Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005623

Physical Location & Seq

Genomic Coordinates Reverse (-)

28678658 .. 28680875

Gene Structure 2218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40170.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGACGTCAGACGGAGCCACCTCGGCGTCGACGGTGAGGAGAAAGCCGTCGTGGAGAGAAAGAGAGAACAACAGGAGGAGAGAGAGGAGAAGGAGGGCGATTGCGGCCAAGATATTCGCCGGGCTTCGAGCTCAGGGGAGCTTCAACTTGCCCAAGCACTGCGATAACAACGAGGTCTTGAAGGCTCTCTGCGCCGAGGCTGGTTGGACTGTCGAAGAAGACGGCACCACTTACCGAAAGGGATTCAGGCCACCCCCAGTTGATACACCAGGCACTTCAACCAAAATTACACCCTATTCTTCTCTAAATCAGAGTCCCTTGTCTTCTTCCTTCCCAAGCCCAATTCCTTCCTACCAAGCCAGTCCCTCATCCTCGTCTTTTCCAAGCCCTTCTCGTTGTTTTGATGCCAACAATTCATCAAATCTCTTTCCCCATCTGCGATCTGCTATACCATCTCTTCCTCCTCTCCGGATTTCTAACAGTGCTCCTGTGACCCCTCCACTCTCATCTCCCAACTCAAGAAAGAGCCAACCAATTCCCAATTGGGACTCCATTGCCAAACAATCCATGGCCTCTTTCAATTACCCTTTTTACGCCGTGTCTGCTCCAGCTAGTCCAACTCGTCACCAACAGCAACTCCATACTCCTCCCACCATTTTTGAATGTGATGAGTCTGATACCTCGACTGTTGAATCTGGCCAATGGATGAACTTCCAGAAATTTGCAACCGCCTTGTCTGCAAGGCCAACCTCCCCTACCTTCAATCTTGTGAAACCTGCCACTGCTCAGCAAAACTTGCCAGCCAATGGAATGGTGGAGATGGGGAGAGGACCAGAGTTTGAGTTTCTCGGGGGACAAGTGAAGCCGTGGGTCGGGGAGAGGATTCATGAAGTGGGATTGGATGATTTAGAGCTCACACTTGGCAATGGTAAGCCTCGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048532 GO:0048545 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1904961 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

BES1_N

Protein Analysis

315

Amino Acids

34.4

Weight (kDa)

9.59

Isoelectric Point (pI)

