RLG00000028760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005623
Physical Location & Seq
Reverse (-)
27558518 .. 27559566
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028760

Sequence Viewer

Length: 360 bp
ATGGATGGCGAAGCAGATGAGAAGATTGAAGGCGAGGTGTGGATGGGTTTGAGGAGGAAGCAGATGAGAGGATGGGTTTGCCGGAAAAGGACTGCTTCTTCCTCCTCCTCCTCGTCTTCTGTGTCTGGTAGTGGTGGTGGGGAGGAGGAGAGAGCTGGTGGGGTTAAAGAGAAGCACACAGCTGCGCCGCCTCCTCCATCAAACCCATCCAGAATTGGGCATGGGTTTCAGCATCACAATGATCTGGGCACCCAGGCCACCCAAACCACCAACAATTCCTGCAACTTCAGCCAAGAAGACCTATCTAATGACTCCAGCAAGCATGTAGCACCGCCTCTCAACCTTGACGACAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.78

Weight (kDa)

5.92

Isoelectric Point (pI)

63.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 248
AciI CCGC 2 cut(s) 188, 332
AcuI CTGAAG 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 216
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 2 cut(s) 155, 182
AluI AGCT 2 cut(s) 155, 182
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 248
BbsI GAAGAC 2 cut(s) 108, 303
BbvI GCAGC 1 cut(s) 169
BccI CCATC 4 cut(s) 37, 66, 205, 214
BciT130I CCWGG 1 cut(s) 254
BisI GCNGC 2 cut(s) 183, 188
BlsI GCNGC 2 cut(s) 184, 189
Bme1390I CCNGG 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 241
BpiI GAAGAC 2 cut(s) 108, 303
BpmI CTGGAG 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 4 cut(s) 10, 48, 77, 206
BseLI CCNNNNNNNGG 1 cut(s) 216
BseRI GAGGAG 7 cut(s) 67, 94, 97, 100, 158, 161, 183
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 216
BsnI GGCC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 2 cut(s) 188, 332
BspANI GGCC 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 320
BstF5I GGATG 4 cut(s) 10, 48, 77, 206
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 288
BstNI CCWGG 1 cut(s) 254
BstNSI RCATGY 2 cut(s) 326, 358
BstSCI CCNGG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 2 cut(s) 108, 303
BsuRI GGCC 1 cut(s) 257
BtsCI GGATG 4 cut(s) 10, 48, 77, 206
Cac8I GCNNGC 1 cut(s) 320
CfoI GCGC 1 cut(s) 187
CviAII CATG 3 cut(s) 221, 323, 355
CviJI RGCY 4 cut(s) 155, 182, 257, 291
CviKI_1 RGCY 4 cut(s) 155, 182, 257, 291
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 252
FaeI CATG 3 cut(s) 224, 326, 358
FaiI YATR 3 cut(s) 222, 324, 356
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FatI CATG 3 cut(s) 220, 322, 354
Fnu4HI GCNGC 2 cut(s) 183, 188
FokI GGATG 4 cut(s) 17, 55, 84, 193
Fsp4HI GCNGC 2 cut(s) 183, 188
GlaI GCGC 1 cut(s) 186
GluI GCNGC 2 cut(s) 183, 188
GsuI CTGGAG 1 cut(s) 298
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 82
HhaI GCGC 1 cut(s) 187
Hin1II CATG 3 cut(s) 224, 326, 358
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 1 cut(s) 311
HpaII CCGG 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 288
Hsp92II CATG 3 cut(s) 224, 326, 358
HspAI GCGC 1 cut(s) 185
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 9 cut(s) 95, 111, 141, 223, 230, 239, 266, 292, 328
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 241
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 4 cut(s) 34, 90, 108, 308
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 2 cut(s) 213, 274
MlyI GAGTC 1 cut(s) 305
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 288
NdeII GATC 1 cut(s) 241
NlaIII CATG 3 cut(s) 224, 326, 358
NlaIV GGNNCC 1 cut(s) 250
NspI RCATGY 2 cut(s) 326, 358
PciI ACATGT 1 cut(s) 354
PkrI GCNGC 2 cut(s) 184, 189
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PscI ACATGT 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 2 cut(s) 183, 188
Sau3AI GATC 1 cut(s) 241
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 1 cut(s) 251
SetI ASST 5 cut(s) 39, 157, 184, 303, 345
SfaNI GCATC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 2 cut(s) 213, 274
SsiI CCGC 2 cut(s) 188, 332
StyD4I CCNGG 1 cut(s) 252
TasI AATT 2 cut(s) 213, 274
TauI GCSGC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseI GCWGC 1 cut(s) 182
XceI RCATGY 2 cut(s) 326, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.