Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006570

Physical Location & Seq

Genomic Coordinates Forward (+)

15256594 .. 15257787

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G183100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAACATGATCACCTCATCCAGCTTAGTCTTCAGCTTGCTATTCTGCCTCATGGTTTCAATGCTTCTTCTTCCCTTGCCCTCCAATGGTGCAGACCCTGATCCGTTACAAGACTTCTGTGTGGCAGATTTGAATGCTTCCACATCAGTTAATGGCTTTCCCTGCAAACCCGTCTCGAAAACTACTTCTGATGACTTCTTCTTTGATGGACTGAGCAAAGAAGGGAATACGAGCAATCCCTTTGGAGCGAACTTAACAGCTGGGAATGTCCTTGCATTTCCTGGCCTCAACACTCTTGGGATATCAATGAACAGAGTTGACTTTGCGCCGGGCGGTATTAATCCGCCCCACTCGCACCCTCGTGCGAGTGAGTCCGGTGTAGTCATTGAAGGGAAGCTCCTTGTAGGGTTTGTGACAACCAACAATGTGTTTTACTCCAAGGTTTTGAGTGCTGGGCAGATGTTTGTGATTCCAAGGGGACTTGTTCACTTTCAGCTGAATGTTGGAGAAGGGAAGGCTCTGGCCTTCACAGCTTTCAACAGTCAATTGCCTGGGGCTGTTGTGCTTCCTTTAACTCTCTTTGCTTCAATGCCTTCGATTCCCGACCAAGTTTTAACTAAGGCCCTTCAAGTAGATAAAGATGTCATCAACACCATCAGATCTAAGTTTGGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

226

Amino Acids

23.85

Weight (kDa)

5.84

Isoelectric Point (pI)

