Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006570

Physical Location & Seq

Genomic Coordinates Forward (+)

2070576 .. 2071238

Gene Structure 663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG030800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGTAACCTCATCACCAAGCTATCTATGCTGCTTTGCAGTTTCAGTACTTCTTCTTTCCTTGCCCTCACATTCTGCAGACCCTGATCAATTACAAGACTTCTGTGTCGCAGATTTCACTCGTGCCTCCAAGTCCGACAATGTCTTCCCCTGCAAGCCCATCGCAGATGTTACTTCTGATGACTTTGTATTTGATGGTGCACGCGAGAAAGGGAACATCACAGATGTGTTCGGGCTGAACGTGACGGATGGAAATGTGCTTGCTTTTCCTGCCCTCAACACTCTCGGGGTGTCAATGAACAGAGTTAACTTTGCCCCGGGTGCCTTGAACCCACCTCACTCACACCCTCGTGCAAGTGAGATTGGGATTGTCATTGAAGGGACAATTCTTGCGGGGTTTGTGACAACTGACAATGTGTACTACTCGAAGGTTTTGACCGCCGGGCAGATGTTTGTGATTCCGAGAGGACTTGTGCACTTCCAGCTCAATGTTGGAAAAGGGAATGCCCTATCCATCACAGCTTTCAACAGTCACTTGCCTGGCGCTTCTAAACTTCCTTTGAATATGTTTTCTACTACGCCTTCAATCCCGGACAAAGTGTTAACAAAGACCTTTCAAGTAGACCAAGATGTTATCACCAGCATTAGATCCAAGTTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

220

Amino Acids

23.53

Weight (kDa)

5.89

Isoelectric Point (pI)

