Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000718.1

Orthogroup ID

OG0005623

Physical Location & Seq

Genomic Coordinates Reverse (-)

124109 .. 132579

Gene Structure 8471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000718.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgttgctgcttcttgacatgggtggcgaaacagaattaggggtggtgggtgctgtagcgctagtggttcggcagcagaggcttggactcaaatctggttggaacaagtggatgggcttgaggaggaagaagatgagaagatgggttaatcggcggagtgaggacatggctgggattaaagccgtgctcaaagatgcagatgagaggcaagtgaaggaggcttccgttaaactatggctggatgatttaaaggacgtgtccaacgagatggaggacgtgttggatgattggaacactgaaattctgaggctacaaattgagaaacaagagaaagaagctggaaatgctcttgatacgactaagaagaagcccgagctagccgagccctcaccacaacctaccccacactacaagctcctgcgctccctgctgccaacctgggcgcccgtgtgcttgcaaccttgctccgccgtgctagttgttgcccctgcagccttgccacaacgcagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

170

Amino Acids

19.2

Weight (kDa)

8.88

Isoelectric Point (pI)

74.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G75080 AT1G75080 AT3G50750
fragaria_vesca	FvH4_2g40170 FvH4_2g40170
malus_domestica	MD08G1035400.v1.1 MD15G1031900.v1.1
prunus_persica	Prupe.1G382900_v2.0.a1
pyrus_communis	pycom15g02760
rosa_chinensis	RchiOBHm_Chr6g0300561
rosa_laevigata	RLG00000011324 RLG00000028760
rosa_multiflora	Rmu_sc0000718.1_g000032 Rmu_sc0002792.1_g000011 Rmu_sc0021182.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167670
rosa_rugosa	Rorug06G0297200
rosa_samantha	Rh3CG341300 Rh6AG409700 Rh6BG417000 Rh6CG424700 Rh6DG410200
rosa_wichuraiana	Rw6G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	442
AciI	CCGC	2 cut(s)	154, 468
AcsI	RAATTY	1 cut(s)	300
AcyI	GRCGYC	1 cut(s)	443
AfeI	AGCGCT	1 cut(s)	60
AflIII	ACRYGT	2 cut(s)	255, 276
AjiI	CACGTC	2 cut(s)	256, 277
AjnI	CCWGG	1 cut(s)	437
AluBI	AGCT	4 cut(s)	338, 376, 415, 510
AluI	AGCT	4 cut(s)	338, 376, 415, 510
Alw21I	GWGCWC	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	371
Aor51HI	AGCGCT	1 cut(s)	60
ApeKI	GCWGC	5 cut(s)	7, 73, 430, 491, 507
ApoI	RAATTY	1 cut(s)	300
AspLEI	GCGC	3 cut(s)	61, 423, 445
AsuHPI	GGTGA	1 cut(s)	381
AsuNHI	GCTAGC	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	85, 417, 503
BccI	CCATC	3 cut(s)	106, 135, 262
BceAI	ACGGC	2 cut(s)	167, 455
BciT130I	CCWGG	1 cut(s)	439
BfaI	CTAG	4 cut(s)	62, 377, 476, 511
BfmI	CTRYAG	2 cut(s)	54, 489
BfoI	RGCGCY	2 cut(s)	62, 446
BisI	GCNGC	5 cut(s)	8, 74, 431, 492, 508
BlsI	GCNGC	5 cut(s)	9, 75, 432, 493, 509
Bme1390I	CCNGG	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	371
BmgBI	CACGTC	2 cut(s)	256, 277
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	439
BmsI	GCATC	1 cut(s)	184
BmtI	GCTAGC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	438
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
BseBI	CCWGG	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	3 cut(s)	117, 247, 289
BseMII	CTCAG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	3 cut(s)	85, 417, 503
BseYI	CCCAGC	1 cut(s)	170
BshNI	GGYRCC	1 cut(s)	442
BsiHKAI	GWGCWC	1 cut(s)	189
BsiHKCI	CYCGRG	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	189, 387
BspACI	CCGC	2 cut(s)	154, 468
BspCNI	CTCAG	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	444
BspMAI	CTGCAG	1 cut(s)	493
BspOI	GCTAGC	1 cut(s)	380
BspT107I	GGYRCC	1 cut(s)	442
BssECI	CCNNGG	1 cut(s)	438
BssNI	GRCGYC	1 cut(s)	443
Bst2UI	CCWGG	1 cut(s)	439
BstACI	GRCGYC	1 cut(s)	443
BstC8I	GCNNGC	2 cut(s)	378, 455
BstDEI	CTNAG	2 cut(s)	305, 360
BstF5I	GGATG	3 cut(s)	117, 247, 289
BstH2I	RGCGCY	2 cut(s)	62, 446
BstHHI	GCGC	3 cut(s)	61, 423, 445
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 344, 382, 427, 491
