Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006570

Physical Location & Seq

Genomic Coordinates Reverse (-)

6557181 .. 6558115

Gene Structure 935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGACTACTCTCCAAATCTCTTCTTCTCTTTTCAGATCTTTTCTTCTTGTGATCTGTGTCTTTGTAATCCCATCTCTCTCATCTGATTCTGATCCTTTACAAGACTTCTGCGTCGGCGATCTCAAAGCTTCTCCTTCCATCAATGGCTTCCCTTGCAAATCATCCGTCTCCGCTTCTGACTTCTTCTTCTCCGGCTTAGGTGGTCCTTTAAACACCTCGACCCCTAACGGCGTAGCCGTTTCCCCCGCCAATGTCCTAACTTTTCCGGGTCTAAACACTTTAGGACTCTCGATGAACAACGTTGAATTCGCTCCAGGCGGTGTAAATCCTCCTCACTCGCATCCGCGTGCAACCGAAGCAGGAGTTGTGATCGAAGGCTCGGTTTTTGTCGGGTTCTTGACTACTAACAACACTCTGTTCTCGAAGGTTTTGAATGCCGGAGAGATGTTTGTTGTCCCTAGAGGATTGGTTCATTTCCAATGGAATGTTGGTAAAGTGAAAGCGCGTTTGATAACCTCTTTCAACAGTCAGCTTCCAGGATCGGCTGTTCTGCCTAGTACTCTGTTTGGCTCAAACCCTACCATTCCAAATGCTGTTTTGACCAAAACGTTTAGGACTGATGATGTTACTGTGAACAAACTCAAGTCCAAGTTTGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

220

Amino Acids

23.18

Weight (kDa)

8.91

Isoelectric Point (pI)

