGC	1 cut(s)	161
BpuMI	CCSGG	3 cut(s)	211, 230, 231
BsaJI	CCNNGG	4 cut(s)	123, 229, 230, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 193
BseBI	CCWGG	2 cut(s)	279, 501
BseDI	CCNNGG	4 cut(s)	123, 229, 230, 422
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	2 cut(s)	127, 193
BseMII	CTCAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	520
BsgI	GTGCAG	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	3 cut(s)	277, 467, 539
BsiHKCI	CYCGRG	2 cut(s)	229, 245
BsiSI	CCGG	2 cut(s)	210, 230
BslFI	GGGAC	2 cut(s)	355, 441
BslI	CCNNNNNNNGG	2 cut(s)	127, 193
BsmFI	GGGAC	2 cut(s)	355, 441
BsnI	GGCC	3 cut(s)	277, 467, 539
BsoBI	CYCGRG	2 cut(s)	229, 245
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	49, 345, 594
Bsp1720I	GCTNAGC	1 cut(s)	161
Bsp68I	TCGCGA	1 cut(s)	395
BspACI	CCGC	4 cut(s)	293, 401, 416, 536
BspANI	GGCC	3 cut(s)	277, 467, 539
BspCNI	CTCAG	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	3 cut(s)	420, 505, 540
BspMAI	CTGCAG	1 cut(s)	139
BspPI	GGATC	2 cut(s)	44, 340
BssECI	CCNNGG	4 cut(s)	123, 229, 230, 422
BssMI	GATC	3 cut(s)	49, 345, 594
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	422
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	279, 501
Bst4CI	ACNGT	2 cut(s)	386, 511
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	3 cut(s)	161, 369, 521
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	1 cut(s)	395
BstKTI	GATC	3 cut(s)	52, 348, 597
BstMBI	GATC	3 cut(s)	49, 345, 594
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 301, 599
BstNI	CCWGG	2 cut(s)	279, 501
BstSCI	CCNGG	5 cut(s)	209, 228, 229, 277, 499
BstSFI	CTRYAG	1 cut(s)	135
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	500
BsuRI	GGCC	3 cut(s)	277, 467, 539
BtsCI	GGATG	1 cut(s)	589
BtsIMutI	CAGTG	1 cut(s)	507
BtuMI	TCGCGA	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	167
CaiI	CAGNNNCTG	1 cut(s)	47
Cfr13I	GGNCC	3 cut(s)	275, 466, 538
Cfr9I	CCCGGG	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	2 cut(s)	256, 604
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	3 cut(s)	161, 369, 521
DpnI	GATC	3 cut(s)	51, 347, 596
DpnII	GATC	3 cut(s)	49, 345, 594
Eco130I	CCWWGG	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	237
Eco88I	CYCGRG	2 cut(s)	229, 245
EcoO109I	RGGNCCY	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	277, 499
EcoT14I	CCWWGG	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	2 cut(s)	259, 607
FaiI	YATR	2 cut(s)	257, 605
FalI	AAGNNNNNCTT	1 cut(s)	605
FaqI	GGGAC	2 cut(s)	355, 441
FatI	CATG	2 cut(s)	255, 603
FauI	CCCGC	2 cut(s)	300, 394
Fnu4HI	GCNGC	2 cut(s)	534, 537
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	2 cut(s)	534, 537
FspBI	CTAG	4 cut(s)	59, 99, 315, 578
GluI	GCNGC	2 cut(s)	534, 537
HaeIII	GGCC	3 cut(s)	277, 467, 539
HapII	CCGG	2 cut(s)	210, 230
Hin1II	CATG	2 cut(s)	259, 607
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HpaII	CCGG	2 cut(s)	210, 230
Hpy166II	GTNNAC	3 cut(s)	268, 379, 436
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	181, 394
Hpy8I	GTNNAC	3 cut(s)	268, 379, 436
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	2 cut(s)	332, 552
HpyCH4III	ACNGT	2 cut(s)	386, 511
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	41, 114, 137
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 301, 599
HpyF3I	CTNAG	3 cut(s)	161, 369, 521
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	259, 607
Kzo9I	GATC	3 cut(s)	49, 345, 594
LmnI	GCTCC	1 cut(s)	509
LpnPI	CCDG	9 cut(s)	60, 124, 223, 243, 264, 291, 339, 486, 513
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	4 cut(s)	59, 99, 315, 578
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	5 cut(s)	130, 173, 178, 202, 361
MalI	GATC	3 cut(s)	51, 347, 596
MboI	GATC	3 cut(s)	49, 345, 594
MboII	GAAGA	7 cut(s)	5, 8, 11, 142, 466, 506, 599
MhlI	GDGCHC	1 cut(s)	237
MnlI	CCTC	8 cut(s)	40, 97, 121, 133, 197, 306, 318, 528
MseI	TTAA	2 cut(s)	288, 625
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	2 cut(s)	210, 230
MspR9I	CCNGG	5 cut(s)	211, 230, 231, 279, 501
MvaI	CCWGG	2 cut(s)	279, 501
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	3 cut(s)	166, 301, 599
NciI	CCSGG	3 cut(s)	211, 230, 231
NdeII	GATC	3 cut(s)	49, 345, 594
NlaIII	CATG	2 cut(s)	259, 607
NlaIV	GGNNCC	3 cut(s)	420, 505, 540
NmuCI	GTSAC	3 cut(s)	178, 202, 361
NruI	TCGCGA	1 cut(s)	395
OliI	CACNNNNGTG	1 cut(s)	309
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	535, 538
Psp6I	CCWGG	2 cut(s)	277, 499
PspGI	CCWGG	2 cut(s)	277, 499
PspN4I	GGNNCC	3 cut(s)	420, 505, 540
PspPI	GGNCC	3 cut(s)	275, 466, 538
PstI	CTGCAG	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	146
RruI	TCGCGA	1 cut(s)	395
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	288, 625
SatI	GCNGC	2 cut(s)	534, 537
Sau3AI	GATC	3 cut(s)	49, 345, 594
Sau96I	GGNCC	3 cut(s)	275, 466, 538
ScrFI	CCNGG	5 cut(s)	211, 230, 231, 279, 501
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	1 cut(s)	135
SmaI	CCCGGG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	309
SsiI	CCGC	4 cut(s)	293, 401, 416, 536
SspMI	CTAG	4 cut(s)	59, 99, 315, 578
StyD4I	CCNGG	5 cut(s)	209, 228, 229, 277, 499
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	2 cut(s)	386, 511
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	153
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	288, 625
Tru9I	TTAA	2 cut(s)	288, 625
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	3 cut(s)	178, 202, 361
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	3 cut(s)	178, 202, 361
TspDTI	ATGAA	3 cut(s)	272, 600, 620
TspMI	CCCGGG	1 cut(s)	229
TspRI	CASTG	1 cut(s)	514
Tth111I	GACNNNGTC	1 cut(s)	146
XmaI	CCCGGG	1 cut(s)	229
XspI	CTAG	4 cut(s)	59, 99, 315, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.