BstNI	CCWGG	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	437
BstSFI	CTRYAG	2 cut(s)	54, 489
BstV1I	GCAGC	3 cut(s)	85, 417, 503
BstXI	CCANNNNNNTGG	1 cut(s)	268
BtrI	CACGTC	2 cut(s)	256, 277
BtsCI	GGATG	3 cut(s)	117, 247, 289
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	378, 455
CfoI	GCGC	3 cut(s)	61, 423, 445
CviAII	CATG	2 cut(s)	19, 166
DdeI	CTNAG	2 cut(s)	305, 360
DinI	GGCGCC	1 cut(s)	444
DraI	TTTAAA	1 cut(s)	249
EciI	GGCGGA	2 cut(s)	169, 457
Eco24I	GRGCYC	1 cut(s)	387
Eco47III	AGCGCT	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	387
EgeI	GGCGCC	1 cut(s)	444
EheI	GGCGCC	1 cut(s)	444
FaeI	CATG	2 cut(s)	22, 169
FaiI	YATR	3 cut(s)	20, 167, 235
FatI	CATG	2 cut(s)	18, 165
Fnu4HI	GCNGC	5 cut(s)	8, 74, 431, 492, 508
FokI	GGATG	3 cut(s)	124, 254, 296
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	5 cut(s)	8, 74, 431, 492, 508
FspBI	CTAG	4 cut(s)	62, 377, 476, 511
GlaI	GCGC	3 cut(s)	60, 422, 444
GluI	GCNGC	5 cut(s)	8, 74, 431, 492, 508
GsaI	CCCAGC	1 cut(s)	174
HaeII	RGCGCY	2 cut(s)	62, 446
HhaI	GCGC	3 cut(s)	61, 423, 445
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	2 cut(s)	22, 169
Hin6I	GCGC	3 cut(s)	59, 421, 443
HinP1I	GCGC	3 cut(s)	59, 421, 443
HinfI	GANTC	1 cut(s)	87
HphI	GGTGA	1 cut(s)	381
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	2 cut(s)	14, 350
HpyAV	CCTTC	1 cut(s)	208
HpyCH4IV	ACGT	2 cut(s)	255, 276
HpyCH4V	TGCA	3 cut(s)	197, 457, 491
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 344, 382, 427, 491
HpyF3I	CTNAG	2 cut(s)	305, 360
HpySE526I	ACGT	2 cut(s)	255, 276
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	2 cut(s)	22, 169
HspAI	GCGC	3 cut(s)	59, 421, 443
KasI	GGCGCC	1 cut(s)	442
LmnI	GCTCC	3 cut(s)	420, 428, 470
LpnPI	CCDG	9 cut(s)	81, 156, 224, 324, 424, 431, 440, 451, 501
Lsp1109I	GCAGC	3 cut(s)	85, 417, 503
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	4 cut(s)	62, 377, 476, 511
MaeII	ACGT	2 cut(s)	255, 276
MboII	GAAGA	4 cut(s)	139, 142, 150, 376
MhlI	GDGCHC	2 cut(s)	189, 387
MluCI	AATT	3 cut(s)	35, 300, 315
Mly113I	GGCGCC	1 cut(s)	443
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	3 cut(s)	80, 261, 285
MnlI	CCTC	9 cut(s)	72, 114, 117, 154, 198, 211, 265, 300, 397
MseI	TTAA	4 cut(s)	147, 177, 228, 248
MspR9I	CCNGG	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	439
MwoI	GCNNNNNNNGC	5 cut(s)	79, 344, 382, 427, 491
NarI	GGCGCC	1 cut(s)	443
NheI	GCTAGC	1 cut(s)	376
NlaIII	CATG	2 cut(s)	22, 169
NlaIV	GGNNCC	1 cut(s)	444
NmeAIII	GCCGAG	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PkrI	GCNGC	5 cut(s)	9, 75, 432, 493, 509
PleI	GAGTC	1 cut(s)	81
PluTI	GGCGCC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	437
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	444
PstI	CTGCAG	1 cut(s)	493
SaqAI	TTAA	4 cut(s)	147, 177, 228, 248
SatI	GCNGC	5 cut(s)	8, 74, 431, 492, 508
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	439
SduI	GDGCHC	2 cut(s)	189, 387
SetI	ASST	9 cut(s)	258, 279, 340, 378, 400, 417, 440, 463, 512
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	2 cut(s)	54, 489
SfoI	GGCGCC	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	3 cut(s)	35, 300, 315
SsiI	CCGC	2 cut(s)	154, 468
SspDI	GGCGCC	1 cut(s)	442
SspMI	CTAG	4 cut(s)	62, 377, 476, 511
StyD4I	CCNGG	1 cut(s)	437
TaiI	ACGT	2 cut(s)	258, 279
TasI	AATT	3 cut(s)	35, 300, 315
Tru1I	TTAA	4 cut(s)	147, 177, 228, 248
Tru9I	TTAA	4 cut(s)	147, 177, 228, 248
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	5 cut(s)	7, 73, 430, 491, 507
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	300
XspI	CTAG	4 cut(s)	62, 377, 476, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.