Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006570

Physical Location & Seq

Genomic Coordinates Reverse (-)

65019800 .. 65020474

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTTGACCTCATCAGGCTTAAGCTTCCACCAGCTATCCTGCCTCACAATTTTGGTACTGCTTCTTCTTCCCCTGCCCTCCCATTCCGCAGACCCTGATCCATTACAAGACTTCTGTGTCGCAGATGTGAGTGCCTCCCCATCAGTTAATGGCTTTCCTTGCAAGGCCTCATCGCAGATCACCTCAGATGATTTTTTCTTTGACGGGCTGAGCAAAGAAGGGAACACAACCAATCTGTATAAGGCGACTGTAACAGCTGGGAATGTCCTTGCATTTCCCGGGCTGAACACCCTTGGGATATCGATGAACAGAGTTGACTTTGCTCCTGGTGGACTCAATCCACCACACTCACACCCTCGTGCAAGTGAGTCTGGGGTGGTCATTAAAGGAAAGCTGCTTGTGGGATTTGTGACAACTAACAATGTGTATTACTCCAAGGTCTTGAGTGCTGGGCAGATGTTTGTGGTTCCGAGGGGACTTGTTCACTTTCAGCTAAACGTTGGAAAAGGGAAGGCCCTTGCCTACACAGCTTTCAACAGCCACTTACCAGGCTCTTCTGTGCTTTCTTTTAATCTGTTTGGTTCGATACCTTCCATCCCTGATGCAGTGTTAACCAAGGCCTTTCAAGTAGATGATGATGTTATCAACAACATTCGATCCAAGTTTGGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

224

Amino Acids

23.74

Weight (kDa)

7.0

Isoelectric Point (pI)

