RchiOBHm_Chr6g0300561

Brassinazole-resistant

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
61364852 .. 61366991
2140 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26992

Sequence Viewer

Length: 1197 bp
ATGCACCGCAACTTTTCCAAAAATGAACCTTTTTTTTTTTTTTTTTTCTTTCTAACTCTCGGAGAGATTCTTCTACACTTCAACCGAAAAAGCGAAAGCGCATTCCTCGTGAACACACGCATTTCCATCTCCGATTCCACTGAGCTTAAATCCACTGCGACGCAGAGCCTCTTCACATCGTCCCTGATAACAACAGAGAGAGAGAGAGAGAGAGGTGGAGGAAGAGTTGATTGTTGTTGTTCTTGGAGAATGACGTCAGACGGAGCCACCTCGGCGTCGACGGTTAGGAGAAAGCCGTCGTGGAGAGAAAGAGAGAATAACAGGAGGAGAGAAAGGAGGAGGAGGGCGATTGCGGCGAAGATATTCGCCGGGCTTCGAGCTCAGGGGAGCTTCAACTTGCCCAAGCACTGCGACAACAACGAGGTCCTGAAGGCTCTCTGCGTCGAGGCCGGTTGGACTGTTGAAGAAGACGGCACCACTTATCGAAAGGGATTCAAGCCACCCCCAACTGATACGCCAGGCACTTCGACCAAAGTTACACCCTATTCCTCTCTGAATCCGAGTCCACTATCTTCTTCCTTTCCAAGTCCAATTCCTTCCTACCAAGCCAGCCCCTCATCCTCTTCTTTTCCAAGCCCATCTCGTTGCTTTGATGCCACCAATTCATCAAATCTGTTTCCCAATCTGCGATCTGCTATACCTTCTTCTCTTCCTCCTCTCCGGATTTCTAATAGTGCCCCTGTGACCCCTCCACTCTCATCCCCCAACTCGAGAAAGTGCCAACCAATTCCCAATTGGGACTCCATTGCCAAACAATCCATGGCCTCTTTCAATTACCCATTTTACGCCGTGTCTGCTCCAGCTAGTCCAACTCGTCACCAACATCAACTCCATACTCCTCCCACCATTTTTGAATGTGATGAGTCTGATACTTCAACTGTTGAATCTGGCCAATGGATGAACTTCCAGAAATTTGCAACTGCCTTGTCCGCAAGGCCAACCTCTCCGACCTTCAATCTTGTGAAACCTGTCACTGCTCAGCAAAACTTGCCAGCTAATGGAATGGCAGAGATGGGGAGAGGATCAGAGTTTGAGTTTCTCGGGGAACAAGTGAAGCCATGGGTTGGGGAGAGGATTCATGAGGTGGGATTGGATGATTTAGAGCTCACACTTGGCAATGGTAAGGCCCGAAGTTAA

Protein Analysis

398

Amino Acids

44.13

Weight (kDa)

9.31

Isoelectric Point (pI)