67.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BES1_N	PF05687	87 - 209	1.4e-60	BES1/BZR1 plant transcription factor, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G75080 AT1G75080 AT3G50750
fragaria_vesca	FvH4_2g40170 FvH4_2g40170
malus_domestica	MD08G1035400.v1.1 MD15G1031900.v1.1
prunus_persica	Prupe.1G382900_v2.0.a1
pyrus_communis	pycom15g02760
rosa_chinensis	RchiOBHm_Chr6g0300561
rosa_laevigata	RLG00000011324 RLG00000028760
rosa_multiflora	Rmu_sc0000718.1_g000032 Rmu_sc0002792.1_g000011 Rmu_sc0021182.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167670
rosa_rugosa	Rorug06G0297200
rosa_samantha	Rh3CG341300 Rh6AG409700 Rh6BG417000 Rh6CG424700 Rh6DG410200
rosa_wichuraiana	Rw6G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	784
AccB1I	GGYRCC	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	806
AccI	GTMKAC	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	468
AciI	CCGC	2 cut(s)	104, 729
AcoI	YGGCCR	2 cut(s)	105, 697
AcsI	RAATTY	1 cut(s)	719
AcyI	GRCGYC	2 cut(s)	5, 26
AfiI	CCNNNNNNNGG	2 cut(s)	806, 872
AgsI	TTSAA	7 cut(s)	145, 181, 279, 580, 662, 692, 763
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	4 cut(s)	131, 141, 611, 913
AluI	AGCT	4 cut(s)	131, 141, 611, 913
Alw21I	GWGCWC	3 cut(s)	133, 487, 915
Ama87I	CYCGRG	1 cut(s)	848
Aor13HI	TCCGGA	1 cut(s)	468
AoxI	GGCC	5 cut(s)	105, 248, 570, 697, 743
ApoI	RAATTY	1 cut(s)	719
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	830
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	46, 617
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	1 cut(s)	830
BalI	TGGCCA	1 cut(s)	699
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	133, 915
BbsI	GAAGAC	2 cut(s)	225, 315
Bbv12I	GWGCWC	3 cut(s)	133, 487, 915
BccI	CCATC	3 cut(s)	441, 460, 814
BceAI	ACGGC	4 cut(s)	31, 238, 581, 850
BciT130I	CCWGG	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	121
BfaI	CTAG	1 cut(s)	612
BfuAI	ACCTGC	1 cut(s)	784
BglI	GCCNNNNNGGC	1 cut(s)	23
BisI	GCNGC	1 cut(s)	105
BlpI	GCTNAGC	1 cut(s)	786
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	2 cut(s)	121, 270
Bme18I	GGWCC	1 cut(s)	830
BmeT110I	CYCGRG	1 cut(s)	848
BmgT120I	GGNCC	1 cut(s)	830
BmiI	GGNNCC	2 cut(s)	16, 226
BmrFI	CCNGG	2 cut(s)	121, 270
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	251
BpiI	GAAGAC	2 cut(s)	225, 315
BpmI	CTGGAG	1 cut(s)	591
Bpu10I	CCTNAGC	1 cut(s)	132
Bpu1102I	GCTNAGC	1 cut(s)	786
BpuEI	CTTGAG	1 cut(s)	502
BpuMI	CCSGG	1 cut(s)	121
BsaHI	GRCGYC	2 cut(s)	5, 26
BsaJI	CCNNGG	4 cut(s)	21, 195, 567, 866
BsaWI	WCCGGW	1 cut(s)	468
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	806, 872
Bse1I	ACTGG	2 cut(s)	257, 360
Bse3DI	GCAATG	2 cut(s)	552, 931
BseAI	TCCGGA	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	4 cut(s)	21, 195, 567, 866
BseGI	GGATG	3 cut(s)	368, 711, 907
BseLI	CCNNNNNNNGG	2 cut(s)	806, 872
BseMI	GCAATG	2 cut(s)	552, 931
BseMII	CTCAG	2 cut(s)	146, 800
BseNI	ACTGG	2 cut(s)	257, 360
BseRI	GAGGAG	5 cut(s)	52, 91, 100, 453, 636
BshFI	GGCC	5 cut(s)	107, 250, 572, 699, 745
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	3 cut(s)	133, 487, 915
BsiHKCI	CYCGRG	1 cut(s)	848
