Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005623

Physical Location & Seq

Genomic Coordinates Reverse (-)

8735195 .. 8736884

Gene Structure 1690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCCTCTTTCAATTACCCATTTTACGCCGTGTCTGCTCCAGCTAGTCCAACTCGTCACCAACATCAACTCCATACTCCTCCCACCATTTTTGAATGTGATGAGTCTGATACTTCAACTGTTGAATCTGGCCAATGGATGAACTTCCAGAAATTTGCAACCGCCTTGTCCGCAAGGCCAACCTCTCCGACCTTCAATCTTGTGAAACCTGTCACTGCTCAGCAAAACTTGCCAGCTAATGTAATGGCAGAGATGGGGAGAGGATCAGAGTTTGAGTTTCTCGGGGAACAAGTGAAGCCATGGGTTGGGGAGAGGATTCATGAGGTGGGATTGGATGATTTAGAGCTCACACTTGGCAATGGTAAGGCCCGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048532 GO:0048545 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1904961 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

BES1_N

Protein Analysis

125

Amino Acids

13.83

Weight (kDa)

5.25

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G75080 AT1G75080 AT3G50750
fragaria_vesca	FvH4_2g40170 FvH4_2g40170
malus_domestica	MD08G1035400.v1.1 MD15G1031900.v1.1
prunus_persica	Prupe.1G382900_v2.0.a1
pyrus_communis	pycom15g02760
rosa_chinensis	RchiOBHm_Chr6g0300561
rosa_laevigata	RLG00000011324 RLG00000028760
rosa_multiflora	Rmu_sc0000718.1_g000032 Rmu_sc0002792.1_g000011 Rmu_sc0021182.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167670
rosa_rugosa	Rorug06G0297200
rosa_samantha	Rh3CG341300 Rh6AG409700 Rh6BG417000 Rh6CG424700 Rh6DG410200
rosa_wichuraiana	Rw6G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	305
AciI	CCGC	2 cut(s)	162, 171
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	5 cut(s)	13, 95, 117, 125, 196
AluBI	AGCT	3 cut(s)	44, 236, 346
AluI	AGCT	3 cut(s)	44, 236, 346
Alw21I	GWGCWC	1 cut(s)	348
AlwI	GGATC	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	4 cut(s)	3, 130, 176, 366
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	45
BlpI	GCTNAGC	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	24
Bpu1102I	GCTNAGC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	2 cut(s)	144, 340
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	5, 132, 178, 368
BsiHKAI	GWGCWC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	305
BsnI	GGCC	4 cut(s)	5, 132, 178, 368
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	263
Bsp1720I	GCTNAGC	1 cut(s)	219
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	2 cut(s)	162, 171
BspANI	GGCC	4 cut(s)	5, 132, 178, 368
BspCNI	CTCAG	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	319
BspPI	GGATC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	299
BstF5I	GGATG	2 cut(s)	144, 340
BstKTI	GATC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	263
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 170, 229
BsuRI	GGCC	4 cut(s)	5, 132, 178, 368
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	2 cut(s)	144, 340
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	234
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	367
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	2 cut(s)	300, 320
CviJI	RGCY	8 cut(s)	5, 44, 132, 178, 236, 298, 346, 368
CviKI_1	RGCY	8 cut(s)	5, 44, 132, 178, 236, 298, 346, 368
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	265
DpnII	GATC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	346
Eco88I	CYCGRG	1 cut(s)	281
EcoICRI	GAGCTC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	2 cut(s)	303, 323
FaiI	YATR	3 cut(s)	75, 301, 321
FatI	CATG	2 cut(s)	299, 319
FokI	GGATG	2 cut(s)	151, 347
FriOI	GRGCYC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	24
HaeIII	GGCC	4 cut(s)	5, 132, 178, 368
Hin1II	CATG	2 cut(s)	303, 323
HinfI	GANTC	3 cut(s)	104, 125, 316
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	3 cut(s)	109, 189, 268
Hpy188III	TCNNGA	2 cut(s)	148, 320
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 170, 229
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	303, 323
Kzo9I	GATC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	5 cut(s)	54, 114, 161, 222, 246
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	56, 211
MalI	GATC	1 cut(s)	265
MboI	GATC	1 cut(s)	263
MhlI	GDGCHC	1 cut(s)	348
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	2 cut(s)	13, 152
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	2 cut(s)	74, 212
MnlI	CCTC	6 cut(s)	16, 90, 193, 254, 306, 316
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	35, 170, 229
NcoI	CCATGG	1 cut(s)	299
NdeII	GATC	1 cut(s)	263
NlaIII	CATG	2 cut(s)	303, 323
NmuCI	GTSAC	2 cut(s)	56, 211
PagI	TCATGA	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	125, 316
PflMI	CCANNNNNTGG	1 cut(s)	305
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	367
SacI	GAGCTC	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	263
Sau96I	GGNCC	1 cut(s)	367
SchI	GAGTC	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	7 cut(s)	46, 185, 194, 211, 238, 327, 348
Sse9I	AATT	2 cut(s)	13, 152
SsiI	CCGC	2 cut(s)	162, 171
SspMI	CTAG	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	1 cut(s)	121
TasI	AATT	2 cut(s)	13, 152
TfiI	GAWTC	2 cut(s)	125, 316
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	2 cut(s)	56, 211
Tsp45I	GTSAC	2 cut(s)	56, 211
TspDTI	ATGAA	2 cut(s)	155, 308
TspRI	CASTG	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	152
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.