Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006570

Physical Location & Seq

Genomic Coordinates Forward (+)

28152930 .. 28153586

Gene Structure 657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1190200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAACATTATCGGCCTCATACTCTGCCTCGTTGTTTCGATGCTCCTTCTTCCCTTACCCTCTGATTCTGCTGATCCTGATCCATTACAGGACTTTTGCGTGGCGGATTTGAGCGCGTCCGGGGCAGTTAACGGCTTTCCCTGCAAACCCGTGTCGAACACTACTGCAGATGACTTTTTCTTTGATGGACTGAGCAAACAAGGGAACACAAGCAATGTCTTTGGGGCGAAGGTAACAACTGCGAATGTCCTTGCATTTCCTGGCCTCAATACTCTTGGGATAGCAATGAACAGGGTTGACTTTGCCCCCGGCGGTCTTAATCCGCCTCACTCGCACCCTCGTGCGAGTGAGTCGGGCGTGGTCATCGAAGGGAAGCTCCTCGTAGGGTTTGTGACAACGAGAAACGTGTACTACTCCAAGGTTTTGAGTGCTGGGCAGATGTTTGTGGTTCCACGAGGACTCGTTCACTTTCAGCTCAATGTTGGAGAAGGTAAGGCTCTGGCCTTCACTGCTTTCAACAGTCACTTGCCTGGTTCTGTTGTACTGCCTTTAAATCTGTTCACTTCGACGCCTTTGCTCCCCGACCAAGTGTTAACTAAGGCCTTCCAAGTAGATGAAGATGTCATCAACGGCATTCGATCCAAGTTCGGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

219

Amino Acids

23.0

Weight (kDa)

5.72

Isoelectric Point (pI)