21.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	69 - 213	3.3e-45	Cupin
Cupin_2	PF07883	104 - 173	9.9e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18970 AT1G18980
fragaria_vesca	FvH4_5g15981 FvH4_5g15981
malus_domestica	MD14G1190200.v1.1
prunus_persica	Prupe.5G182600_v2.0.a1 Prupe.5G182800_v2.0.a1 Prupe.5G182900_v2.0.a1 Prupe.5G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180091
rosa_laevigata	RLG00000005294 RLG00000005295
rosa_multiflora	Rmu_sc0017616.1_g000004 Rmu_sc0017616.1_g000005 Rmu_ssc0000119.1_g000030
rosa_roxburghii	Rroxscaffold_3G00273140
rosa_rugosa	Rorug06G0430500.1 Rorug06G0430600
rosa_samantha	Rh7AG030800 Rh7AG030900 Rh7BG030700 Rh7BG030800 Rh7CG032500 Rh7CG032600 Rh7DG031500
rosa_wichuraiana	Rw7G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AciI	CCGC	1 cut(s)	87
AclI	AACGTT	1 cut(s)	498
AclWI	GGATC	2 cut(s)	92, 651
AfaI	GTAC	1 cut(s)	57
AflII	CTTAAG	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	535, 626
AjnI	CCWGG	2 cut(s)	325, 547
AleI	CACNNNNGTG	1 cut(s)	357
AluBI	AGCT	6 cut(s)	24, 34, 257, 394, 493, 530
AluI	AGCT	6 cut(s)	24, 34, 257, 394, 493, 530
AlwI	GGATC	2 cut(s)	92, 651
AlwNI	CAGNNNCTG	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	3 cut(s)	165, 513, 618
ApeKI	GCWGC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	514
AsuC2I	CCSGG	2 cut(s)	279, 280
AsuHPI	GGTGA	1 cut(s)	172
AvaI	CYCGRG	1 cut(s)	278
BarI	GAAGNNNNNNTAC	2 cut(s)	48, 80
BauI	CACGAG	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	381
BccI	CCATC	2 cut(s)	148, 602
BciT130I	CCWGG	2 cut(s)	327, 549
BcnI	CCSGG	2 cut(s)	279, 280
BfrI	CTTAAG	1 cut(s)	19
BisI	GCNGC	1 cut(s)	395
BlpI	GCTNAGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	396
Bme1390I	CCNGG	4 cut(s)	279, 280, 327, 549
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	4 cut(s)	279, 280, 327, 549
BmsI	GCATC	1 cut(s)	592
Bpu1102I	GCTNAGC	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	463
BpuMI	CCSGG	2 cut(s)	279, 280
Bsa29I	ATCGAT	1 cut(s)	302
BsaJI	CCNNGG	5 cut(s)	278, 292, 435, 470, 615
BseBI	CCWGG	2 cut(s)	327, 549
BseCI	ATCGAT	1 cut(s)	302
BseDI	CCNNGG	5 cut(s)	278, 292, 435, 470, 615
BseGI	GGATG	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	198, 200
BseXI	GCAGC	1 cut(s)	381
BseYI	CCCAGC	2 cut(s)	257, 449
BshFI	GGCC	3 cut(s)	167, 515, 620
BshVI	ATCGAT	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	489
BsnI	GGCC	3 cut(s)	167, 515, 620
BsoBI	CYCGRG	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	97, 177, 656
Bsp1720I	GCTNAGC	1 cut(s)	209
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	3 cut(s)	167, 515, 620
BspCNI	CTCAG	2 cut(s)	197, 201
BspDI	ATCGAT	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	468
BspPI	GGATC	2 cut(s)	92, 651
BspQI	GCTCTTC	1 cut(s)	559
BspTI	CTTAAG	1 cut(s)	19
BssECI	CCNNGG	5 cut(s)	278, 292, 435, 470, 615
BssMI	GATC	3 cut(s)	97, 177, 656
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	3 cut(s)	292, 435, 615
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	327, 549
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	559
BstAFI	CTTAAG	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	184, 209
BstF5I	GGATG	1 cut(s)	594
BstKTI	GATC	3 cut(s)	100, 180, 659
BstMBI	GATC	3 cut(s)	97, 177, 656
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 527
BstNI	CCWGG	2 cut(s)	327, 549
BstSCI	CCNGG	4 cut(s)	277, 278, 325, 547
BstV1I	GCAGC	1 cut(s)	381
Bsu15I	ATCGAT	1 cut(s)	302
BsuRI	GGCC	3 cut(s)	167, 515, 620
BsuTUI	ATCGAT	1 cut(s)	302
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	594
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	612
CaiI	CAGNNNCTG	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	514
Cfr9I	CCCGGG	1 cut(s)	278
ClaI	ATCGAT	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	56
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	184, 209
DpnI	GATC	3 cut(s)	99, 179, 658
DpnII	GATC	3 cut(s)	97, 177, 656
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	559
EarI	CTCTTC	1 cut(s)	559
Eco130I	CCWWGG	3 cut(s)	292, 435, 615
Eco147I	AGGCCT	2 cut(s)	167, 620
Eco32I	GATATC	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	514
EcoRII	CCWGG	2 cut(s)	325, 547
EcoRV	GATATC	1 cut(s)	300
EcoT14I	CCWWGG	3 cut(s)	292, 435, 615
ErhI	CCWWGG	3 cut(s)	292, 435, 615
FaiI	YATR	1 cut(s)	240
FalI	AAGNNNNNCTT	1 cut(s)	653
FaqI	GGGAC	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	1 cut(s)	581
Fsp4HI	GCNGC	1 cut(s)	395
GluI	GCNGC	1 cut(s)	395
GsaI	CCCAGC	2 cut(s)	261, 453
HaeIII	GGCC	3 cut(s)	167, 515, 620
HapII	CCGG	1 cut(s)	279
HincII	GTYRAC	3 cut(s)	6, 316, 612
HindII	GTYRAC	3 cut(s)	6, 316, 612
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	2 cut(s)	333, 368
HpaI	GTTAAC	1 cut(s)	612
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	5 cut(s)	6, 316, 332, 484, 612
Hpy188I	TCNGA	2 cut(s)	187, 471
Hpy188III	TCNNGA	1 cut(s)	442
Hpy8I	GTNNAC	5 cut(s)	6, 316, 332, 484, 612
HpyAV	CCTTC	3 cut(s)	212, 505, 600
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	4 cut(s)	162, 272, 362, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 527
HpyF3I	CTNAG	2 cut(s)	184, 209
HpySE526I	ACGT	1 cut(s)	498
KspAI	GTTAAC	1 cut(s)	612
Kzo9I	GATC	3 cut(s)	97, 177, 656
LguI	GCTCTTC	1 cut(s)	559
LmnI	GCTCC	1 cut(s)	328
Lsp1109I	GCAGC	1 cut(s)	381
LweI	GCATC	1 cut(s)	592
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	250, 409
MalI	GATC	3 cut(s)	99, 179, 658
MboI	GATC	3 cut(s)	97, 177, 656
MboII	GAAGA	3 cut(s)	56, 59, 546
MluCI	AATT	1 cut(s)	48
MlyI	GAGTC	2 cut(s)	327, 377
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	8 cut(s)	19, 53, 88, 145, 178, 193, 366, 465
MseI	TTAA	5 cut(s)	20, 147, 384, 570, 611
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	257
MspCI	CTTAAG	1 cut(s)	19
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	4 cut(s)	279, 280, 327, 549
MvaI	CCWGG	2 cut(s)	327, 549
MwoI	GCNNNNNNNGC	2 cut(s)	159, 527
NciI	CCSGG	2 cut(s)	279, 280
NdeII	GATC	3 cut(s)	97, 177, 656
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	409
OliI	CACNNNNGTG	1 cut(s)	357
PceI	AGGCCT	2 cut(s)	167, 620
PciSI	GCTCTTC	1 cut(s)	559
PkrI	GCNGC	1 cut(s)	396
PleI	GAGTC	2 cut(s)	327, 376
PpsI	GAGTC	2 cut(s)	327, 376
Psp1406I	AACGTT	1 cut(s)	498
Psp6I	CCWGG	2 cut(s)	325, 547
PspFI	CCCAGC	2 cut(s)	257, 449
PspGI	CCWGG	2 cut(s)	325, 547
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	357
SapI	GCTCTTC	1 cut(s)	559
SaqAI	TTAA	5 cut(s)	20, 147, 384, 570, 611
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	3 cut(s)	97, 177, 656
Sau96I	GGNCC	1 cut(s)	514
SchI	GAGTC	2 cut(s)	327, 377
ScrFI	CCNGG	4 cut(s)	279, 280, 327, 549
SfaNI	GCATC	1 cut(s)	592
SmaI	CCCGGG	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	19, 442
SmoI	CTYRAG	2 cut(s)	19, 442
Sse9I	AATT	1 cut(s)	48
SseBI	AGGCCT	2 cut(s)	167, 620
SsiI	CCGC	1 cut(s)	87
StuI	AGGCCT	2 cut(s)	167, 620
StyD4I	CCNGG	4 cut(s)	277, 278, 325, 547
StyI	CCWWGG	3 cut(s)	292, 435, 615
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	3 cut(s)	302, 584, 655
TasI	AATT	1 cut(s)	48
Tru1I	TTAA	5 cut(s)	20, 147, 384, 570, 611
Tru9I	TTAA	5 cut(s)	20, 147, 384, 570, 611
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	320
TspMI	CCCGGG	1 cut(s)	278
TspRI	CASTG	1 cut(s)	612
Vha464I	CTTAAG	1 cut(s)	19
XmaI	CCCGGG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.