58.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 96 - 220 6.9e-61 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 473
AccB7I CCANNNNNTGG 2 cut(s) 1058, 1124
AccI GTMKAC 1 cut(s) 278
AccIII TCCGGA 1 cut(s) 720
AciI CCGC 3 cut(s) 7, 353, 990
AclWI GGATC 1 cut(s) 1090
AcoI YGGCCR 1 cut(s) 949
AcsI RAATTY 1 cut(s) 971
AcuI CTGAAG 1 cut(s) 449
AcyI GRCGYC 2 cut(s) 254, 275
AfiI CCNNNNNNNGG 2 cut(s) 1058, 1124
AgsI TTSAA 9 cut(s) 82, 394, 464, 496, 832, 914, 936, 944, 1015
AjnI CCWGG 1 cut(s) 517
AluBI AGCT 6 cut(s) 145, 380, 390, 863, 1055, 1165
AluI AGCT 6 cut(s) 145, 380, 390, 863, 1055, 1165
Alw21I GWGCWC 2 cut(s) 382, 1167
AlwI GGATC 1 cut(s) 1090
Ama87I CYCGRG 2 cut(s) 769, 1100
Aor13HI TCCGGA 1 cut(s) 720
AoxI GGCC 5 cut(s) 447, 822, 949, 995, 1185
ApoI RAATTY 1 cut(s) 971
Asp700I GAANNNNTTC 1 cut(s) 362
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 424, 1186
AsuC2I CCSGG 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 869
AvaI CYCGRG 2 cut(s) 769, 1100
AvaII GGWCC 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 739
BalI TGGCCA 1 cut(s) 951
BanI GGYRCC 1 cut(s) 473
BanII GRGCYC 2 cut(s) 382, 1167
BauI CACGAG 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 2 cut(s) 382, 1167
BccI CCATC 3 cut(s) 134, 646, 1066
BceAI ACGGC 3 cut(s) 280, 487, 833
BciT130I CCWGG 1 cut(s) 519
BcnI CCSGG 1 cut(s) 370
BfaI CTAG 1 cut(s) 864
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 1 cut(s) 354
BlpI GCTNAGC 1 cut(s) 1038
BlsI GCNGC 1 cut(s) 355
Bme1390I CCNGG 2 cut(s) 370, 519
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 2 cut(s) 769, 1100
BmgT120I GGNCC 2 cut(s) 424, 1186
BmiI GGNNCC 2 cut(s) 265, 475
BmrFI CCNGG 2 cut(s) 370, 519
BmsI GCATC 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 843
Bpu10I CCTNAGC 1 cut(s) 381
Bpu1102I GCTNAGC 1 cut(s) 1038
BpuMI CCSGG 1 cut(s) 370
BsaHI GRCGYC 2 cut(s) 254, 275
BsaJI CCNNGG 3 cut(s) 270, 819, 1118
BsaWI WCCGGW 1 cut(s) 720
BsaXI ACNNNNNCTCC 4 cut(s) 210, 240, 873, 903
Bsc4I CCNNNNNNNGG 2 cut(s) 1058, 1124
Bse118I RCCGGY 1 cut(s) 449
Bse3DI GCAATG 2 cut(s) 804, 1183
BseAI TCCGGA 1 cut(s) 720
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 3 cut(s) 270, 819, 1118
BseGI GGATG 4 cut(s) 617, 758, 963, 1159
BseLI CCNNNNNNNGG 2 cut(s) 1058, 1124
BseMI GCAATG 2 cut(s) 804, 1183
BseMII CTCAG 3 cut(s) 132, 395, 1052
BseRI GAGGAG 5 cut(s) 340, 352, 355, 705, 888
BseSI GKGCMC 1 cut(s) 739
BshFI GGCC 5 cut(s) 449, 824, 951, 997, 1187
BshNI GGYRCC 1 cut(s) 473
BsiHKAI GWGCWC 2 cut(s) 382, 1167
BsiHKCI CYCGRG 2 cut(s) 769, 1100
BsiSI CCGG 3 cut(s) 369, 450, 721
BslFI GGGAC 2 cut(s) 166, 812
BslI CCNNNNNNNGG 2 cut(s) 1058, 1124
BsmFI GGGAC 2 cut(s) 166, 812
BsmI GAATGC 1 cut(s) 101
BsnI GGCC 5 cut(s) 449, 824, 951, 997, 1187
BsoBI CYCGRG 2 cut(s) 769, 1100
Bsp1286I GDGCHC 3 cut(s) 382, 739, 1167
Bsp13I TCCGGA 1 cut(s) 720
Bsp143I GATC 2 cut(s) 689, 1082
Bsp1720I GCTNAGC 1 cut(s) 1038
Bsp19I CCATGG 2 cut(s) 819, 1118
BspACI CCGC 3 cut(s) 7, 353, 990
BspANI GGCC 5 cut(s) 449, 824, 951, 997, 1187
BspCNI CTCAG 3 cut(s) 133, 394, 1051
BspEI TCCGGA 1 cut(s) 720
BspHI TCATGA 1 cut(s) 1138
BspLI GGNNCC 2 cut(s) 265, 475
BspPI GGATC 1 cut(s) 1090
BspT107I GGYRCC 1 cut(s) 473
