Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006570

Physical Location & Seq

Genomic Coordinates Reverse (-)

66577213 .. 66578055

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005295

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCTACTTTGTGGAATTCTGGTTCCTTGCTGTGATAGGTTGTTTGTGTACTTTCTAGTTGCTGCCTTGAATCCAATAAATTTCACCTCAGCAGGGGAAGAAGATATAGAACCAAGGTCTGTAAGGTCTGAAGGATTAAGCTTCCACCAGCTATCCTGCCTTACACTTTTGGTACTGCTTCTTCTTCCTCTGCCCTCCCATTCCGCAGACCCTGATCCATTACAAGACTTCTGTGTCGCAGATATGAGTGCCTCCCTATCAGTTAATGGCTTTCCTTGCAAGGCCTCATCGCAGATCACCTCAGATGATTTTTTCTTTGACGGCCTGAGCAAAGAAGGGAACACAACCAATCCGTATAGGTGGAGTACAACAGCTGGGAATGTCCTTGCATTTCCCGGGCTGAACACCCTTGGGATATCGATGAACAGAGTCGACTTTGCTCCTGGTGGACTCAATCCACCACACTCACACCCTCGGGCAAGTGAGACTGGGGTGGTCATTGAAGGAAAGCTGCTTGTGGGATTTGTGACAACTAACAATGTGTATTACTCCAAGGTCTTGAGTGCTGGGCAGATGTTTGTGGTTCCGAGGGGACTTGTTCACTTTCAGCTAAACGTTGGAAAAGGGAAGGCCCTTGCCTTCACAGCTTTCAACAGCCACTTACCAGGCTCTTCTGTGCTTTCTTTTAATCTGTTTGCTTCGACGCCTTCCATCCCTGATGCAGTGTTAACCAAGGCCTTTCAAGTAGATGATGATGTTATCAACAACATTCGATCCAAGTTTGGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

264

Amino Acids

28.27

Weight (kDa)

