Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006570

Physical Location & Seq

Genomic Coordinates Forward (+)

15241710 .. 15242633

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G182600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGATCACCTCATCAAGCTTCCCATTTCTCTGCCTCACAATCTCTGTACTCTTTCTTCTTCCCTTGCCCTCCTCCTATTCTGCAGACCCTGATCCATTACAAGACCTGTGCGTGGCAGATTTAAGTGCCTCCACACCAGCCGATTATAACTTTCCCTGCAAACCCATCTCAGAGATCACATCAGATGACTTTTTCTTCGACGGCCTGACCAAACCAGGAAACAAAACCAAAGTTTTTGGGGTATCTGTATCAGCTGGCAATGTCCTCACATTTCCTGGGCTCAACACTCTTGGCATATCACTCAACAGAGTTGGGTTTGCGCCACGTGGCATCGTCCCACCTCACTCACACCCTCGAGCCAGTGAGGTTGGGGTCGTCATGGAAGGCAAGATCCTCACTGGTTTTGTGACGACTAAGAATGTTTTTTACTCCAAGGTTTTGACTGCTGGGGAGGTTTTTGTGATTCCCAGAGGGCTTGTTCACTTTCAGCTCAATGTTGGAGAAGGTGAAGCCCTTGAGTTTACTGCTTTCAACAGTCACTTGCCTGGTTCTGCTGCGGTTCCTTTGAATCTATTTTCTGCCACGCCTTCGATCTCTGACCATGTGTTGACCAAGACGTTTCTAGTGGGTGAAGATATTATTGATAACATTAGATCCAAGTTTAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

224

Amino Acids

23.91

Weight (kDa)

5.68

Isoelectric Point (pI)