BsrDI GCAATG 2 cut(s) 804, 1183
BsrFI RCCGGY 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 3 cut(s) 270, 819, 1118
BssMI GATC 2 cut(s) 689, 1082
BssNI GRCGYC 2 cut(s) 254, 275
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 2 cut(s) 819, 1118
Bst2BI CACGAG 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 3 cut(s) 283, 460, 940
Bst6I CTCTTC 4 cut(s) 176, 217, 628, 714
BstACI GRCGYC 2 cut(s) 254, 275
BstAPI GCANNNNNTGC 1 cut(s) 1048
BstC8I GCNNGC 2 cut(s) 610, 1053
BstDEI CTNAG 3 cut(s) 141, 381, 1038
BstDSI CCRYGG 2 cut(s) 819, 1118
BstF5I GGATG 4 cut(s) 617, 758, 963, 1159
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 2 cut(s) 692, 1085
BstMBI GATC 2 cut(s) 689, 1082
BstMWI GCNNNNNNNGC 5 cut(s) 272, 353, 854, 989, 1048
BstNI CCWGG 1 cut(s) 519
BstSCI CCNGG 2 cut(s) 368, 517
BstSLI GKGCMC 1 cut(s) 739
BstV2I GAAGAC 1 cut(s) 474
BsuRI GGCC 5 cut(s) 449, 824, 951, 997, 1187
BtgI CCRYGG 2 cut(s) 819, 1118
BtsCI GGATG 4 cut(s) 617, 758, 963, 1159
BtsI GCAGTG 3 cut(s) 153, 406, 1032
BtsIMutI CAGTG 4 cut(s) 138, 153, 406, 1032
Cac8I GCNNGC 2 cut(s) 610, 1053
CciI TCATGA 1 cut(s) 1138
CfoI GCGC 1 cut(s) 101
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 2 cut(s) 424, 1186
CseI GACGC 3 cut(s) 169, 264, 430
CspCI CAANNNNNGTGG 2 cut(s) 892, 927
CviAII CATG 3 cut(s) 820, 1119, 1139
DdeI CTNAG 3 cut(s) 141, 381, 1038
DpnI GATC 2 cut(s) 691, 1084
DpnII GATC 2 cut(s) 689, 1082
EaeI YGGCCR 1 cut(s) 949
Eam1104I CTCTTC 4 cut(s) 176, 217, 628, 714
EarI CTCTTC 4 cut(s) 176, 217, 628, 714
Ecl136II GAGCTC 2 cut(s) 380, 1165
Eco130I CCWWGG 2 cut(s) 819, 1118
Eco24I GRGCYC 2 cut(s) 382, 1167
Eco47I GGWCC 1 cut(s) 424
Eco53kI GAGCTC 2 cut(s) 380, 1165
Eco57I CTGAAG 1 cut(s) 449
Eco88I CYCGRG 2 cut(s) 769, 1100
EcoICRI GAGCTC 2 cut(s) 380, 1165
EcoO109I RGGNCCY 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 2 cut(s) 819, 1118
EcoT38I GRGCYC 2 cut(s) 382, 1167
ErhI CCWWGG 2 cut(s) 819, 1118
FaeI CATG 3 cut(s) 823, 1122, 1142
FaiI YATR 5 cut(s) 698, 821, 894, 1120, 1140
FaqI GGGAC 2 cut(s) 166, 812
FatI CATG 3 cut(s) 819, 1118, 1138
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 4 cut(s) 604, 745, 970, 1166
FriOI GRGCYC 2 cut(s) 382, 1167
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 1 cut(s) 864
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 843
HaeIII GGCC 5 cut(s) 449, 824, 951, 997, 1187
HapII CCGG 3 cut(s) 369, 450, 721
HgaI GACGC 3 cut(s) 169, 264, 430
HhaI GCGC 1 cut(s) 101
Hin1I GRCGYC 2 cut(s) 254, 275
Hin1II CATG 3 cut(s) 823, 1122, 1142
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HinfI GANTC 9 cut(s) 67, 134, 492, 556, 562, 800, 923, 944, 1135
HpaII CCGG 3 cut(s) 369, 450, 721
HphI GGTGA 1 cut(s) 869
Hpy166II GTNNAC 3 cut(s) 112, 279, 566
Hpy188I TCNGA 8 cut(s) 62, 133, 259, 555, 561, 928, 1008, 1087
Hpy188III TCNNGA 6 cut(s) 109, 427, 721, 771, 967, 1139
Hpy8I GTNNAC 3 cut(s) 112, 279, 566
Hpy99I CGWCG 5 cut(s) 163, 280, 283, 301, 446
HpyAV CCTTC 4 cut(s) 424, 606, 711, 1021
HpyCH4III ACNGT 3 cut(s) 283, 460, 940
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 4, 977
HpyF10VI GCNNNNNNNGC 5 cut(s) 272, 353, 854, 989, 1048
HpyF3I CTNAG 3 cut(s) 141, 381, 1038
