Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005623

Physical Location & Seq

Genomic Coordinates Forward (+)

6688463 .. 6691216

Gene Structure 2754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGACGTCTGACGGAGCAACGTCGACGTCAGCTGCAGCTGCAGCAGCAGCGATGGCGACGAGGAGGAAACCGTCGTGGAGAGAGAGGGAGAACAATCGGAGAAGAGAGCGGCGGAGAAGAGCTGTTGCGGCGAAGATTTATACTGGTCTTAGAGCTCAAGGTAACTACAATCTTCCAAAACATTGTGACAACAATGAGGTTCTTAAGGCTCTTTGTTCTGAAGCTGGTTGGGTTGTTGAAGAAGACGGAACTACTTATCGCAAGGGACACAAGCCTCTACCTGGTGACATGGCTGGATCATCTTCTCGAGCAACTCCTTACTCTTCCCATAACCAAAGTCCTCTTTCTTCCACTTTTGATAGCCCCATCTTATCTTACCAAGTCAGTCCTTCCTCTTCTTCATTCCCGAGTCCTTCTCGAGTTGGTGATCCACACAATATCTCCACAATCTTCCCTTTCCTCAGGAATGGTGGTATTCCTTCATCGCTTCCTCCACTTAGAATCTCAAACAGTGCTCCTGTCACTCCACCAGTGTCATCCCCAACTTCTAGAAACCCCAAACCATTGCCTACTTGGGAATCTTTTACCAAACAATCCATGTCCATGGCTGCTAAACAGTCAATGACTTCTTTGAACTACCCGTTTTATGCGGTGTCTGCACCTGCCAGTCCTACTCATCATCGCCAGTTCCATGCTCCGGCTACTATACCTGAATGTGATGAGTCTGACTCTTCCACTGTTGATTCTGGTCATTGGATAAGCTTTCAAAAGTTTGCACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCGCCTACCTTCAATCTCGTGAAACCTGCACCACAGCAATTGTCTCCAAACACAGCAGCAATCCAAGAGATTGGTCAAAGCTCCGAGTTTAAGTTTGAGAACAGCCAAGTTAAGCCATGGGAAGGGGAGAGGATCCATGATGTGGCTATGGAGGATCTAGAGCTCACGCTTGGAAATGGTAAAGCTCATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048532 GO:0048545 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1904961 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

BES1_N

Protein Analysis

335

Amino Acids

36.49

Weight (kDa)

9.24

Isoelectric Point (pI)