26.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18970 AT1G18980
fragaria_vesca	FvH4_5g15981 FvH4_5g15981
malus_domestica	MD14G1190200.v1.1
prunus_persica	Prupe.5G182600_v2.0.a1 Prupe.5G182800_v2.0.a1 Prupe.5G182900_v2.0.a1 Prupe.5G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180091
rosa_laevigata	RLG00000005294 RLG00000005295
rosa_multiflora	Rmu_sc0017616.1_g000004 Rmu_sc0017616.1_g000005 Rmu_ssc0000119.1_g000030
rosa_roxburghii	Rroxscaffold_3G00273140
rosa_rugosa	Rorug06G0430500.1 Rorug06G0430600
rosa_samantha	Rh7AG030800 Rh7AG030900 Rh7BG030700 Rh7BG030800 Rh7CG032500 Rh7CG032600 Rh7DG031500
rosa_wichuraiana	Rw7G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	3 cut(s)	86, 385, 648
AcvI	CACGTG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	112, 663
AgsI	TTSAA	2 cut(s)	532, 568
AjnI	CCWGG	3 cut(s)	214, 274, 544
AluBI	AGCT	3 cut(s)	18, 254, 490
AluI	AGCT	3 cut(s)	18, 254, 490
AlwI	GGATC	3 cut(s)	86, 385, 648
AlwNI	CAGNNNCTG	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	354
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	554
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspLEI	GCGC	1 cut(s)	322
AsuHPI	GGTGA	2 cut(s)	518, 641
AvaI	CYCGRG	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	39, 71
BbrPI	CACGTG	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	3 cut(s)	216, 276, 546
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	1 cut(s)	623
BfmI	CTRYAG	1 cut(s)	81
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	3 cut(s)	216, 276, 546
BmeT110I	CYCGRG	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	3 cut(s)	216, 276, 546
BmsI	GCATC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	536
BsaAI	YACGTR	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	275, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 663
Bse1I	ACTGG	2 cut(s)	360, 403
Bse3DI	GCAATG	1 cut(s)	265
BseBI	CCWGG	3 cut(s)	216, 276, 546
BseDI	CCNNGG	2 cut(s)	275, 432
BseLI	CCNNNNNNNGG	2 cut(s)	112, 663
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	2 cut(s)	360, 403
BseRI	GAGGAG	1 cut(s)	61
BseXI	GCAGC	1 cut(s)	541
BseYI	CCCAGC	1 cut(s)	446
BshFI	GGCC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	2 cut(s)	112, 663
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	204
BsoBI	CYCGRG	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	6 cut(s)	3, 91, 174, 390, 591, 653
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	561
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	3 cut(s)	86, 385, 648
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	360, 403
BssECI	CCNNGG	2 cut(s)	275, 432
BssMI	GATC	6 cut(s)	3, 91, 174, 390, 591, 653
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	3 cut(s)	216, 276, 546
Bst4CI	ACNGT	1 cut(s)	536
BstBAI	YACGTR	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	169, 414
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	6 cut(s)	6, 94, 177, 393, 594, 656
BstMBI	GATC	6 cut(s)	3, 91, 174, 390, 591, 653
BstNI	CCWGG	3 cut(s)	216, 276, 546
BstSCI	CCNGG	3 cut(s)	214, 274, 544
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	541
BstX2I	RGATCY	2 cut(s)	390, 653
BstYI	RGATCY	2 cut(s)	390, 653
BsuRI	GGCC	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	367, 396
Cac8I	GCNNGC	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	89
CfoI	GCGC	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	2 cut(s)	379, 602
CviJI	RGCY	9 cut(s)	18, 140, 204, 254, 280, 359, 475, 490, 512
CviKI_1	RGCY	9 cut(s)	18, 140, 204, 254, 280, 359, 475, 490, 512
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	2 cut(s)	169, 414
DpnI	GATC	6 cut(s)	5, 93, 176, 392, 593, 655
DpnII	GATC	6 cut(s)	3, 91, 174, 390, 591, 653
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	282
Eco72I	CACGTG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	354
EcoRII	CCWGG	3 cut(s)	214, 274, 544
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	2 cut(s)	382, 605
FaiI	YATR	4 cut(s)	147, 296, 380, 603
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	2 cut(s)	378, 601
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	555
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	1 cut(s)	623
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	555
GsaI	CCCAGC	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	2 cut(s)	382, 605
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HindIII	AAGCTT	1 cut(s)	16
HinfI	GANTC	2 cut(s)	463, 568
HphI	GGTGA	2 cut(s)	518, 641
Hpy166II	GTNNAC	3 cut(s)	481, 522, 609
Hpy188I	TCNGA	3 cut(s)	172, 184, 598
Hpy8I	GTNNAC	3 cut(s)	481, 522, 609
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	3 cut(s)	377, 497, 597
HpyCH4III	ACNGT	1 cut(s)	536
HpyCH4IV	ACGT	2 cut(s)	325, 617
HpyCH4V	TGCA	2 cut(s)	83, 159
HpyF3I	CTNAG	2 cut(s)	169, 414
HpySE526I	ACGT	2 cut(s)	325, 617
Hsp92II	CATG	2 cut(s)	382, 605
HspAI	GCGC	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	6 cut(s)	3, 91, 174, 390, 591, 653
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	2 cut(s)	325, 617
MaeIII	GTNAC	2 cut(s)	406, 536
MalI	GATC	6 cut(s)	5, 93, 176, 392, 593, 655
MboI	GATC	6 cut(s)	3, 91, 174, 390, 591, 653
MboII	GAAGA	4 cut(s)	47, 50, 187, 644
MflI	RGATCY	2 cut(s)	390, 653
MhlI	GDGCHC	1 cut(s)	282
MmeI	TCCRAC	1 cut(s)	478
MseI	TTAA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	254
MspR9I	CCNGG	3 cut(s)	216, 276, 546
MvaI	CCWGG	3 cut(s)	216, 276, 546
NdeII	GATC	6 cut(s)	3, 91, 174, 390, 591, 653
NlaIII	CATG	2 cut(s)	382, 605
NlaIV	GGNNCC	1 cut(s)	561
NmuCI	GTSAC	2 cut(s)	406, 536
PaeR7I	CTCGAG	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	463, 568
PkrI	GCNGC	1 cut(s)	556
PmaCI	CACGTG	1 cut(s)	326
PmlI	CACGTG	1 cut(s)	326
Ppu21I	YACGTR	1 cut(s)	326
PsiI	TTATAA	1 cut(s)	147
Psp6I	CCWGG	3 cut(s)	214, 274, 544
PspCI	CACGTG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	3 cut(s)	214, 274, 544
PspN4I	GGNNCC	1 cut(s)	561
PspXI	VCTCGAGB	1 cut(s)	354
PstI	CTGCAG	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	390, 653
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	6 cut(s)	3, 91, 174, 390, 591, 653
ScrFI	CCNGG	3 cut(s)	216, 276, 546
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	1 cut(s)	81
Sfr274I	CTCGAG	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	354, 515
SmoI	CTYRAG	2 cut(s)	354, 515
SsiI	CCGC	1 cut(s)	557
SspMI	CTAG	1 cut(s)	623
StyD4I	CCNGG	3 cut(s)	214, 274, 544
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	536
TaiI	ACGT	2 cut(s)	328, 620
TaqI	TCGA	3 cut(s)	198, 355, 590
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	463, 568
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	2 cut(s)	367, 403
TseFI	GTSAC	2 cut(s)	406, 536
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	2 cut(s)	406, 536
TspRI	CASTG	2 cut(s)	367, 403
XhoI	CTCGAG	1 cut(s)	354
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.