Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006570

Physical Location & Seq

Genomic Coordinates Forward (+)

15248376 .. 15249225

Gene Structure 850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G182900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGATCACCTCATCACCAAGCTTGCTATTGTTCTGCCTCACAGTTTCATTGCTGCTGCTTCTTCTTCCCTTGCCCTCCCATTGTGCAGACCCTGATCCATTGCAAGACTTGTGTGTGGCAGACTTGAGTGCCTCCATATCTGCTAACAACTTCCCCTGCAAGCCGCTCTCGGAGGTTACTTCAGATGACTTTGTCTTCGACGGGCTGCGCAAGCAAGCTAACTTCACGGACGCCTTCGGGGTCACGGTGACAACCGGGAACGTCCTCTCGTTCCCGGGGCTCAACACTCTGGGGATAGCCATGAACAGAGTTGACATTGAGCCGGGTGGGATTAACCCGCCTCACTCGCACCCTCGTGCGAGCGAGATTGGGATTGTCATTGAAGGGAAGATTCTTGCAGGGATTGTGACGACTGAAAATGTGTACTACTCAAAAGTCTTGACTGCCGGGCAAGTGTTTGTGATTCCAAGAGGACTTGTTCACTTTCAGCTGAATGTTGGACGAAAAAAGGCCCTTACCTTCACTGCTTTCAACAGCCACTTGCCTGGCTCCACTGTTCTTCCTCTGAATCTGTTTGCTGCGGCCCCTTCGATCCCAGTCGAAGTGCTGACCAAGACCTTTCTAGTAGATGAAGATGCCATCAACAACATTAAATCCAAGTTTGTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

224

Amino Acids

23.85

Weight (kDa)

5.66

Isoelectric Point (pI)