78.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BES1_N	PF05687	42 - 164	1.9e-62	BES1/BZR1 plant transcription factor, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G75080 AT1G75080 AT3G50750
fragaria_vesca	FvH4_2g40170 FvH4_2g40170
malus_domestica	MD08G1035400.v1.1 MD15G1031900.v1.1
prunus_persica	Prupe.1G382900_v2.0.a1
pyrus_communis	pycom15g02760
rosa_chinensis	RchiOBHm_Chr6g0300561
rosa_laevigata	RLG00000011324 RLG00000028760
rosa_multiflora	Rmu_sc0000718.1_g000032 Rmu_sc0002792.1_g000011 Rmu_sc0021182.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167670
rosa_rugosa	Rorug06G0297200
rosa_samantha	Rh3CG341300 Rh6AG409700 Rh6BG417000 Rh6CG424700 Rh6DG410200
rosa_wichuraiana	Rw6G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
AatII	GACGTC	2 cut(s)	8, 29
Acc36I	ACCTGC	2 cut(s)	670, 847
AccB1I	GGYRCC	1 cut(s)	805
AccB7I	CCANNNNNTGG	1 cut(s)	955
AccBSI	CCGCTC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	23
AciI	CCGC	4 cut(s)	109, 112, 128, 650
AclWI	GGATC	5 cut(s)	304, 422, 940, 953, 975
AcuI	CTGAAG	1 cut(s)	240
AcyI	GRCGYC	2 cut(s)	5, 26
AfiI	CCNNNNNNNGG	4 cut(s)	281, 697, 935, 955
AflII	CTTAAG	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	239, 634, 767, 826
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	9 cut(s)	32, 38, 122, 155, 224, 762, 894, 976, 998
AluI	AGCT	9 cut(s)	32, 38, 122, 155, 224, 762, 894, 976, 998
Alw21I	GWGCWC	3 cut(s)	157, 517, 978
Alw26I	GTCTC	1 cut(s)	861
AlwI	GGATC	5 cut(s)	304, 422, 940, 953, 975
Ama87I	CYCGRG	3 cut(s)	306, 406, 417
ApeKI	GCWGC	8 cut(s)	32, 35, 38, 41, 44, 47, 608, 869
AsuHPI	GGTGA	2 cut(s)	296, 437
AvaI	CYCGRG	3 cut(s)	306, 406, 417
AxyI	CCTNAGG	1 cut(s)	461
BamHI	GGATCC	1 cut(s)	945
BanI	GGYRCC	1 cut(s)	805
BanII	GRGCYC	2 cut(s)	157, 978
BauI	CACGAG	1 cut(s)	830
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	3 cut(s)	157, 517, 978
BbvI	GCAGC	8 cut(s)	19, 25, 47, 53, 56, 59, 595, 881
BccI	CCATC	2 cut(s)	46, 374
BciT130I	CCWGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	861
BfaI	CTAG	2 cut(s)	549, 971
BfmI	CTRYAG	2 cut(s)	33, 39
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	2 cut(s)	670, 847
Bme1390I	CCNGG	1 cut(s)	282
BmeT110I	CYCGRG	3 cut(s)	306, 406, 417
BmiI	GGNNCC	2 cut(s)	807, 947
BmrFI	CCNGG	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	249
BplI	GAGNNNNNCTC	4 cut(s)	400, 432, 713, 745
BpuEI	CTTGAG	1 cut(s)	141
BsaHI	GRCGYC	2 cut(s)	5, 26
BsaJI	CCNNGG	2 cut(s)	603, 929
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	4 cut(s)	281, 697, 935, 955
Bse1I	ACTGG	4 cut(s)	148, 530, 666, 685
Bse21I	CCTNAGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	563
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	603, 929
BseGI	GGATG	1 cut(s)	536
BseLI	CCNNNNNNNGG	4 cut(s)	281, 697, 935, 955
BseMI	GCAATG	1 cut(s)	563
BseMII	CTCAG	1 cut(s)	475
BseNI	ACTGG	4 cut(s)	148, 530, 666, 685
BseRI	GAGGAG	1 cut(s)	76
BseXI	GCAGC	8 cut(s)	19, 25, 47, 53, 56, 59, 595, 881
BsgI	GTGCAG	2 cut(s)	642, 825
BshNI	GGYRCC	1 cut(s)	805
BsiHKAI	GWGCWC	3 cut(s)	157, 517, 978
BsiHKCI	CYCGRG	3 cut(s)	306, 406, 417
BsiSI	CCGG	1 cut(s)	698
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	4 cut(s)	281, 697, 935, 955
BsmAI	GTCTC	1 cut(s)	861
BsmFI	GGGAC	1 cut(s)	279
BsoBI	CYCGRG	3 cut(s)	306, 406, 417
