Rmu_sc0017616.1_g000005

Germin-like protein subfamily T member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017616.1
OG0006570
Physical Location & Seq
Forward (+)
20048 .. 20317
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017616.1_g000005.1.cds

Sequence Viewer

Length: 270 bp
atggtaacctcatcaccaagctacctatgctgctttgcagtttcagtacttctttccttgcccttacattctgcagaccctgatcaattacaagacttctgtgttgcagatttcacttgtgcctccaagtccgacaatgtcttcccctgcaagcccatcgcagaggttacttctgatgactttgtctttgatggtgcacgcgagaaagggaacatcacagatatgttcgagctgaatgtgacggggttaactttgccccgggtgccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

89

Amino Acids

9.65

Weight (kDa)

4.17

Isoelectric Point (pI)

24.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AccII CGCG 1 cut(s) 201
AfaI GTAC 1 cut(s) 48
AluBI AGCT 2 cut(s) 21, 232
AluI AGCT 2 cut(s) 21, 232
Alw21I GWGCWC 1 cut(s) 199
Alw44I GTGCAC 1 cut(s) 195
AlwNI CAGNNNCTG 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 258
ApaLI GTGCAC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AsuC2I CCSGG 2 cut(s) 259, 260
AsuHPI GGTGA 1 cut(s) 6
AvaI CYCGRG 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 164, 185
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BclI TGATCA 1 cut(s) 82
BcnI CCSGG 2 cut(s) 259, 260
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 2 cut(s) 259, 260
BmeT110I CYCGRG 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 2 cut(s) 259, 260
BpiI GAAGAC 1 cut(s) 133
BpuMI CCSGG 2 cut(s) 259, 260
BsaJI CCNNGG 2 cut(s) 257, 258
BseDI CCNNGG 2 cut(s) 257, 258
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 258
BsiSI CCGG 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 1 cut(s) 82
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 257, 258
BssMI GATC 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 152, 199
BstEII GGTNACC 1 cut(s) 4
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 27, 262
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 2 cut(s) 257, 258
BstSFI CTRYAG 1 cut(s) 72
BstSLI GKGCMC 1 cut(s) 199
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 133
BtgZI GCGATG 1 cut(s) 142
Cac8I GCNNGC 2 cut(s) 152, 199
CaiI CAGNNNCTG 1 cut(s) 80
Cfr9I CCCGGG 1 cut(s) 258
Csp6I GTAC 1 cut(s) 47
CviJI RGCY 3 cut(s) 21, 154, 232
CviKI_1 RGCY 3 cut(s) 21, 154, 232
CviQI GTAC 1 cut(s) 47
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
FaiI YATR 2 cut(s) 28, 224
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 31
HapII CCGG 1 cut(s) 259
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HpaI GTTAAC 1 cut(s) 249
HpaII CCGG 1 cut(s) 259
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 197, 249
Hpy188I TCNGA 2 cut(s) 133, 175
Hpy8I GTNNAC 2 cut(s) 197, 249
HpyCH4V TGCA 5 cut(s) 38, 74, 107, 150, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 262
Ksp22I TGATCA 1 cut(s) 82
KspAI GTTAAC 1 cut(s) 249
Kzo9I GATC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 93, 160
Lsp1109I GCAGC 1 cut(s) 17
MaeIII GTNAC 3 cut(s) 4, 166, 238
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 3 cut(s) 19, 133, 157
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 2 cut(s) 259, 260
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 27, 262
NciI CCSGG 2 cut(s) 259, 260
NdeII GATC 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 238
PflFI GACNNNGTC 2 cut(s) 137, 182
PkrI GCNGC 1 cut(s) 32
PspEI GGTNACC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 264
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 80
PsyI GACNNNGTC 2 cut(s) 137, 182
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 1 cut(s) 82
ScaI AGTACT 1 cut(s) 48
ScrFI CCNGG 2 cut(s) 259, 260
SduI GDGCHC 1 cut(s) 199
SetI ASST 5 cut(s) 11, 23, 27, 168, 234
SfcI CTRYAG 1 cut(s) 72
SmaI CCCGGG 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 221
Sse9I AATT 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 257, 258
TaqI TCGA 1 cut(s) 228
TasI AATT 1 cut(s) 86
TatI WGTACW 1 cut(s) 46
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 238
TspMI CCCGGG 1 cut(s) 258
Tth111I GACNNNGTC 2 cut(s) 137, 182
VneI GTGCAC 1 cut(s) 195
XmaI CCCGGG 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.