BsiSI	CCGG	2 cut(s)	120, 469
BslFI	GGGAC	4 cut(s)	300, 348, 560, 867
BslI	CCNNNNNNNGG	2 cut(s)	806, 872
BsmFI	GGGAC	4 cut(s)	300, 348, 560, 867
BsnI	GGCC	5 cut(s)	107, 250, 572, 699, 745
BsoBI	CYCGRG	1 cut(s)	848
Bsp1286I	GDGCHC	3 cut(s)	133, 487, 915
Bsp13I	TCCGGA	1 cut(s)	468
Bsp143I	GATC	1 cut(s)	440
Bsp1720I	GCTNAGC	1 cut(s)	786
Bsp19I	CCATGG	1 cut(s)	567
BspACI	CCGC	2 cut(s)	104, 729
BspANI	GGCC	5 cut(s)	107, 250, 572, 699, 745
BspCNI	CTCAG	2 cut(s)	145, 799
BspEI	TCCGGA	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	886
BspLI	GGNNCC	2 cut(s)	16, 226
BspMI	ACCTGC	1 cut(s)	784
BspT107I	GGYRCC	1 cut(s)	224
BsrDI	GCAATG	2 cut(s)	552, 931
BsrI	ACTGG	2 cut(s)	257, 360
BssECI	CCNNGG	4 cut(s)	21, 195, 567, 866
BssMI	GATC	1 cut(s)	440
BssNI	GRCGYC	2 cut(s)	5, 26
BssT1I	CCWWGG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	4 cut(s)	34, 211, 482, 688
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	2 cut(s)	5, 26
BstAPI	GCANNNNNTGC	1 cut(s)	796
BstC8I	GCNNGC	1 cut(s)	801
BstDEI	CTNAG	2 cut(s)	132, 786
BstDSI	CCRYGG	2 cut(s)	567, 866
BstF5I	GGATG	3 cut(s)	368, 711, 907
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	1 cut(s)	443
BstMBI	GATC	1 cut(s)	440
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 104, 191, 602, 737, 796
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	2 cut(s)	119, 268
BstV2I	GAAGAC	2 cut(s)	225, 315
BstXI	CCANNNNNNTGG	1 cut(s)	811
BsuRI	GGCC	5 cut(s)	107, 250, 572, 699, 745
BtgI	CCRYGG	2 cut(s)	567, 866
BtsCI	GGATG	3 cut(s)	368, 711, 907
BtsI	GCAGTG	2 cut(s)	157, 780
BtsIMutI	CAGTG	3 cut(s)	157, 487, 780
BveI	ACCTGC	1 cut(s)	784
Cac8I	GCNNGC	1 cut(s)	801
CciI	TCATGA	1 cut(s)	886
CfoI	GCGC	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	830
CseI	GACGC	1 cut(s)	15
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	2 cut(s)	568, 887
DdeI	CTNAG	2 cut(s)	132, 786
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
EaeI	YGGCCR	2 cut(s)	105, 697
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Ecl136II	GAGCTC	2 cut(s)	131, 913
Eco130I	CCWWGG	1 cut(s)	567
Eco24I	GRGCYC	2 cut(s)	133, 915
Eco47I	GGWCC	1 cut(s)	830
Eco53kI	GAGCTC	2 cut(s)	131, 913
Eco88I	CYCGRG	1 cut(s)	848
EcoICRI	GAGCTC	2 cut(s)	131, 913
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	567
EcoT38I	GRGCYC	2 cut(s)	133, 915
ErhI	CCWWGG	1 cut(s)	567
FaeI	CATG	2 cut(s)	571, 890
FaiI	YATR	4 cut(s)	449, 569, 642, 888
FaqI	GGGAC	4 cut(s)	300, 348, 560, 867
FatI	CATG	2 cut(s)	567, 886
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	3 cut(s)	355, 718, 914
FriOI	GRGCYC	2 cut(s)	133, 915
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	612
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	5 cut(s)	107, 250, 572, 699, 745
HapII	CCGG	2 cut(s)	120, 469
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	2 cut(s)	5, 26
Hin1II	CATG	2 cut(s)	571, 890
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	6 cut(s)	243, 313, 548, 671, 692, 883
HpaII	CCGG	2 cut(s)	120, 469
HphI	GGTGA	2 cut(s)	46, 617
Hpy166II	GTNNAC	1 cut(s)	30
Hpy188I	TCNGA	3 cut(s)	10, 312, 676
Hpy188III	TCNNGA	5 cut(s)	178, 469, 519, 715, 887
Hpy8I	GTNNAC	1 cut(s)	30
Hpy99I	CGWCG	3 cut(s)	31, 34, 52