5.61

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	108 - 252	5.4e-45	Cupin
Cupin_2	PF07883	143 - 212	1.5e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18970 AT1G18980
fragaria_vesca	FvH4_5g15981 FvH4_5g15981
malus_domestica	MD14G1190200.v1.1
prunus_persica	Prupe.5G182600_v2.0.a1 Prupe.5G182800_v2.0.a1 Prupe.5G182900_v2.0.a1 Prupe.5G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180091
rosa_laevigata	RLG00000005294 RLG00000005295
rosa_multiflora	Rmu_sc0017616.1_g000004 Rmu_sc0017616.1_g000005 Rmu_ssc0000119.1_g000030
rosa_roxburghii	Rroxscaffold_3G00273140
rosa_rugosa	Rorug06G0430500.1 Rorug06G0430600
rosa_samantha	Rh7AG030800 Rh7AG030900 Rh7BG030700 Rh7BG030800 Rh7CG032500 Rh7CG032600 Rh7DG031500
rosa_wichuraiana	Rw7G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	1 cut(s)	204
AclI	AACGTT	1 cut(s)	615
AclWI	GGATC	2 cut(s)	209, 768
AcsI	RAATTY	2 cut(s)	15, 79
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	704
AfaI	GTAC	3 cut(s)	50, 174, 367
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	4 cut(s)	70, 503, 652, 743
AjnI	CCWGG	2 cut(s)	442, 664
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	6 cut(s)	141, 151, 374, 511, 610, 647
AluI	AGCT	6 cut(s)	141, 151, 374, 511, 610, 647
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	2 cut(s)	209, 768
AlwNI	CAGNNNCTG	1 cut(s)	212
Ama87I	CYCGRG	2 cut(s)	395, 474
AoxI	GGCC	4 cut(s)	282, 322, 630, 735
ApeKI	GCWGC	2 cut(s)	62, 511
ApoI	RAATTY	2 cut(s)	15, 79
AspS9I	GGNCC	1 cut(s)	631
AsuC2I	CCSGG	2 cut(s)	396, 397
AsuHPI	GGTGA	2 cut(s)	76, 289
AvaI	CYCGRG	2 cut(s)	395, 474
BarI	GAAGNNNNNNTAC	2 cut(s)	165, 197
BbvCI	CCTCAGC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	49, 498
BccI	CCATC	1 cut(s)	719
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	2 cut(s)	444, 666
BcnI	CCSGG	2 cut(s)	396, 397
BcoDI	GTCTC	1 cut(s)	479
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	2 cut(s)	63, 512
BlsI	GCNGC	2 cut(s)	64, 513
Bme1390I	CCNGG	4 cut(s)	396, 397, 444, 666
BmeT110I	CYCGRG	2 cut(s)	395, 474
BmgT120I	GGNCC	1 cut(s)	631
BmiI	GGNNCC	2 cut(s)	24, 585
BmrFI	CCNGG	4 cut(s)	396, 397, 444, 666
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	1 cut(s)	709
BmuI	ACTGGG	1 cut(s)	498
Bpu10I	CCTNAGC	2 cut(s)	88, 326
BpuEI	CTTGAG	1 cut(s)	580
BpuMI	CCSGG	2 cut(s)	396, 397
Bsa29I	ATCGAT	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	704
BsaJI	CCNNGG	7 cut(s)	113, 395, 409, 473, 552, 587, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	493
BseBI	CCWGG	2 cut(s)	444, 666
BseCI	ATCGAT	1 cut(s)	419
BseDI	CCNNGG	7 cut(s)	113, 395, 409, 473, 552, 587, 732
BseGI	GGATG	1 cut(s)	711
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	3 cut(s)	102, 315, 317
BseNI	ACTGG	1 cut(s)	493
BseXI	GCAGC	2 cut(s)	49, 498
BseYI	CCCAGC	2 cut(s)	374, 566
BshFI	GGCC	4 cut(s)	284, 324, 632, 737
BshVI	ATCGAT	1 cut(s)	419
BsiHKCI	CYCGRG	2 cut(s)	395, 474
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	606
BsnI	GGCC	4 cut(s)	284, 324, 632, 737
BsoBI	CYCGRG	2 cut(s)	395, 474
Bsp143I	GATC	3 cut(s)	214, 294, 773
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	4 cut(s)	284, 324, 632, 737
BspCNI	CTCAG	3 cut(s)	101, 314, 318
BspDI	ATCGAT	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	24, 585
BspPI	GGATC	2 cut(s)	209, 768
BspQI	GCTCTTC	1 cut(s)	676
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	7 cut(s)	113, 395, 409, 473, 552, 587, 732
BssMI	GATC	3 cut(s)	214, 294, 773
BssNI	GRCGYC	1 cut(s)	704
BssT1I	CCWWGG	4 cut(s)	113, 409, 552, 732
Bst2UI	CCWGG	2 cut(s)	444, 666
Bst6I	CTCTTC	1 cut(s)	676
BstACI	GRCGYC	1 cut(s)	704
BstDEI	CTNAG	3 cut(s)	88, 301, 326
BstF5I	GGATG	1 cut(s)	711
BstKTI	GATC	3 cut(s)	217, 297, 776
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	3 cut(s)	214, 294, 773
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 644
BstNI	CCWGG	2 cut(s)	444, 666
BstSCI	CCNGG	4 cut(s)	394, 395, 442, 664
BstV1I	GCAGC	2 cut(s)	49, 498
Bsu15I	ATCGAT	1 cut(s)	419
BsuRI	GGCC	4 cut(s)	284, 324, 632, 737
BsuTUI	ATCGAT	1 cut(s)	419
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	711
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	1 cut(s)	729
CaiI	CAGNNNCTG	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	631