21.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	63 - 208	2e-46	Cupin
Cupin_2	PF07883	98 - 168	3.9e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18970 AT1G18980
fragaria_vesca	FvH4_5g15981 FvH4_5g15981
malus_domestica	MD14G1190200.v1.1
prunus_persica	Prupe.5G182600_v2.0.a1 Prupe.5G182800_v2.0.a1 Prupe.5G182900_v2.0.a1 Prupe.5G183100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180091
rosa_laevigata	RLG00000005294 RLG00000005295
rosa_multiflora	Rmu_sc0017616.1_g000004 Rmu_sc0017616.1_g000005 Rmu_ssc0000119.1_g000030
rosa_roxburghii	Rroxscaffold_3G00273140
rosa_rugosa	Rorug06G0430500.1 Rorug06G0430600
rosa_samantha	Rh7AG030800 Rh7AG030900 Rh7BG030700 Rh7BG030800 Rh7CG032500 Rh7CG032600 Rh7DG031500
rosa_wichuraiana	Rw7G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	116
AciI	CCGC	3 cut(s)	104, 312, 323
AclWI	GGATC	3 cut(s)	68, 74, 633
AcyI	GRCGYC	1 cut(s)	569
AfaI	GTAC	2 cut(s)	410, 543
AfiI	CCNNNNNNNGG	1 cut(s)	648
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	1 cut(s)	517
AjnI	CCWGG	2 cut(s)	259, 529
AleI	CACNNNNGTG	1 cut(s)	339
AluBI	AGCT	2 cut(s)	376, 475
AluI	AGCT	2 cut(s)	376, 475
AlwI	GGATC	3 cut(s)	68, 74, 633
AoxI	GGCC	4 cut(s)	13, 262, 501, 600
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspLEI	GCGC	1 cut(s)	116
AsuC2I	CCSGG	2 cut(s)	121, 309
BauI	CACGAG	2 cut(s)	339, 453
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	148, 646
BcgI	CGANNNNNNTGC	2 cut(s)	556, 590
BciT130I	CCWGG	2 cut(s)	261, 531
BcnI	CCSGG	2 cut(s)	121, 309
BfmI	CTRYAG	1 cut(s)	165
Bme1390I	CCNGG	4 cut(s)	121, 261, 309, 531
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	4 cut(s)	121, 261, 309, 531
BmsI	GCATC	1 cut(s)	30
BpuMI	CCSGG	2 cut(s)	121, 309
BsaBI	GATNNNNATC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	569
BsaJI	CCNNGG	3 cut(s)	120, 307, 417
Bsc4I	CCNNNNNNNGG	1 cut(s)	648
Bse3DI	GCAATG	2 cut(s)	220, 291
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	261, 531
BseDI	CCNNGG	3 cut(s)	120, 307, 417
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	648
BseMI	GCAATG	2 cut(s)	220, 291
BseMII	CTCAG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	368
BseYI	CCCAGC	1 cut(s)	431
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	4 cut(s)	15, 264, 503, 602
BsiSI	CCGG	2 cut(s)	120, 309
BslI	CCNNNNNNNGG	1 cut(s)	648
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	4 cut(s)	15, 264, 503, 602
Bsp143I	GATC	3 cut(s)	73, 79, 638
BspACI	CCGC	3 cut(s)	104, 312, 323
BspANI	GGCC	4 cut(s)	15, 264, 503, 602
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	1 cut(s)	450
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	3 cut(s)	68, 74, 633
BsrDI	GCAATG	2 cut(s)	220, 291
BssECI	CCNNGG	3 cut(s)	120, 307, 417
BssMI	GATC	3 cut(s)	73, 79, 638
BssNI	GRCGYC	1 cut(s)	569
BssSI	CACGAG	2 cut(s)	339, 453
BssT1I	CCWWGG	1 cut(s)	417
Bst2BI	CACGAG	2 cut(s)	339, 453
Bst2UI	CCWGG	2 cut(s)	261, 531
Bst4CI	ACNGT	1 cut(s)	521
BstACI	GRCGYC	1 cut(s)	569
BstDEI	CTNAG	2 cut(s)	191, 597
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	3 cut(s)	76, 82, 641
BstMBI	GATC	3 cut(s)	73, 79, 638
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 141, 331, 509
BstNI	CCWGG	2 cut(s)	261, 531
BstSCI	CCNGG	4 cut(s)	119, 259, 307, 529
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	116
BsuRI	GGCC	4 cut(s)	15, 264, 503, 602
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	507
CfoI	GCGC	1 cut(s)	116
CseI	GACGC	2 cut(s)	105, 577
Csp6I	GTAC	2 cut(s)	409, 542
CviJI	RGCY	8 cut(s)	15, 135, 264, 376, 475, 497, 503, 602
CviKI_1	RGCY	8 cut(s)	15, 135, 264, 376, 475, 497, 503, 602
CviQI	GTAC	2 cut(s)	409, 542
DdeI	CTNAG	2 cut(s)	191, 597
DpnI	GATC	3 cut(s)	75, 81, 640
DpnII	GATC	3 cut(s)	73, 79, 638
DraI	TTTAAA	1 cut(s)	552
EciI	GGCGGA	2 cut(s)	119, 312
Eco130I	CCWWGG	1 cut(s)	417
Eco147I	AGGCCT	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	259, 529
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaiI	YATR	1 cut(s)	20
GlaI	GCGC	1 cut(s)	115
GsaI	CCCAGC	1 cut(s)	435
HaeIII	GGCC	4 cut(s)	15, 264, 503, 602
HapII	CCGG	2 cut(s)	120, 309
HgaI	GACGC	2 cut(s)	105, 577
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	569
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	3 cut(s)	130, 298, 594
HindII	GTYRAC	3 cut(s)	130, 298, 594
HinfI	GANTC	3 cut(s)	65, 350, 459
HpaI	GTTAAC	2 cut(s)	130, 594
HpaII	CCGG	2 cut(s)	120, 309
Hpy166II	GTNNAC	6 cut(s)	130, 298, 409, 466, 561, 594
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	6 cut(s)	130, 298, 409, 466, 561, 594
Hpy99I	CGWCG	1 cut(s)	571
HpyAV	CCTTC	6 cut(s)	56, 223, 362, 482, 514, 613
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	144, 167, 254
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 141, 331, 509
HpyF3I	CTNAG	2 cut(s)	191, 597
HpySE526I	ACGT	1 cut(s)	405
Hsp92I	GRCGYC	1 cut(s)	569
HspAI	GCGC	1 cut(s)	114
KspAI	GTTAAC	2 cut(s)	130, 594
Kzo9I	GATC	3 cut(s)	73, 79, 638
LmnI	GCTCC	3 cut(s)	48, 381, 582
LweI	GCATC	1 cut(s)	30
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	3 cut(s)	232, 391, 521
MalI	GATC	3 cut(s)	75, 81, 640
MboI	GATC	3 cut(s)	73, 79, 638
MboII	GAAGA	2 cut(s)	41, 629
MlyI	GAGTC	2 cut(s)	359, 453
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	8 cut(s)	26, 38, 70, 275, 336, 348, 389, 449
MseI	TTAA	5 cut(s)	129, 318, 551, 593, 655
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	2 cut(s)	120, 309
MspR9I	CCNGG	4 cut(s)	121, 261, 309, 531
Mva1269I	GAATGC	1 cut(s)	633
MvaI	CCWGG	2 cut(s)	261, 531
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	4 cut(s)	122, 141, 331, 509
NciI	CCSGG	2 cut(s)	121, 309
NdeII	GATC	3 cut(s)	73, 79, 638
NlaIV	GGNNCC	1 cut(s)	450
NmuCI	GTSAC	2 cut(s)	391, 521
OliI	CACNNNNGTG	1 cut(s)	339
PceI	AGGCCT	1 cut(s)	602
PctI	GAATGC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	65
PleI	GAGTC	2 cut(s)	358, 453
PpsI	GAGTC	2 cut(s)	358, 453
Psp6I	CCWGG	2 cut(s)	259, 529
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	2 cut(s)	259, 529
PspN4I	GGNNCC	1 cut(s)	450
PstI	CTGCAG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	410, 543
RsaNI	GTAC	2 cut(s)	409, 542
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	5 cut(s)	129, 318, 551, 593, 655
Sau3AI	GATC	3 cut(s)	73, 79, 638
SchI	GAGTC	2 cut(s)	359, 453
ScrFI	CCNGG	4 cut(s)	121, 261, 309, 531
SetI	ASST	6 cut(s)	234, 378, 408, 423, 477, 493
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	339
SseBI	AGGCCT	1 cut(s)	602
SsiI	CCGC	3 cut(s)	104, 312, 323
StuI	AGGCCT	1 cut(s)	602
StyD4I	CCNGG	4 cut(s)	119, 259, 307, 529
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	5 cut(s)	38, 155, 366, 566, 637
TatI	WGTACW	2 cut(s)	408, 541
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	5 cut(s)	129, 318, 551, 593, 655
Tru9I	TTAA	5 cut(s)	129, 318, 551, 593, 655
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	2 cut(s)	391, 521
Tsp45I	GTSAC	2 cut(s)	391, 521
TspDTI	ATGAA	3 cut(s)	17, 302, 630
TspRI	CASTG	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.