Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002792.1

Orthogroup ID

OG0005623

Physical Location & Seq

Genomic Coordinates Reverse (-)

32880 .. 33454

Gene Structure 575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002792.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgtactttcagaaatttgcaacagccttgttcggaaggccgacctccccgaccttcaatcttatgaatcccgtcactactcaacaaaacttgccggctaatggaatggcggagatggggagaggatcagagtttgaatttctcgggggacaagtgaagccttgggttggggagaggattcacgaggtgggattggatgatttagagctcacacttggcaatgagttaggggtggtgggtgctgtagcgctagtggttcggcagcagaggcttggactcaaaactggttggaacaagtggatgggcttgaggaggaagaagatgagaagatgggttaatcggcggagtgaggacatggctgggattagtgaggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048532 GO:0048545 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1904961 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

BES1_N

Protein Analysis

125

Amino Acids

14.13

Weight (kDa)

9.86

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G75080 AT1G75080 AT3G50750
fragaria_vesca	FvH4_2g40170 FvH4_2g40170
malus_domestica	MD08G1035400.v1.1 MD15G1031900.v1.1
prunus_persica	Prupe.1G382900_v2.0.a1
pyrus_communis	pycom15g02760
rosa_chinensis	RchiOBHm_Chr6g0300561
rosa_laevigata	RLG00000011324 RLG00000028760
rosa_multiflora	Rmu_sc0000718.1_g000032 Rmu_sc0002792.1_g000011 Rmu_sc0021182.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167670
rosa_rugosa	Rorug06G0297200
rosa_samantha	Rh3CG341300 Rh6AG409700 Rh6BG417000 Rh6CG424700 Rh6DG410200
rosa_wichuraiana	Rw6G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	110, 343
AclWI	GGATC	1 cut(s)	133
AcsI	RAATTY	2 cut(s)	14, 137
AdeI	CACNNNGTG	1 cut(s)	187
AfaI	GTAC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	101, 167
AgsI	TTSAA	2 cut(s)	58, 137
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	143
Aor51HI	AGCGCT	1 cut(s)	249
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	2 cut(s)	14, 137
AspLEI	GCGC	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	3 cut(s)	109, 295, 324
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	251
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
BmeT110I	CYCGRG	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 167
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	2 cut(s)	202, 306
BseLI	CCNNNNNNNGG	2 cut(s)	101, 167
BseMI	GCAATG	1 cut(s)	226
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	274
BseYI	CCCAGC	1 cut(s)	359
BshFI	GGCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	101, 167
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	40
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	125
BspACI	CCGC	2 cut(s)	110, 343
BspANI	GGCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	1 cut(s)	125
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	202, 306
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	202, 306
Cac8I	GCNNGC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	8 cut(s)	26, 40, 98, 160, 208, 271, 306, 359
CviKI_1	RGCY	8 cut(s)	26, 40, 98, 160, 208, 271, 306, 359
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	1 cut(s)	127
DpnII	GATC	1 cut(s)	125
DraIII	CACNNNGTG	1 cut(s)	187
EciI	GGCGGA	2 cut(s)	125, 358
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	210
Eco47III	AGCGCT	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	1 cut(s)	358
FaiI	YATR	2 cut(s)	65, 356
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	2 cut(s)	209, 313
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	263
GsaI	CCCAGC	1 cut(s)	363
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	358
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	3 cut(s)	67, 178, 276
HpaII	CCGG	1 cut(s)	95
Hpy188I	TCNGA	3 cut(s)	12, 35, 130
Hpy188III	TCNNGA	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	30, 64
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
Hsp92II	CATG	1 cut(s)	358
HspAI	GCGC	1 cut(s)	248
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	125
LpnPI	CCDG	3 cut(s)	108, 270, 345
Lsp1109I	GCAGC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	127
MboI	GATC	1 cut(s)	125
MboII	GAAGA	3 cut(s)	328, 331, 339
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	2 cut(s)	14, 137
MlyI	GAGTC	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	9 cut(s)	55, 116, 168, 178, 261, 303, 306, 343, 364
MroNI	GCCGGC	1 cut(s)	94
MseI	TTAA	1 cut(s)	336
MspI	CCGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	268
NaeI	GCCGGC	1 cut(s)	96
NdeII	GATC	1 cut(s)	125
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	73
PdiI	GCCGGC	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	67, 178
PkrI	GCNGC	1 cut(s)	264
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	359
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	4 cut(s)	47, 56, 189, 210
SfcI	CTRYAG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	2 cut(s)	14, 137
SsiI	CCGC	2 cut(s)	110, 343
SspMI	CTAG	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	161
TasI	AATT	2 cut(s)	14, 137
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	67, 178
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	80
XapI	RAATTY	2 cut(s)	14, 137
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.