HpySE526I ACGT 1 cut(s) 254
Hsp92I GRCGYC 2 cut(s) 254, 275
Hsp92II CATG 3 cut(s) 823, 1122, 1142
HspAI GCGC 1 cut(s) 99
Kpn2I TCCGGA 1 cut(s) 720
Kzo9I GATC 2 cut(s) 689, 1082
LmnI GCTCC 3 cut(s) 263, 387, 862
LweI GCATC 1 cut(s) 643
MaeI CTAG 1 cut(s) 864
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 4 cut(s) 535, 742, 875, 1030
MalI GATC 2 cut(s) 691, 1084
MboI GATC 2 cut(s) 689, 1082
MfeI CAATTG 1 cut(s) 793
MhlI GDGCHC 3 cut(s) 382, 739, 1167
MlsI TGGCCA 1 cut(s) 951
MluCI AATT 6 cut(s) 591, 661, 786, 793, 832, 971
MluNI TGGCCA 1 cut(s) 951
MlyI GAGTC 3 cut(s) 571, 794, 932
MmeI TCCRAC 3 cut(s) 434, 893, 1031
Mox20I TGGCCA 1 cut(s) 951
MroI TCCGGA 1 cut(s) 720
MroXI GAANNNNTTC 1 cut(s) 362
MscI TGGCCA 1 cut(s) 951
MseI TTAA 2 cut(s) 147, 1195
Msp20I TGGCCA 1 cut(s) 951
MspI CCGG 3 cut(s) 369, 450, 721
MspR9I CCNGG 2 cut(s) 370, 519
MunI CAATTG 1 cut(s) 793
Mva1269I GAATGC 1 cut(s) 101
MvaI CCWGG 1 cut(s) 519
MwoI GCNNNNNNNGC 5 cut(s) 272, 353, 854, 989, 1048
NciI CCSGG 1 cut(s) 370
NcoI CCATGG 2 cut(s) 819, 1118
NdeII GATC 2 cut(s) 689, 1082
NlaIII CATG 3 cut(s) 823, 1122, 1142
NlaIV GGNNCC 2 cut(s) 265, 475
NmeAIII GCCGAG 1 cut(s) 251
NmuCI GTSAC 3 cut(s) 742, 875, 1030
PaeR7I CTCGAG 1 cut(s) 769
PagI TCATGA 1 cut(s) 1138
PctI GAATGC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 6 cut(s) 67, 134, 492, 556, 944, 1135
PflMI CCANNNNNTGG 2 cut(s) 1058, 1124
PkrI GCNGC 1 cut(s) 355
PleI GAGTC 3 cut(s) 570, 794, 931
PpsI GAGTC 3 cut(s) 570, 794, 931
PpuMI RGGWCCY 1 cut(s) 424
Psp124BI GAGCTC 2 cut(s) 382, 1167
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 2 cut(s) 265, 475
PspPI GGNCC 2 cut(s) 424, 1186
PspPPI RGGWCCY 1 cut(s) 424
SacI GAGCTC 2 cut(s) 382, 1167
SalI GTCGAC 1 cut(s) 277
SaqAI TTAA 2 cut(s) 147, 1195
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 2 cut(s) 689, 1082
Sau96I GGNCC 2 cut(s) 424, 1186
SchI GAGTC 3 cut(s) 571, 794, 932
ScrFI CCNGG 2 cut(s) 370, 519
SduI GDGCHC 3 cut(s) 382, 739, 1167
SfaNI GCATC 1 cut(s) 643
Sfr274I CTCGAG 1 cut(s) 769
SgrDI CGTCGACG 1 cut(s) 277
SinI GGWCC 1 cut(s) 424
SlaI CTCGAG 1 cut(s) 769
SmlI CTYRAG 1 cut(s) 769
SmoI CTYRAG 1 cut(s) 769
Sse9I AATT 6 cut(s) 591, 661, 786, 793, 832, 971
SsiI CCGC 3 cut(s) 7, 353, 990
SspMI CTAG 1 cut(s) 864
SstI GAGCTC 2 cut(s) 382, 1167
StyD4I CCNGG 2 cut(s) 368, 517
StyI CCWWGG 2 cut(s) 819, 1118
TaaI ACNGT 3 cut(s) 283, 460, 940
TaiI ACGT 1 cut(s) 257
TaqI TCGA 6 cut(s) 278, 376, 444, 484, 527, 770
TasI AATT 6 cut(s) 591, 661, 786, 793, 832, 971
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 6 cut(s) 67, 134, 492, 556, 944, 1135
Tru1I TTAA 2 cut(s) 147, 1195
Tru9I TTAA 2 cut(s) 147, 1195
TscAI CASTG 4 cut(s) 145, 160, 413, 1039
TseFI GTSAC 3 cut(s) 742, 875, 1030
Tsp45I GTSAC 3 cut(s) 742, 875, 1030
TspDTI ATGAA 4 cut(s) 39, 654, 974, 1127
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 4 cut(s) 145, 160, 413, 1039
Van91I CCANNNNNTGG 2 cut(s) 1058, 1124
VpaK11BI GGWCC 1 cut(s) 424
XapI RAATTY 1 cut(s) 971
XcmI CCANNNNNNNNNTGG 2 cut(s) 792, 817
XhoI CTCGAG 1 cut(s) 769
XmiI GTMKAC 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 1 cut(s) 864
ZraI GACGTC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.