Rh7CG032600

Germin-like protein subfamily T member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006570
Physical Location & Seq
Forward (+)
2247718 .. 2247990
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG032600.1

Sequence Viewer

Length: 273 bp
ATGGTAACCTCATCACCAAGCTATCTATGCTGCTTTGCAGTTTCAGTACTTCTTCTTTCCTTGCCCTTACATTCTGCAGACCCTGATCAATTACAAGACTTCTGTGTTGCAGATTTCACTCGTGCCTCCAAGTCCGACAATGTCTTCCCCTGCAAGCCCATCGCAGAGGTTACTTCTGATGACTTTGTCTTTGATGGTGCACGCGAGAAAGGGAACATCACAGATATGTTCGGGCTGAATGTGACGGGGTTAACTTTGCCCCGGGTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

90

Amino Acids

9.76

Weight (kDa)

4.39

Isoelectric Point (pI)

22.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 204
AfaI GTAC 1 cut(s) 48
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw21I GWGCWC 1 cut(s) 202
Alw44I GTGCAC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 261
ApaLI GTGCAC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AsuC2I CCSGG 2 cut(s) 262, 263
AsuHPI GGTGA 1 cut(s) 6
AvaI CYCGRG 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 202
BauI CACGAG 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 167, 188
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BclI TGATCA 1 cut(s) 85
BcnI CCSGG 2 cut(s) 262, 263
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 2 cut(s) 262, 263
BmeT110I CYCGRG 1 cut(s) 261
BmrFI CCNGG 2 cut(s) 262, 263
BpiI GAAGAC 1 cut(s) 136
BpuMI CCSGG 2 cut(s) 262, 263
BsaJI CCNNGG 2 cut(s) 260, 261
BseDI CCNNGG 2 cut(s) 260, 261
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 202
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 262
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 202
Bsp143I GATC 1 cut(s) 85
BspFNI CGCG 1 cut(s) 204
BspMAI CTGCAG 1 cut(s) 79
BssECI CCNNGG 2 cut(s) 260, 261
BssMI GATC 1 cut(s) 85
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
BstC8I GCNNGC 2 cut(s) 155, 202
BstEII GGTNACC 1 cut(s) 4
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 27, 265
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 2 cut(s) 260, 261
BstSFI CTRYAG 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 202
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 155, 202
CaiI CAGNNNCTG 1 cut(s) 83
Cfr9I CCCGGG 1 cut(s) 261
Csp6I GTAC 1 cut(s) 47
CviJI RGCY 3 cut(s) 21, 157, 235
CviKI_1 RGCY 3 cut(s) 21, 157, 235
CviQI GTAC 1 cut(s) 47
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
FaiI YATR 2 cut(s) 28, 227
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 31
HapII CCGG 1 cut(s) 262
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HpaI GTTAAC 1 cut(s) 252
HpaII CCGG 1 cut(s) 262
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 2 cut(s) 200, 252
Hpy188I TCNGA 2 cut(s) 136, 178
Hpy8I GTNNAC 2 cut(s) 200, 252
HpyCH4V TGCA 5 cut(s) 38, 77, 110, 153, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 265
Ksp22I TGATCA 1 cut(s) 85
KspAI GTTAAC 1 cut(s) 252
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 2 cut(s) 96, 163
Lsp1109I GCAGC 1 cut(s) 17
MaeIII GTNAC 3 cut(s) 4, 169, 241
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 2 cut(s) 44, 136
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 3 cut(s) 19, 136, 160
MseI TTAA 1 cut(s) 251
MslI CAYNNNNRTG 1 cut(s) 224
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 2 cut(s) 262, 263
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 27, 265
NciI CCSGG 2 cut(s) 262, 263
NdeII GATC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 241
PflFI GACNNNGTC 2 cut(s) 140, 185
PkrI GCNGC 1 cut(s) 32
PspEI GGTNACC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 83
PsyI GACNNNGTC 2 cut(s) 140, 185
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 1 cut(s) 85
ScaI AGTACT 1 cut(s) 48
ScrFI CCNGG 2 cut(s) 262, 263
SduI GDGCHC 1 cut(s) 202
SetI ASST 3 cut(s) 11, 23, 171
SfcI CTRYAG 1 cut(s) 75
SmaI CCCGGG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 260, 261
TasI AATT 1 cut(s) 89
TatI WGTACW 1 cut(s) 46
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 241
TspMI CCCGGG 1 cut(s) 261
Tth111I GACNNNGTC 2 cut(s) 140, 185
VneI GTGCAC 1 cut(s) 198
XmaI CCCGGG 1 cut(s) 261
ZrmI AGTACT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.