Bsp1286I	GDGCHC	3 cut(s)	157, 517, 978
Bsp143I	GATC	4 cut(s)	296, 427, 945, 967
Bsp19I	CCATGG	2 cut(s)	603, 929
BspACI	CCGC	4 cut(s)	109, 112, 128, 650
BspCNI	CTCAG	1 cut(s)	474
BspLI	GGNNCC	2 cut(s)	807, 947
BspMAI	CTGCAG	2 cut(s)	37, 43
BspMI	ACCTGC	2 cut(s)	670, 847
BspPI	GGATC	5 cut(s)	304, 422, 940, 953, 975
BspQI	GCTCTTC	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	805
BspTI	CTTAAG	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	563
BsrI	ACTGG	4 cut(s)	148, 530, 666, 685
BssECI	CCNNGG	2 cut(s)	603, 929
BssMI	GATC	4 cut(s)	296, 427, 945, 967
BssNI	GRCGYC	2 cut(s)	5, 26
BssSI	CACGAG	1 cut(s)	830
BssT1I	CCWWGG	2 cut(s)	603, 929
Bst2BI	CACGAG	1 cut(s)	830
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	4 cut(s)	72, 512, 618, 739
Bst6I	CTCTTC	5 cut(s)	97, 112, 328, 400, 736
BstACI	GRCGYC	2 cut(s)	5, 26
BstAFI	CTTAAG	1 cut(s)	203
BstDEI	CTNAG	3 cut(s)	149, 461, 497
BstDSI	CCRYGG	2 cut(s)	603, 929
BstF5I	GGATG	1 cut(s)	536
BstKTI	GATC	4 cut(s)	299, 430, 948, 970
BstMAI	GTCTC	1 cut(s)	861
BstMBI	GATC	4 cut(s)	296, 427, 945, 967
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 41, 44, 47, 53, 128, 656, 814
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	2 cut(s)	33, 39
BstV1I	GCAGC	8 cut(s)	19, 25, 47, 53, 56, 59, 595, 881
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	2 cut(s)	945, 967
BstXI	CCANNNNNNTGG	2 cut(s)	604, 884
BstYI	RGATCY	2 cut(s)	945, 967
Bsu36I	CCTNAGG	1 cut(s)	461
BtgI	CCRYGG	2 cut(s)	603, 929
BtgZI	GCGATG	3 cut(s)	65, 468, 665
BtsCI	GGATG	1 cut(s)	536
BtsIMutI	CAGTG	3 cut(s)	517, 537, 735
BveI	ACCTGC	2 cut(s)	670, 847
CsiI	ACCWGGT	1 cut(s)	280
CspCI	CAANNNNNGTGG	2 cut(s)	834, 869
CviAII	CATG	6 cut(s)	289, 598, 604, 692, 930, 950
DdeI	CTNAG	3 cut(s)	149, 461, 497
DpnI	GATC	4 cut(s)	298, 429, 947, 969
DpnII	GATC	4 cut(s)	296, 427, 945, 967
Eam1104I	CTCTTC	5 cut(s)	97, 112, 328, 400, 736
EarI	CTCTTC	5 cut(s)	97, 112, 328, 400, 736
EciI	GGCGGA	1 cut(s)	127
Ecl136II	GAGCTC	2 cut(s)	155, 976
Eco130I	CCWWGG	2 cut(s)	603, 929
Eco24I	GRGCYC	2 cut(s)	157, 978
Eco53kI	GAGCTC	2 cut(s)	155, 976
Eco57I	CTGAAG	1 cut(s)	240
Eco81I	CCTNAGG	1 cut(s)	461
Eco88I	CYCGRG	3 cut(s)	306, 406, 417
EcoICRI	GAGCTC	2 cut(s)	155, 976
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	2 cut(s)	603, 929
EcoT38I	GRGCYC	2 cut(s)	157, 978
ErhI	CCWWGG	2 cut(s)	603, 929
FaeI	CATG	6 cut(s)	292, 601, 607, 695, 933, 953
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	6 cut(s)	288, 597, 603, 691, 929, 949
FblI	GTMKAC	1 cut(s)	23
FokI	GGATG	1 cut(s)	523
FriOI	GRGCYC	2 cut(s)	157, 978
FspBI	CTAG	2 cut(s)	549, 971
HapII	CCGG	1 cut(s)	698
Hin1I	GRCGYC	2 cut(s)	5, 26
Hin1II	CATG	6 cut(s)	292, 601, 607, 695, 933, 953
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	760
HinfI	GANTC	6 cut(s)	409, 501, 578, 722, 728, 743
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	2 cut(s)	296, 437
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	5 cut(s)	10, 99, 220, 727, 898
Hpy188III	TCNNGA	7 cut(s)	306, 406, 417, 463, 549, 832, 971
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	4 cut(s)	25, 28, 61, 76
HpyAV	CCTTC	5 cut(s)	399, 423, 489, 832, 929
HpyCH4III	ACNGT	4 cut(s)	72, 512, 618, 739
HpyCH4IV	ACGT	3 cut(s)	5, 20, 26
HpyCH4V	TGCA	5 cut(s)	35, 41, 659, 776, 842