Cfr9I	CCCGGG	1 cut(s)	395
ClaI	ATCGAT	1 cut(s)	419
CseI	GACGC	1 cut(s)	712
Csp6I	GTAC	3 cut(s)	49, 173, 366
CviQI	GTAC	3 cut(s)	49, 173, 366
DdeI	CTNAG	3 cut(s)	88, 301, 326
DpnI	GATC	3 cut(s)	216, 296, 775
DpnII	GATC	3 cut(s)	214, 294, 773
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
Eam1104I	CTCTTC	1 cut(s)	676
EarI	CTCTTC	1 cut(s)	676
Eco130I	CCWWGG	4 cut(s)	113, 409, 552, 732
Eco147I	AGGCCT	2 cut(s)	284, 737
Eco32I	GATATC	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	2 cut(s)	395, 474
EcoO109I	RGGNCCY	1 cut(s)	631
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	2 cut(s)	442, 664
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	4 cut(s)	113, 409, 552, 732
ErhI	CCWWGG	4 cut(s)	113, 409, 552, 732
FaiI	YATR	3 cut(s)	107, 245, 357
FalI	AAGNNNNNCTT	1 cut(s)	770
FaqI	GGGAC	1 cut(s)	606
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	63, 512
FokI	GGATG	1 cut(s)	698
Fsp4HI	GCNGC	2 cut(s)	63, 512
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	2 cut(s)	63, 512
GsaI	CCCAGC	2 cut(s)	378, 570
HaeIII	GGCC	4 cut(s)	284, 324, 632, 737
HapII	CCGG	1 cut(s)	396
HgaI	GACGC	1 cut(s)	712
Hin1I	GRCGYC	1 cut(s)	704
HincII	GTYRAC	2 cut(s)	433, 729
HindII	GTYRAC	2 cut(s)	433, 729
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	3 cut(s)	70, 429, 450
HpaI	GTTAAC	1 cut(s)	729
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	2 cut(s)	76, 289
Hpy166II	GTNNAC	5 cut(s)	49, 433, 449, 601, 729
Hpy188I	TCNGA	3 cut(s)	130, 304, 588
Hpy188III	TCNNGA	1 cut(s)	559
Hpy8I	GTNNAC	5 cut(s)	49, 433, 449, 601, 729
Hpy99I	CGWCG	1 cut(s)	706
HpyAV	CCTTC	6 cut(s)	125, 329, 497, 622, 649, 717
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	3 cut(s)	279, 389, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 644
HpyF3I	CTNAG	3 cut(s)	88, 301, 326
HpySE526I	ACGT	1 cut(s)	615
Hsp92I	GRCGYC	1 cut(s)	704
KspAI	GTTAAC	1 cut(s)	729
Kzo9I	GATC	3 cut(s)	214, 294, 773
LguI	GCTCTTC	1 cut(s)	676
LmnI	GCTCC	1 cut(s)	445
Lsp1109I	GCAGC	2 cut(s)	49, 498
LweI	GCATC	1 cut(s)	709
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	3 cut(s)	216, 296, 775
MboI	GATC	3 cut(s)	214, 294, 773
MboII	GAAGA	5 cut(s)	110, 113, 173, 176, 663
MluCI	AATT	2 cut(s)	15, 79
MlyI	GAGTC	2 cut(s)	438, 444
MmeI	TCCRAC	1 cut(s)	598
MnlI	CCTC	8 cut(s)	97, 198, 205, 262, 295, 310, 483, 582
MseI	TTAA	4 cut(s)	137, 264, 687, 728
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	4 cut(s)	396, 397, 444, 666
MvaI	CCWGG	2 cut(s)	444, 666
MwoI	GCNNNNNNNGC	2 cut(s)	276, 644
NciI	CCSGG	2 cut(s)	396, 397
NdeII	GATC	3 cut(s)	214, 294, 773
NlaIV	GGNNCC	2 cut(s)	24, 585
NmuCI	GTSAC	1 cut(s)	526
PceI	AGGCCT	2 cut(s)	284, 737
PciSI	GCTCTTC	1 cut(s)	676
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	64, 513
PleI	GAGTC	2 cut(s)	437, 444
PpsI	GAGTC	2 cut(s)	437, 444
Psp1406I	AACGTT	1 cut(s)	615
Psp6I	CCWGG	2 cut(s)	442, 664
PspFI	CCCAGC	2 cut(s)	374, 566
PspGI	CCWGG	2 cut(s)	442, 664
PspN4I	GGNNCC	2 cut(s)	24, 585
PspPI	GGNCC	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	3 cut(s)	50, 174, 367
RsaNI	GTAC	3 cut(s)	49, 173, 366
SalI	GTCGAC	1 cut(s)	431
SapI	GCTCTTC	1 cut(s)	676
SaqAI	TTAA	4 cut(s)	137, 264, 687, 728
SatI	GCNGC	2 cut(s)	63, 512
Sau3AI	GATC	3 cut(s)	214, 294, 773
Sau96I	GGNCC	1 cut(s)	631
SchI	GAGTC	2 cut(s)	438, 444
ScrFI	CCNGG	4 cut(s)	396, 397, 444, 666
SfaNI	GCATC	1 cut(s)	709
SmaI	CCCGGG	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
Sse9I	AATT	2 cut(s)	15, 79
SseBI	AGGCCT	2 cut(s)	284, 737
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	1 cut(s)	56
StuI	AGGCCT	2 cut(s)	284, 737
StyD4I	CCNGG	4 cut(s)	394, 395, 442, 664
StyI	CCWWGG	4 cut(s)	113, 409, 552, 732
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	4 cut(s)	419, 432, 701, 772
TasI	AATT	2 cut(s)	15, 79
TatI	WGTACW	2 cut(s)	48, 365
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	4 cut(s)	137, 264, 687, 728
Tru9I	TTAA	4 cut(s)	137, 264, 687, 728
TscAI	CASTG	1 cut(s)	729
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	2 cut(s)	62, 511
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	1 cut(s)	437
TspGWI	ACGGA	1 cut(s)	342
TspMI	CCCGGG	1 cut(s)	395
TspRI	CASTG	1 cut(s)	729
XapI	RAATTY	2 cut(s)	15, 79
XmaI	CCCGGG	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.