Rh7AG030900

Germin-like protein subfamily T member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
2132598 .. 2132867
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG030900.1

Sequence Viewer

Length: 270 bp
ATGGTAACCTCATCACCAAGCTATCTATGCTGCTTTGCAGTTTCAGTACTTCTTTCCTTGCCCTTACATTCTGCAGACCCTAATCAATTACAAGACTTCTGTGTTGCAGATTTCACTCGTGCCTCCAAGTCCGACAATGTCTTCCCCTGCAAGCCCATCGCAGAGGTTACTTCTGATGACTTTGTCTTTGATGGTGCACACGAGAAAGGGAACATAACAGATATGTTTGGGCTGAATGTGACGGGGTTAACTTTGCCCCGGGTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

9.61

Weight (kDa)

4.51

Isoelectric Point (pI)

23.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AfaI GTAC 1 cut(s) 48
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw21I GWGCWC 1 cut(s) 199
Alw44I GTGCAC 1 cut(s) 195
Ama87I CYCGRG 1 cut(s) 258
ApaLI GTGCAC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AsuC2I CCSGG 2 cut(s) 259, 260
AsuHPI GGTGA 1 cut(s) 6
AvaI CYCGRG 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 262
BauI CACGAG 2 cut(s) 117, 200
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 164, 185
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BcnI CCSGG 2 cut(s) 259, 260
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 2 cut(s) 259, 260
BmeT110I CYCGRG 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 2 cut(s) 259, 260
BpiI GAAGAC 1 cut(s) 133
BpuMI CCSGG 2 cut(s) 259, 260
BsaJI CCNNGG 2 cut(s) 257, 258
BseDI CCNNGG 2 cut(s) 257, 258
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 257, 258
BssSI CACGAG 2 cut(s) 117, 200
Bst2BI CACGAG 2 cut(s) 117, 200
BstC8I GCNNGC 1 cut(s) 152
BstEII GGTNACC 1 cut(s) 4
BstMWI GCNNNNNNNGC 2 cut(s) 27, 262
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 2 cut(s) 257, 258
BstSFI CTRYAG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 133
BtgZI GCGATG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 152
Cfr9I CCCGGG 1 cut(s) 258
Csp6I GTAC 1 cut(s) 47
CviJI RGCY 3 cut(s) 21, 154, 232
CviKI_1 RGCY 3 cut(s) 21, 154, 232
CviQI GTAC 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
FaiI YATR 3 cut(s) 28, 215, 224
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 31
HapII CCGG 1 cut(s) 259
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HpaI GTTAAC 1 cut(s) 249
HpaII CCGG 1 cut(s) 259
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 197, 249
Hpy188I TCNGA 2 cut(s) 133, 175
Hpy8I GTNNAC 2 cut(s) 197, 249
HpyCH4V TGCA 5 cut(s) 38, 74, 107, 150, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 262
KspAI GTTAAC 1 cut(s) 249
LpnPI CCDG 1 cut(s) 160
Lsp1109I GCAGC 1 cut(s) 17
MaeIII GTNAC 3 cut(s) 4, 166, 238
MboII GAAGA 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 3 cut(s) 19, 133, 157
MseI TTAA 1 cut(s) 248
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 2 cut(s) 259, 260
MwoI GCNNNNNNNGC 2 cut(s) 27, 262
NciI CCSGG 2 cut(s) 259, 260
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 238
PflFI GACNNNGTC 2 cut(s) 137, 182
PkrI GCNGC 1 cut(s) 32
PspEI GGTNACC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 264
PstI CTGCAG 1 cut(s) 76
PsyI GACNNNGTC 2 cut(s) 137, 182
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 48
ScrFI CCNGG 2 cut(s) 259, 260
SduI GDGCHC 1 cut(s) 199
SetI ASST 3 cut(s) 11, 23, 168
SfcI CTRYAG 1 cut(s) 72
SmaI CCCGGG 1 cut(s) 260
Sse9I AATT 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 257, 258
TasI AATT 1 cut(s) 86
TatI WGTACW 1 cut(s) 46
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 238
TspMI CCCGGG 1 cut(s) 258
Tth111I GACNNNGTC 2 cut(s) 137, 182
VneI GTGCAC 1 cut(s) 195
XmaI CCCGGG 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.