19.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	67 - 210	2.4e-42	Cupin
Cupin_2	PF07883	101 - 169	2.3e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18970 AT1G18980
fragaria_vesca	FvH4_5g15981 FvH4_5g15981
malus_domestica	MD14G1190200.v1.1
prunus_persica	Prupe.5G182600_v2.0.a1 Prupe.5G182800_v2.0.a1 Prupe.5G182900_v2.0.a1 Prupe.5G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180091
rosa_laevigata	RLG00000005294 RLG00000005295
rosa_multiflora	Rmu_sc0017616.1_g000004 Rmu_sc0017616.1_g000005 Rmu_ssc0000119.1_g000030
rosa_roxburghii	Rroxscaffold_3G00273140
rosa_rugosa	Rorug06G0430500.1 Rorug06G0430600
rosa_samantha	Rh7AG030800 Rh7AG030900 Rh7BG030700 Rh7BG030800 Rh7CG032500 Rh7CG032600 Rh7DG031500
rosa_wichuraiana	Rw7G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	320
AccI	GTMKAC	1 cut(s)	621
AccII	CGCG	1 cut(s)	204
AciI	CCGC	2 cut(s)	392, 438
AclWI	GGATC	1 cut(s)	642
AfaI	GTAC	2 cut(s)	48, 419
AgsI	TTSAA	6 cut(s)	328, 377, 526, 562, 585, 617
AjnI	CCWGG	1 cut(s)	538
AleI	CACNNNNGTG	2 cut(s)	224, 348
AluBI	AGCT	3 cut(s)	21, 484, 521
AluI	AGCT	3 cut(s)	21, 484, 521
Alw21I	GWGCWC	2 cut(s)	202, 477
Alw44I	GTGCAC	2 cut(s)	198, 473
AlwI	GGATC	1 cut(s)	642
AlwNI	CAGNNNCTG	1 cut(s)	83
Ama87I	CYCGRG	2 cut(s)	284, 316
ApaLI	GTGCAC	2 cut(s)	198, 473
ApeKI	GCWGC	1 cut(s)	30
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	1 cut(s)	545
AsuC2I	CCSGG	4 cut(s)	317, 318, 442, 590
AsuHPI	GGTGA	2 cut(s)	6, 628
AvaI	CYCGRG	2 cut(s)	284, 316
BaeGI	GKGCMC	2 cut(s)	202, 477
BanI	GGYRCC	1 cut(s)	320
BauI	CACGAG	2 cut(s)	120, 348
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	2 cut(s)	202, 477
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	4 cut(s)	167, 188, 242, 521
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	540
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	4 cut(s)	317, 318, 442, 590
BfmI	CTRYAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	546
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
BmcAI	AGTACT	1 cut(s)	48
Bme1390I	CCNGG	5 cut(s)	317, 318, 442, 540, 590
BmeT110I	CYCGRG	2 cut(s)	284, 316
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	5 cut(s)	317, 318, 442, 540, 590
BpiI	GAAGAC	1 cut(s)	136
BpuMI	CCSGG	4 cut(s)	317, 318, 442, 590
BsaJI	CCNNGG	2 cut(s)	315, 316
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	315, 316
BseGI	GGATG	1 cut(s)	253
BseSI	GKGCMC	2 cut(s)	202, 477
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	320
BsiHKAI	GWGCWC	2 cut(s)	202, 477
BsiHKCI	CYCGRG	2 cut(s)	284, 316
BsiSI	CCGG	3 cut(s)	317, 441, 590
BslFI	GGGAC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	394
BsmI	GAATGC	1 cut(s)	508
BsoBI	CYCGRG	2 cut(s)	284, 316
Bsp1286I	GDGCHC	2 cut(s)	202, 477
Bsp143I	GATC	2 cut(s)	85, 647
BspACI	CCGC	2 cut(s)	392, 438
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	322
BspMAI	CTGCAG	1 cut(s)	79
BspPI	GGATC	1 cut(s)	642
BspT107I	GGYRCC	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	315, 316
BssMI	GATC	2 cut(s)	85, 647
BssSI	CACGAG	2 cut(s)	120, 348
Bst2BI	CACGAG	2 cut(s)	120, 348
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	1 cut(s)	530
BstC8I	GCNNGC	3 cut(s)	155, 202, 261
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	2 cut(s)	88, 650
BstMBI	GATC	2 cut(s)	85, 647
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 269, 320, 481
BstNI	CCWGG	1 cut(s)	540
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	5 cut(s)	315, 316, 440, 538, 588
BstSFI	CTRYAG	1 cut(s)	75
BstSLI	GKGCMC	2 cut(s)	202, 477
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	253
Cac8I	GCNNGC	3 cut(s)	155, 202, 261
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	1 cut(s)	545
Cfr9I	CCCGGG	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	47, 418
CviJI	RGCY	6 cut(s)	21, 157, 235, 484, 521, 660
CviKI_1	RGCY	6 cut(s)	21, 157, 235, 484, 521, 660
CviQI	GTAC	2 cut(s)	47, 418
DpnI	GATC	2 cut(s)	87, 649
DpnII	GATC	2 cut(s)	85, 647
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
Eco88I	CYCGRG	2 cut(s)	284, 316
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	538
FaiI	YATR	2 cut(s)	28, 566
FaqI	GGGAC	1 cut(s)	394
FauI	CCCGC	1 cut(s)	385
FbaI	TGATCA	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	1 cut(s)	31
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	31
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	546
HapII	CCGG	3 cut(s)	317, 441, 590
HhaI	GCGC	1 cut(s)	545
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	2 cut(s)	307, 603
HindII	GTYRAC	2 cut(s)	307, 603
HinfI	GANTC	1 cut(s)	457
HpaI	GTTAAC	2 cut(s)	307, 603
HpaII	CCGG	3 cut(s)	317, 441, 590
HphI	GGTGA	2 cut(s)	6, 628
Hpy166II	GTNNAC	6 cut(s)	200, 307, 418, 475, 603, 622
Hpy188I	TCNGA	3 cut(s)	136, 178, 462
Hpy8I	GTNNAC	6 cut(s)	200, 307, 418, 475, 603, 622
HpyAV	CCTTC	3 cut(s)	371, 421, 591
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	6 cut(s)	38, 77, 153, 200, 353, 475
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 269, 320, 481
HpySE526I	ACGT	1 cut(s)	240
HspAI	GCGC	1 cut(s)	543
Ksp22I	TGATCA	1 cut(s)	85
KspAI	GTTAAC	2 cut(s)	307, 603
Kzo9I	GATC	2 cut(s)	85, 647
Lsp1109I	GCAGC	1 cut(s)	17
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	5 cut(s)	4, 169, 241, 400, 530
MalI	GATC	2 cut(s)	87, 649
MboI	GATC	2 cut(s)	85, 647
MboII	GAAGA	2 cut(s)	44, 136
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	2 cut(s)	202, 477
MluCI	AATT	2 cut(s)	89, 384
MmeI	TCCRAC	2 cut(s)	159, 472
MnlI	CCTC	7 cut(s)	19, 76, 136, 284, 345, 357, 458
MseI	TTAA	2 cut(s)	306, 602
MslI	CAYNNNNRTG	2 cut(s)	224, 348
MspI	CCGG	3 cut(s)	317, 441, 590
MspR9I	CCNGG	5 cut(s)	317, 318, 442, 540, 590
Mva1269I	GAATGC	1 cut(s)	508
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	4 cut(s)	27, 269, 320, 481
NciI	CCSGG	4 cut(s)	317, 318, 442, 590
NdeII	GATC	2 cut(s)	85, 647
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	3 cut(s)	241, 400, 530
OliI	CACNNNNGTG	2 cut(s)	224, 348
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	1 cut(s)	508
PfeI	GAWTC	1 cut(s)	457
PflFI	GACNNNGTC	1 cut(s)	140
PfoI	TCCNGGA	1 cut(s)	588
PkrI	GCNGC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	538
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	322
PstI	CTGCAG	1 cut(s)	79
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	647
PsyI	GACNNNGTC	1 cut(s)	140
RsaI	GTAC	2 cut(s)	48, 419
RsaNI	GTAC	2 cut(s)	47, 418
RseI	CAYNNNNRTG	2 cut(s)	224, 348
SaqAI	TTAA	2 cut(s)	306, 602
SatI	GCNGC	1 cut(s)	31
Sau3AI	GATC	2 cut(s)	85, 647
ScaI	AGTACT	1 cut(s)	48
ScrFI	CCNGG	5 cut(s)	317, 318, 442, 540, 590
SduI	GDGCHC	2 cut(s)	202, 477
SetI	ASST	8 cut(s)	11, 23, 243, 337, 432, 486, 523, 614
SfcI	CTRYAG	1 cut(s)	75
SmaI	CCCGGG	1 cut(s)	318
SmiMI	CAYNNNNRTG	2 cut(s)	224, 348
Sse9I	AATT	2 cut(s)	89, 384
SsiI	CCGC	2 cut(s)	392, 438
StyD4I	CCNGG	5 cut(s)	315, 316, 440, 538, 588
TaaI	ACNGT	1 cut(s)	530
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	425
TasI	AATT	2 cut(s)	89, 384
TatI	WGTACW	2 cut(s)	46, 417
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	2 cut(s)	306, 602
Tru9I	TTAA	2 cut(s)	306, 602
TseFI	GTSAC	3 cut(s)	241, 400, 530
TseI	GCWGC	1 cut(s)	30
Tsp45I	GTSAC	3 cut(s)	241, 400, 530
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	260
TspMI	CCCGGG	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	140
VneI	GTGCAC	2 cut(s)	198, 473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XmaI	CCCGGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	621
ZrmI	AGTACT	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.