RLG00000005294

Germin-like protein subfamily T member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006570
Physical Location & Seq
Reverse (-)
66574855 .. 66575414
560 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005294

Sequence Viewer

Length: 438 bp
ATGGTAACCTCATCACCAAGCTATCTATGCTGCTTTGCAGTTTCAGTACTTCTTCTTTCCTTGCCCTCATATTCTGCAGACCCTGATCAATTACAAGACTTCTCTGTCGCAGATTTCACTCGTGCGTCCAAGTCCGACAATGTCTTCCCCTGCAAGCCCATCGCAGAGGTTACTTCTGATGACTTTGTCTTTGATGGTGCACGGACAATTCTTGCGGGGTTTGTGACAACTGACAATGTGTACTACTCGAAGGTTTTGACCGCCGGGCAGATGTTTGTGATTCCGAGAGCACTTGTGCACTTCCAGCTCAATGTTGGAAAAGGGAATGCCCTATCCATCACAGCTTTCAACAGTCAGTTACCTGGCGCTTCTAAACTTCCTTTGAATATGTTTTCTACTACGCCTTCAATCCCGGACCAAGTGATCACAAAGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

146

Amino Acids

15.61

Weight (kDa)

5.06

Isoelectric Point (pI)

17.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 70 - 144 1e-15 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
AciI CCGC 2 cut(s) 215, 261
AfaI GTAC 2 cut(s) 48, 242
AgsI TTSAA 3 cut(s) 349, 385, 408
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 3 cut(s) 21, 307, 344
AluI AGCT 3 cut(s) 21, 307, 344
Alw21I GWGCWC 3 cut(s) 202, 292, 300
Alw44I GTGCAC 2 cut(s) 198, 296
AlwNI CAGNNNCTG 1 cut(s) 83
ApaLI GTGCAC 2 cut(s) 198, 296
ApeKI GCWGC 1 cut(s) 30
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 415
AsuC2I CCSGG 2 cut(s) 265, 413
AsuHPI GGTGA 1 cut(s) 6
AvaII GGWCC 1 cut(s) 415
BaeGI GKGCMC 2 cut(s) 202, 300
BauI CACGAG 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 136
Bbv12I GWGCWC 3 cut(s) 202, 292, 300
BbvI GCAGC 1 cut(s) 17
BccI CCATC 3 cut(s) 167, 188, 344
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 1 cut(s) 363
BclI TGATCA 2 cut(s) 85, 423
BcnI CCSGG 2 cut(s) 265, 413
BfmI CTRYAG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 369
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 3 cut(s) 265, 363, 413
Bme18I GGWCC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 415
BmrFI CCNGG 3 cut(s) 265, 363, 413
BpiI GAAGAC 1 cut(s) 136
BpuMI CCSGG 2 cut(s) 265, 413
BseBI CCWGG 1 cut(s) 363
BseSI GKGCMC 2 cut(s) 202, 300
BseXI GCAGC 1 cut(s) 17
BsiHKAI GWGCWC 3 cut(s) 202, 292, 300
BsiSI CCGG 2 cut(s) 264, 413
BsmI GAATGC 1 cut(s) 331
Bsp1286I GDGCHC 3 cut(s) 202, 292, 300
Bsp143I GATC 2 cut(s) 85, 423
BspACI CCGC 2 cut(s) 215, 261
BspMAI CTGCAG 1 cut(s) 79
BssMI GATC 2 cut(s) 85, 423
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 155
BstEII GGTNACC 1 cut(s) 4
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 2 cut(s) 88, 426
BstMBI GATC 2 cut(s) 85, 423
BstMWI GCNNNNNNNGC 2 cut(s) 27, 304
BstNI CCWGG 1 cut(s) 363
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 3 cut(s) 263, 361, 411
BstSFI CTRYAG 1 cut(s) 75
BstSLI GKGCMC 2 cut(s) 202, 300
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 136
BtgZI GCGATG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 155
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 415
CseI GACGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 47, 241
CviJI RGCY 4 cut(s) 21, 157, 307, 344
CviKI_1 RGCY 4 cut(s) 21, 157, 307, 344
CviQI GTAC 2 cut(s) 47, 241
DpnI GATC 2 cut(s) 87, 425
DpnII GATC 2 cut(s) 85, 423
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 415
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 361
FaiI YATR 3 cut(s) 28, 70, 389
FauI CCCGC 1 cut(s) 208
FbaI TGATCA 2 cut(s) 85, 423
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
GlaI GCGC 1 cut(s) 367
GluI GCNGC 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 369
HapII CCGG 2 cut(s) 264, 413
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 368
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 1 cut(s) 280
HpaII CCGG 2 cut(s) 264, 413
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 3 cut(s) 200, 241, 298
Hpy188I TCNGA 3 cut(s) 136, 178, 285
Hpy8I GTNNAC 3 cut(s) 200, 241, 298
HpyAV CCTTC 2 cut(s) 244, 414
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4V TGCA 5 cut(s) 38, 77, 153, 200, 298
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 304
HspAI GCGC 1 cut(s) 366
Ksp22I TGATCA 2 cut(s) 85, 423
Kzo9I GATC 2 cut(s) 85, 423
LpnPI CCDG 7 cut(s) 96, 163, 277, 317, 348, 375, 426
Lsp1109I GCAGC 1 cut(s) 17
MaeIII GTNAC 4 cut(s) 4, 169, 223, 357
MalI GATC 2 cut(s) 87, 425
MboI GATC 2 cut(s) 85, 423
MboII GAAGA 2 cut(s) 44, 136
MhlI GDGCHC 3 cut(s) 202, 292, 300
MluCI AATT 2 cut(s) 89, 207
MmeI TCCRAC 2 cut(s) 159, 295
MnlI CCTC 3 cut(s) 19, 76, 160
MspI CCGG 2 cut(s) 264, 413
MspR9I CCNGG 3 cut(s) 265, 363, 413
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 27, 304
NciI CCSGG 2 cut(s) 265, 413
NdeII GATC 2 cut(s) 85, 423
NmuCI GTSAC 1 cut(s) 223
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 280
PflFI GACNNNGTC 2 cut(s) 140, 185
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 361
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 361
PspPI GGNCC 1 cut(s) 415
PstI CTGCAG 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 83
PsyI GACNNNGTC 2 cut(s) 140, 185
RsaI GTAC 2 cut(s) 48, 242
RsaNI GTAC 2 cut(s) 47, 241
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 2 cut(s) 85, 423
Sau96I GGNCC 1 cut(s) 415
ScaI AGTACT 1 cut(s) 48
ScrFI CCNGG 3 cut(s) 265, 363, 413
SduI GDGCHC 3 cut(s) 202, 292, 300
SetI ASST 8 cut(s) 11, 23, 171, 255, 309, 346, 364, 437
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 415
Sse9I AATT 2 cut(s) 89, 207
SsiI CCGC 2 cut(s) 215, 261
StyD4I CCNGG 3 cut(s) 263, 361, 411
TaaI ACNGT 1 cut(s) 353
TaqI TCGA 1 cut(s) 248
TasI AATT 2 cut(s) 89, 207
TatI WGTACW 2 cut(s) 46, 240
TfiI GAWTC 1 cut(s) 280
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 223
TspGWI ACGGA 1 cut(s) 217
Tth111I GACNNNGTC 2 cut(s) 140, 185
VneI GTGCAC 2 cut(s) 198, 296
VpaK11BI GGWCC 1 cut(s) 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
ZrmI AGTACT 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.