29.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	65 - 211	6.3e-46	Cupin
Cupin_2	PF07883	101 - 172	3.7e-10	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18970 AT1G18980
fragaria_vesca	FvH4_5g15981 FvH4_5g15981
malus_domestica	MD14G1190200.v1.1
prunus_persica	Prupe.5G182600_v2.0.a1 Prupe.5G182800_v2.0.a1 Prupe.5G182900_v2.0.a1 Prupe.5G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180091
rosa_laevigata	RLG00000005294 RLG00000005295
rosa_multiflora	Rmu_sc0017616.1_g000004 Rmu_sc0017616.1_g000005 Rmu_ssc0000119.1_g000030
rosa_roxburghii	Rroxscaffold_3G00273140
rosa_rugosa	Rorug06G0430500.1 Rorug06G0430600
rosa_samantha	Rh7AG030800 Rh7AG030900 Rh7BG030700 Rh7BG030800 Rh7CG032500 Rh7CG032600 Rh7DG031500
rosa_wichuraiana	Rw7G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AccII	CGCG	2 cut(s)	346, 505
AciI	CCGC	4 cut(s)	171, 246, 318, 344
AclI	AACGTT	2 cut(s)	300, 608
AclWI	GGATC	2 cut(s)	86, 547
AcsI	RAATTY	1 cut(s)	305
AfaI	GTAC	1 cut(s)	559
AgsI	TTSAA	3 cut(s)	305, 433, 523
AjnI	CCWGG	2 cut(s)	313, 535
AloI	GAACNNNNNNTCC	2 cut(s)	531, 563
AluBI	AGCT	2 cut(s)	128, 532
AluI	AGCT	2 cut(s)	128, 532
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	2 cut(s)	86, 547
ApoI	RAATTY	1 cut(s)	305
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AspLEI	GCGC	1 cut(s)	505
AspS9I	GGNCC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	203
BccI	CCATC	2 cut(s)	79, 146
BceAI	ACGGC	2 cut(s)	221, 244
BciT130I	CCWGG	2 cut(s)	315, 537
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	2 cut(s)	459, 555
BglII	AGATCT	1 cut(s)	35
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	3 cut(s)	267, 315, 537
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmrFI	CCNGG	3 cut(s)	267, 315, 537
BmsI	GCATC	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	626
BpuMI	CCSGG	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	90
Bse8I	GATNNNNATC	1 cut(s)	90
BseBI	CCWGG	2 cut(s)	315, 537
BseGI	GGATG	2 cut(s)	161, 340
BseJI	GATNNNNATC	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	321
Bsh1236I	CGCG	2 cut(s)	346, 505
BsiSI	CCGG	3 cut(s)	192, 266, 438
BslFI	GGGAC	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	172
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	440
BsmI	GAATGC	1 cut(s)	439
Bsp143I	GATC	6 cut(s)	35, 51, 91, 118, 369, 539
BspACI	CCGC	4 cut(s)	171, 246, 318, 344
BspFNI	CGCG	2 cut(s)	346, 505
BspPI	GGATC	2 cut(s)	86, 547
BssMI	GATC	6 cut(s)	35, 51, 91, 118, 369, 539
Bst2UI	CCWGG	2 cut(s)	315, 537
Bst4CI	ACNGT	2 cut(s)	527, 631
Bst6I	CTCTTC	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	196
BstF5I	GGATG	2 cut(s)	161, 340
BstFNI	CGCG	2 cut(s)	346, 505
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	6 cut(s)	38, 54, 94, 121, 372, 542
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	6 cut(s)	35, 51, 91, 118, 369, 539
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 356
BstNI	CCWGG	2 cut(s)	315, 537
BstSCI	CCNGG	3 cut(s)	265, 313, 535
BstUI	CGCG	2 cut(s)	346, 505
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	161, 340
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	505
Cfr13I	GGNCC	1 cut(s)	203
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	558
CviJI	RGCY	8 cut(s)	128, 147, 195, 236, 378, 532, 545, 570
CviKI_1	RGCY	8 cut(s)	128, 147, 195, 236, 378, 532, 545, 570
CviQI	GTAC	1 cut(s)	558
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	6 cut(s)	37, 53, 93, 120, 371, 541
DpnII	GATC	6 cut(s)	35, 51, 91, 118, 369, 539
DraI	TTTAAA	1 cut(s)	210
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	203
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	313, 535
Esp3I	CGTCTC	1 cut(s)	172
FaqI	GGGAC	1 cut(s)	440
FauI	CCCGC	1 cut(s)	253
FokI	GGATG	2 cut(s)	148, 327
FspBI	CTAG	2 cut(s)	459, 555
GlaI	GCGC	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	297
HapII	CCGG	3 cut(s)	192, 266, 438
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	505
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	2 cut(s)	86, 285
HpaII	CCGG	3 cut(s)	192, 266, 438
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	4 cut(s)	35, 85, 91, 178
Hpy188III	TCNNGA	3 cut(s)	289, 397, 421
Hpy8I	GTNNAC	1 cut(s)	634
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	144, 368, 418
HpyCH4III	ACNGT	2 cut(s)	527, 631
HpyCH4IV	ACGT	2 cut(s)	300, 608
HpyCH4V	TGCA	2 cut(s)	156, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 356
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	2 cut(s)	300, 608
HspAI	GCGC	1 cut(s)	503
Kzo9I	GATC	6 cut(s)	35, 51, 91, 118, 369, 539
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	8 cut(s)	205, 279, 300, 327, 345, 451, 522, 549
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	2 cut(s)	459, 555
MaeII	ACGT	2 cut(s)	300, 608
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	6 cut(s)	37, 53, 93, 120, 371, 541
MboI	GATC	6 cut(s)	35, 51, 91, 118, 369, 539
MboII	GAAGA	5 cut(s)	12, 15, 35, 175, 178
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	279
MnlI	CCTC	5 cut(s)	226, 339, 342, 455, 526
MseI	TTAA	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	3 cut(s)	192, 266, 438
MspR9I	CCNGG	3 cut(s)	267, 315, 537
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	2 cut(s)	315, 537
MvnI	CGCG	2 cut(s)	346, 505
MwoI	GCNNNNNNNGC	2 cut(s)	153, 356
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	6 cut(s)	35, 51, 91, 118, 369, 539
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	86
PfoI	TCCNGGA	1 cut(s)	535
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
Psp1406I	AACGTT	2 cut(s)	300, 608
Psp6I	CCWGG	2 cut(s)	313, 535
PspGI	CCWGG	2 cut(s)	313, 535
PspPI	GGNCC	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	1 cut(s)	559
RsaNI	GTAC	1 cut(s)	558
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	209
Sau3AI	GATC	6 cut(s)	35, 51, 91, 118, 369, 539
Sau96I	GGNCC	1 cut(s)	203
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	3 cut(s)	267, 315, 537
SetI	ASST	8 cut(s)	130, 202, 218, 303, 429, 518, 534, 611
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	1 cut(s)	305
SsiI	CCGC	4 cut(s)	171, 246, 318, 344
SspMI	CTAG	2 cut(s)	459, 555
StyD4I	CCNGG	3 cut(s)	265, 313, 535
TaaI	ACNGT	2 cut(s)	527, 631
TaiI	ACGT	2 cut(s)	303, 611
TaqI	TCGA	4 cut(s)	218, 290, 372, 422
TasI	AATT	1 cut(s)	305
TatI	WGTACW	1 cut(s)	557
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	308, 461
TspGWI	ACGGA	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XspI	CTAG	2 cut(s)	459, 555
ZrmI	AGTACT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.