HpyAV	CCTTC	6 cut(s)	84, 175, 340, 357, 399, 769
HpyCH4III	ACNGT	4 cut(s)	34, 211, 482, 688
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	2 cut(s)	725, 740
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 104, 191, 602, 737, 796
HpyF3I	CTNAG	2 cut(s)	132, 786
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	2 cut(s)	5, 26
Hsp92II	CATG	2 cut(s)	571, 890
HspAI	GCGC	1 cut(s)	192
Kpn2I	TCCGGA	1 cut(s)	468
Kzo9I	GATC	1 cut(s)	440
LmnI	GCTCC	4 cut(s)	14, 138, 490, 610
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	612
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	2 cut(s)	490, 623
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	6 cut(s)	227, 230, 291, 315, 318, 449
MfeI	CAATTG	1 cut(s)	541
MhlI	GDGCHC	3 cut(s)	133, 487, 915
MlsI	TGGCCA	1 cut(s)	699
MluCI	AATT	7 cut(s)	285, 342, 412, 534, 541, 580, 719
MluNI	TGGCCA	1 cut(s)	699
MlyI	GAGTC	3 cut(s)	322, 542, 680
MmeI	TCCRAC	2 cut(s)	185, 641
Mox20I	TGGCCA	1 cut(s)	699
MroI	TCCGGA	1 cut(s)	468
MscI	TGGCCA	1 cut(s)	699
MseI	TTAA	1 cut(s)	943
Msp20I	TGGCCA	1 cut(s)	699
MspI	CCGG	2 cut(s)	120, 469
MspR9I	CCNGG	2 cut(s)	121, 270
MunI	CAATTG	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	6 cut(s)	23, 104, 191, 602, 737, 796
NciI	CCSGG	1 cut(s)	121
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	2 cut(s)	571, 890
NlaIV	GGNNCC	2 cut(s)	16, 226
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	490, 623
PagI	TCATGA	1 cut(s)	886
PfeI	GAWTC	3 cut(s)	243, 692, 883
PflMI	CCANNNNNTGG	1 cut(s)	806
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	3 cut(s)	321, 542, 679
PpsI	GAGTC	3 cut(s)	321, 542, 679
Psp124BI	GAGCTC	2 cut(s)	133, 915
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	16, 226
PspPI	GGNCC	1 cut(s)	830
SacI	GAGCTC	2 cut(s)	133, 915
SalI	GTCGAC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	943
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	440
Sau96I	GGNCC	1 cut(s)	830
SchI	GAGTC	3 cut(s)	322, 542, 680
ScrFI	CCNGG	2 cut(s)	121, 270
SduI	GDGCHC	3 cut(s)	133, 487, 915
SfaNI	GCATC	1 cut(s)	394
SgrDI	CGTCGACG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	830
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
Sse9I	AATT	7 cut(s)	285, 342, 412, 534, 541, 580, 719
SsiI	CCGC	2 cut(s)	104, 729
SspMI	CTAG	1 cut(s)	612
SstI	GAGCTC	2 cut(s)	133, 915
StyD4I	CCNGG	2 cut(s)	119, 268
StyI	CCWWGG	1 cut(s)	567
TaaI	ACNGT	4 cut(s)	34, 211, 482, 688
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	5 cut(s)	29, 127, 213, 683, 937
TasI	AATT	7 cut(s)	285, 342, 412, 534, 541, 580, 719
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	3 cut(s)	243, 692, 883
Tru1I	TTAA	1 cut(s)	943
Tru9I	TTAA	1 cut(s)	943
TscAI	CASTG	3 cut(s)	164, 487, 787
TseFI	GTSAC	2 cut(s)	490, 623
Tsp45I	GTSAC	2 cut(s)	490, 623
TspDTI	ATGAA	4 cut(s)	405, 722, 875, 903
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	3 cut(s)	164, 487, 787
Van91I	CCANNNNNTGG	1 cut(s)	806
VpaK11BI	GGWCC	1 cut(s)	830
XapI	RAATTY	1 cut(s)	719
XcmI	CCANNNNNNNNNTGG	3 cut(s)	540, 565, 811
XmiI	GTMKAC	1 cut(s)	29
XspI	CTAG	1 cut(s)	612
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.