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 41, 44, 47, 53, 128, 656, 814
HpyF3I	CTNAG	3 cut(s)	149, 461, 497
HpySE526I	ACGT	3 cut(s)	5, 20, 26
Hsp92I	GRCGYC	2 cut(s)	5, 26
Hsp92II	CATG	6 cut(s)	292, 601, 607, 695, 933, 953
Kzo9I	GATC	4 cut(s)	296, 427, 945, 967
LguI	GCTCTTC	1 cut(s)	112
LmnI	GCTCC	4 cut(s)	14, 520, 700, 899
Lsp1109I	GCAGC	8 cut(s)	19, 25, 47, 53, 56, 59, 595, 881
MabI	ACCWGGT	1 cut(s)	280
MaeI	CTAG	2 cut(s)	549, 971
MaeII	ACGT	3 cut(s)	5, 20, 26
MaeIII	GTNAC	4 cut(s)	161, 185, 284, 520
MalI	GATC	4 cut(s)	298, 429, 947, 969
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	4 cut(s)	296, 427, 945, 967
MfeI	CAATTG	1 cut(s)	851
MflI	RGATCY	2 cut(s)	945, 967
MhlI	GDGCHC	3 cut(s)	157, 517, 978
MluCI	AATT	1 cut(s)	851
MlyI	GAGTC	3 cut(s)	418, 722, 731
MseI	TTAA	3 cut(s)	204, 903, 924
MslI	CAYNNNNRTG	1 cut(s)	602
MspA1I	CMGCKG	2 cut(s)	32, 38
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	698
MspR9I	CCNGG	1 cut(s)	282
MunI	CAATTG	1 cut(s)	851
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	8 cut(s)	38, 41, 44, 47, 53, 128, 656, 814
NcoI	CCATGG	2 cut(s)	603, 929
NdeII	GATC	4 cut(s)	296, 427, 945, 967
NlaIII	CATG	6 cut(s)	292, 601, 607, 695, 933, 953
NlaIV	GGNNCC	2 cut(s)	807, 947
NmuCI	GTSAC	3 cut(s)	185, 284, 520
PaeR7I	CTCGAG	2 cut(s)	306, 417
PaqCI	CACCTGC	1 cut(s)	670
PciSI	GCTCTTC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	501, 578, 743
PflMI	CCANNNNNTGG	1 cut(s)	955
PleI	GAGTC	3 cut(s)	417, 722, 730
PpsI	GAGTC	3 cut(s)	417, 722, 730
Psp124BI	GAGCTC	2 cut(s)	157, 978
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	807, 947
PstI	CTGCAG	2 cut(s)	37, 43
PsuI	RGATCY	2 cut(s)	945, 967
PvuII	CAGCTG	2 cut(s)	32, 38
RseI	CAYNNNNRTG	1 cut(s)	602
SacI	GAGCTC	2 cut(s)	157, 978
SalI	GTCGAC	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	112
SaqAI	TTAA	3 cut(s)	204, 903, 924
Sau3AI	GATC	4 cut(s)	296, 427, 945, 967
SchI	GAGTC	3 cut(s)	418, 722, 731
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	3 cut(s)	157, 517, 978
SexAI	ACCWGGT	1 cut(s)	280
SfcI	CTRYAG	2 cut(s)	33, 39
Sfr274I	CTCGAG	2 cut(s)	306, 417
SgrDI	CGTCGACG	1 cut(s)	22
SlaI	CTCGAG	2 cut(s)	306, 417
SmiMI	CAYNNNNRTG	1 cut(s)	602
SmlI	CTYRAG	4 cut(s)	156, 203, 306, 417
SmoI	CTYRAG	4 cut(s)	156, 203, 306, 417
Sse9I	AATT	1 cut(s)	851
SsiI	CCGC	4 cut(s)	109, 112, 128, 650
SspMI	CTAG	2 cut(s)	549, 971
SstI	GAGCTC	2 cut(s)	157, 978
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	2 cut(s)	603, 929
TaaI	ACNGT	4 cut(s)	72, 512, 618, 739
TaiI	ACGT	3 cut(s)	8, 23, 29
TaqI	TCGA	3 cut(s)	23, 307, 418
TasI	AATT	1 cut(s)	851
TauI	GCSGC	2 cut(s)	112, 131
TfiI	GAWTC	3 cut(s)	501, 578, 743
Tru1I	TTAA	3 cut(s)	204, 903, 924
Tru9I	TTAA	3 cut(s)	204, 903, 924
TscAI	CASTG	3 cut(s)	517, 537, 742
TseFI	GTSAC	3 cut(s)	185, 284, 520
TseI	GCWGC	8 cut(s)	32, 35, 38, 41, 44, 47, 608, 869
Tsp45I	GTSAC	3 cut(s)	185, 284, 520
TspDTI	ATGAA	2 cut(s)	390, 471
TspGWI	ACGGA	2 cut(s)	27, 261
TspRI	CASTG	3 cut(s)	517, 537, 742
Van91I	CCANNNNNTGG	1 cut(s)	955
Vha464I	CTTAAG	1 cut(s)	203
XbaI	TCTAGA	2 cut(s)	548, 970
XcmI	CCANNNNNNNNNTGG	1 cut(s)	570
XhoI	CTCGAG	2 cut(s)	306, 417
XmiI	GTMKAC	1 cut(s)	23
XspI	CTAG	2 cut(s)	549, 971
ZraI	GACGTC	2 cut(s)	6, 27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.