20.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18970 AT1G18980
fragaria_vesca	FvH4_5g15981 FvH4_5g15981
malus_domestica	MD14G1190200.v1.1
prunus_persica	Prupe.5G182600_v2.0.a1 Prupe.5G182800_v2.0.a1 Prupe.5G182900_v2.0.a1 Prupe.5G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180091
rosa_laevigata	RLG00000005294 RLG00000005295
rosa_multiflora	Rmu_sc0017616.1_g000004 Rmu_sc0017616.1_g000005 Rmu_ssc0000119.1_g000030
rosa_roxburghii	Rroxscaffold_3G00273140
rosa_rugosa	Rorug06G0430500.1 Rorug06G0430600
rosa_samantha	Rh7AG030800 Rh7AG030900 Rh7BG030700 Rh7BG030800 Rh7CG032500 Rh7CG032600 Rh7DG031500
rosa_wichuraiana	Rw7G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	333, 344
AclWI	GGATC	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	6 cut(s)	60, 133, 389, 538, 588, 629
AjnI	CCWGG	2 cut(s)	280, 550
AleI	CACNNNNGTG	1 cut(s)	360
AluBI	AGCT	6 cut(s)	24, 36, 260, 397, 496, 533
AluI	AGCT	6 cut(s)	24, 36, 260, 397, 496, 533
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	3 cut(s)	283, 522, 621
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AseI	ATTAAT	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	622
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	4
BauI	CACGAG	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	22
BccI	CCATC	2 cut(s)	200, 662
BciT130I	CCWGG	2 cut(s)	282, 552
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	178
BglII	AGATCT	1 cut(s)	659
Bme1390I	CCNGG	3 cut(s)	282, 330, 552
BmgT120I	GGNCC	1 cut(s)	622
BmrFI	CCNGG	3 cut(s)	282, 330, 552
BpiI	GAAGAC	1 cut(s)	22
BpuMI	CCSGG	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	438, 473, 551
BsaWI	WCCGGW	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	282, 552
BseDI	CCNNGG	3 cut(s)	438, 473, 551
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	203
BseYI	CCCAGC	2 cut(s)	260, 452
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	285, 524, 623
BsiSI	CCGG	2 cut(s)	329, 375
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	492
BsmI	GAATGC	1 cut(s)	139
BsnI	GGCC	3 cut(s)	285, 524, 623
Bsp143I	GATC	3 cut(s)	9, 100, 659
BspACI	CCGC	2 cut(s)	333, 344
BspANI	GGCC	3 cut(s)	285, 524, 623
BspCNI	CTCAG	1 cut(s)	204
BspPI	GGATC	1 cut(s)	95
BssECI	CCNNGG	3 cut(s)	438, 473, 551
BssMI	GATC	3 cut(s)	9, 100, 659
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	2 cut(s)	438, 473
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	2 cut(s)	282, 552
Bst4CI	ACNGT	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	4 cut(s)	25, 212, 618, 663
BstF5I	GGATG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	3 cut(s)	12, 103, 662
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	3 cut(s)	9, 100, 659
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 352, 530
BstNI	CCWGG	2 cut(s)	282, 552
BstSCI	CCNGG	3 cut(s)	280, 328, 550
BstV2I	GAAGAC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BsuRI	GGCC	3 cut(s)	285, 524, 623
BtsCI	GGATG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	98
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	622
CviAII	CATG	2 cut(s)	7, 52
DdeI	CTNAG	4 cut(s)	25, 212, 618, 663
DpnI	GATC	3 cut(s)	11, 102, 661
DpnII	GATC	3 cut(s)	9, 100, 659
EciI	GGCGGA	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	438, 473
Eco32I	GATATC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	622
EcoRII	CCWGG	2 cut(s)	280, 550
EcoRV	GATATC	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	438, 473
ErhI	CCWWGG	2 cut(s)	438, 473
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	2 cut(s)	10, 55
FaiI	YATR	2 cut(s)	8, 53
FalI	AAGNNNNNCTT	1 cut(s)	656
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	2 cut(s)	6, 51
FbaI	TGATCA	1 cut(s)	9
FokI	GGATG	1 cut(s)	4
GlaI	GCGC	1 cut(s)	327
GsaI	CCCAGC	2 cut(s)	264, 456
HaeIII	GGCC	3 cut(s)	285, 524, 623
HapII	CCGG	2 cut(s)	329, 375
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	10, 55
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	371, 469, 598
HpaII	CCGG	2 cut(s)	329, 375
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	2 cut(s)	319, 487
Hpy188I	TCNGA	2 cut(s)	190, 659
Hpy188III	TCNNGA	2 cut(s)	175, 602
Hpy8I	GTNNAC	2 cut(s)	319, 487
HpyAV	CCTTC	7 cut(s)	215, 383, 503, 508, 535, 603, 635
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4V	TGCA	3 cut(s)	92, 165, 275
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 352, 530
HpyF3I	CTNAG	4 cut(s)	25, 212, 618, 663
Hsp92II	CATG	2 cut(s)	10, 55
HspAI	GCGC	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	9, 100, 659
LmnI	GCTCC	2 cut(s)	245, 402
MaeIII	GTNAC	2 cut(s)	105, 412
MalI	GATC	3 cut(s)	11, 102, 661
MboI	GATC	3 cut(s)	9, 100, 659
MboII	GAAGA	4 cut(s)	22, 59, 62, 190
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	1 cut(s)	659
MluCI	AATT	1 cut(s)	545
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	5 cut(s)	25, 59, 91, 296, 369
MseI	TTAA	6 cut(s)	150, 254, 339, 572, 614, 676
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	2 cut(s)	260, 496
MspI	CCGG	2 cut(s)	329, 375
MspR9I	CCNGG	3 cut(s)	282, 330, 552
MunI	CAATTG	1 cut(s)	545
Mva1269I	GAATGC	1 cut(s)	139
MvaI	CCWGG	2 cut(s)	282, 552
MwoI	GCNNNNNNNGC	3 cut(s)	162, 352, 530
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	3 cut(s)	9, 100, 659
NlaIII	CATG	2 cut(s)	10, 55
NmuCI	GTSAC	1 cut(s)	412
OliI	CACNNNNGTG	1 cut(s)	360
PctI	GAATGC	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	469, 598
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PshBI	ATTAAT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	280, 550
PspFI	CCCAGC	2 cut(s)	260, 452
PspGI	CCWGG	2 cut(s)	280, 550
PspPI	GGNCC	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	659
PvuII	CAGCTG	2 cut(s)	260, 496
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	6 cut(s)	150, 254, 339, 572, 614, 676
Sau3AI	GATC	3 cut(s)	9, 100, 659
Sau96I	GGNCC	1 cut(s)	622
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	3 cut(s)	282, 330, 552
SetI	ASST	8 cut(s)	17, 26, 38, 262, 399, 444, 498, 535
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	1 cut(s)	545
SsiI	CCGC	2 cut(s)	333, 344
StyD4I	CCNGG	3 cut(s)	280, 328, 550
StyI	CCWWGG	2 cut(s)	438, 473
TaaI	ACNGT	1 cut(s)	542
TaqI	TCGA	2 cut(s)	176, 596
TasI	AATT	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	469, 598
Tru1I	TTAA	6 cut(s)	150, 254, 339, 572, 614, 676
Tru9I	TTAA	6 cut(s)	150, 254, 339, 572, 614, 676
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	17, 323
TspGWI	ACGGA	1 cut(s)	93
VspI	ATTAAT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.