28.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18970 AT1G18980
fragaria_vesca	FvH4_5g15981 FvH4_5g15981
malus_domestica	MD14G1190200.v1.1
prunus_persica	Prupe.5G182600_v2.0.a1 Prupe.5G182800_v2.0.a1 Prupe.5G182900_v2.0.a1 Prupe.5G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180091
rosa_laevigata	RLG00000005294 RLG00000005295
rosa_multiflora	Rmu_sc0017616.1_g000004 Rmu_sc0017616.1_g000005 Rmu_ssc0000119.1_g000030
rosa_roxburghii	Rroxscaffold_3G00273140
rosa_rugosa	Rorug06G0430500.1 Rorug06G0430600
rosa_samantha	Rh7AG030800 Rh7AG030900 Rh7BG030700 Rh7BG030800 Rh7CG032500 Rh7CG032600 Rh7DG031500
rosa_wichuraiana	Rw7G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	209
AccBSI	CCGCTC	1 cut(s)	166
AciI	CCGC	3 cut(s)	164, 338, 581
AclWI	GGATC	2 cut(s)	89, 586
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	383, 532
AjnI	CCWGG	1 cut(s)	544
AleI	CACNNNNGTG	1 cut(s)	354
AluBI	AGCT	3 cut(s)	21, 218, 490
AluI	AGCT	3 cut(s)	21, 218, 490
AlwI	GGATC	2 cut(s)	89, 586
AlwNI	CAGNNNCTG	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	2 cut(s)	510, 582
ApeKI	GCWGC	4 cut(s)	52, 55, 205, 578
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	511, 583
AsuC2I	CCSGG	5 cut(s)	256, 275, 276, 324, 448
AsuHPI	GGTGA	2 cut(s)	6, 259
AvaI	CYCGRG	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	282
BauI	CACGAG	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	187
BbvI	GCAGC	4 cut(s)	39, 42, 192, 565
BccI	CCATC	1 cut(s)	647
BciT130I	CCWGG	1 cut(s)	546
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	5 cut(s)	256, 275, 276, 324, 448
BfaI	CTAG	1 cut(s)	623
BisI	GCNGC	6 cut(s)	53, 56, 164, 206, 579, 582
BlsI	GCNGC	6 cut(s)	54, 57, 165, 207, 580, 583
Bme1390I	CCNGG	6 cut(s)	256, 275, 276, 324, 448, 546
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	511, 583
BmiI	GGNNCC	2 cut(s)	550, 585
BmrFI	CCNGG	6 cut(s)	256, 275, 276, 324, 448, 546
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	1 cut(s)	625
BmuI	ACTGGG	1 cut(s)	590
BpiI	GAAGAC	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	145
BpuMI	CCSGG	5 cut(s)	256, 275, 276, 324, 448
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	274, 275
Bse1I	ACTGG	1 cut(s)	596
Bse3DI	GCAATG	2 cut(s)	47, 98
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	2 cut(s)	274, 275
BseMI	GCAATG	2 cut(s)	47, 98
BseNI	ACTGG	1 cut(s)	596
BseXI	GCAGC	4 cut(s)	39, 42, 192, 565
BsgI	GTGCAG	1 cut(s)	105
BshFI	GGCC	2 cut(s)	512, 584
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	4 cut(s)	255, 275, 323, 447
BsnI	GGCC	2 cut(s)	512, 584
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	3 cut(s)	3, 94, 591
BspACI	CCGC	3 cut(s)	164, 338, 581
BspANI	GGCC	2 cut(s)	512, 584
BspLI	GGNNCC	2 cut(s)	550, 585
BspPI	GGATC	2 cut(s)	89, 586
BsrBI	CCGCTC	1 cut(s)	166
BsrDI	GCAATG	2 cut(s)	47, 98
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	2 cut(s)	274, 275
BssMI	GATC	3 cut(s)	3, 94, 591
BssNI	GRCGYC	1 cut(s)	231
BssSI	CACGAG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	3 cut(s)	43, 247, 556
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	5 cut(s)	23, 161, 212, 216, 361
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	3 cut(s)	6, 97, 594
BstMBI	GATC	3 cut(s)	3, 94, 591
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 346
BstNI	CCWGG	1 cut(s)	546
BstSCI	CCNGG	6 cut(s)	254, 273, 274, 322, 446, 544
BstV1I	GCAGC	4 cut(s)	39, 42, 192, 565
BstV2I	GAAGAC	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	545
BsuRI	GGCC	2 cut(s)	512, 584
BtsI	GCAGTG	1 cut(s)	522
BtsIMutI	CAGTG	2 cut(s)	522, 552
Cac8I	GCNNGC	5 cut(s)	23, 161, 212, 216, 361
CaiI	CAGNNNCTG	1 cut(s)	92
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	511, 583
Cfr9I	CCCGGG	1 cut(s)	274
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	1 cut(s)	301
CviQI	GTAC	1 cut(s)	424
DpnI	GATC	3 cut(s)	5, 96, 593
DpnII	GATC	3 cut(s)	3, 94, 591
Eco24I	GRGCYC	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	511
EcoRII	CCWGG	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	282
FaeI	CATG	1 cut(s)	304
FaiI	YATR	2 cut(s)	137, 302
FalI	AAGNNNNNCTT	1 cut(s)	650
FatI	CATG	1 cut(s)	300
FauI	CCCGC	1 cut(s)	345
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	6 cut(s)	53, 56, 164, 206, 579, 582
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	6 cut(s)	53, 56, 164, 206, 579, 582
FspBI	CTAG	1 cut(s)	623
FspI	TGCGCA	1 cut(s)	209
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	6 cut(s)	53, 56, 164, 206, 579, 582
HaeIII	GGCC	2 cut(s)	512, 584
HapII	CCGG	4 cut(s)	255, 275, 323, 447
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	210
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	19
HinfI	GANTC	3 cut(s)	391, 463, 568
HpaII	CCGG	4 cut(s)	255, 275, 323, 447
HphI	GGTGA	2 cut(s)	6, 259
Hpy166II	GTNNAC	3 cut(s)	313, 424, 481
Hpy188I	TCNGA	3 cut(s)	172, 184, 567
Hpy188III	TCNNGA	1 cut(s)	439
Hpy8I	GTNNAC	3 cut(s)	313, 424, 481
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	4 cut(s)	244, 377, 529, 597
HpyCH4III	ACNGT	3 cut(s)	43, 247, 556
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	86, 103, 159, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 346
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 94, 591
LmnI	GCTCC	1 cut(s)	554
Lsp1109I	GCAGC	4 cut(s)	39, 42, 192, 565
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	4 cut(s)	175, 241, 247, 406
MalI	GATC	3 cut(s)	5, 96, 593
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	3 cut(s)	3, 94, 591
MboII	GAAGA	6 cut(s)	53, 56, 187, 400, 551, 644
MhlI	GDGCHC	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	478
MseI	TTAA	2 cut(s)	333, 651
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	4 cut(s)	255, 275, 323, 447
MspR9I	CCNGG	6 cut(s)	256, 275, 276, 324, 448, 546
MvaI	CCWGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	2 cut(s)	211, 346
NciI	CCSGG	5 cut(s)	256, 275, 276, 324, 448
NdeII	GATC	3 cut(s)	3, 94, 591
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	2 cut(s)	550, 585
NmuCI	GTSAC	3 cut(s)	241, 247, 406
NsbI	TGCGCA	1 cut(s)	209
OliI	CACNNNNGTG	1 cut(s)	354
PfeI	GAWTC	3 cut(s)	391, 463, 568
PflFI	GACNNNGTC	1 cut(s)	191
PkrI	GCNGC	6 cut(s)	54, 57, 165, 207, 580, 583
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	550, 585
PspPI	GGNCC	2 cut(s)	511, 583
PstNI	CAGNNNCTG	1 cut(s)	92
PsyI	GACNNNGTC	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	333, 651
SatI	GCNGC	6 cut(s)	53, 56, 164, 206, 579, 582
Sau3AI	GATC	3 cut(s)	3, 94, 591
Sau96I	GGNCC	2 cut(s)	511, 583
ScrFI	CCNGG	6 cut(s)	256, 275, 276, 324, 448, 546
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	8 cut(s)	11, 23, 177, 220, 264, 492, 521, 620
SfaNI	GCATC	1 cut(s)	625
SmaI	CCCGGG	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
SsiI	CCGC	3 cut(s)	164, 338, 581
SspMI	CTAG	1 cut(s)	623
StyD4I	CCNGG	6 cut(s)	254, 273, 274, 322, 446, 544
TaaI	ACNGT	3 cut(s)	43, 247, 556
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	198, 590, 600
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	2 cut(s)	166, 584
TfiI	GAWTC	3 cut(s)	391, 463, 568
Tru1I	TTAA	2 cut(s)	333, 651
Tru9I	TTAA	2 cut(s)	333, 651
TscAI	CASTG	2 cut(s)	529, 559
TseFI	GTSAC	3 cut(s)	241, 247, 406
TseI	GCWGC	4 cut(s)	52, 55, 205, 578
Tsp45I	GTSAC	3 cut(s)	241, 247, 406
TspDTI	ATGAA	3 cut(s)	36, 317, 645
TspGWI	ACGGA	1 cut(s)	242
TspMI	CCCGGG	1 cut(s)	274
TspRI	CASTG	2 cut(s)	529, 559
Tth111I	GACNNNGTC	1 cut(s)	191
XmaI	CCCGGG	1 cut(s)	274
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.