Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005623

Physical Location & Seq

Genomic Coordinates Reverse (-)

1933336 .. 1934794

Gene Structure 1459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1031900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGACGTCTGACGGAGCAACGTCAGCGGCGAGGACGGCGCGGAGAAAGCCGTCGTGGCGGGAAAGGGAGAACAACCGGCGGAGAGAGAGGAGGAGGAGAGCCATCGCGGCGAAGATATTCACCGGCCTCCGAGCTCAGGGAAACTTCAACCTGCCCAAGCACTGCGACAACAACGAGGTCCTCAAAGCTCTCTGCCTCCAGGCCGGCTGGACCGTCGAGGTGGACGGCACCACCTACCGAAAGGGATTGAAGCCAATTCAAAATGATACGCCGGGCGCATCGACCAAGATAAGCCCATACTCTTCGCTAAATCCGAGTCCAATCCCGTCCTACCAAGTCAGTCCTTCGTCTTCGTGCTATCCCAGTCCCCCCCGTTTCGATCCCAGCACTAATTCATCCAATCCCTGCCACTATCCCCCTTCTACAATCCCATCACCTCTTCCTCCCCTGCGAATTTCCAACAGTGCCCCTGTAACCCCGCCGCTCTCCTCCCCGACCTCCAAACGCCCCAACCCAATTCCCAACTGGGACTCCATCGCTAAACAGTCCATGGGCTCTTTCGATTACCCGTTTTATGCCATCTCCGCTCCGGCGAGCCCGACCCGCCACCACTATACTCATCCTCCAGCTGCCACTATCCCGGAATGTGACGAGTCCGATACTTCCACCGCAGATTCCGGCCAATGGGTTTGCTTCCAGAGATTTGCTCCTTCTCTGTCGGCAATGCCGGCCTCTCCGACCTTCAATCTTGTGAAGCCTGTTTTTGCTCACCAGAATATTCCCGCGGATCAAATTCCGGACGTAAAGCCGTGGATCGGAGAGAAGATTCACGAGGTGGGACTTGATGACTTGGAGCTCACGCTTGGAAATGGTAAGGCTCGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048532 GO:0048545 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1904961 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

BES1_N

Protein Analysis

296

Amino Acids

32.31

Weight (kDa)

9.35

Isoelectric Point (pI)

66.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BES1_N	PF05687	13 - 130	3.8e-55	BES1/BZR1 plant transcription factor, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G75080 AT1G75080 AT3G50750
fragaria_vesca	FvH4_2g40170 FvH4_2g40170
malus_domestica	MD08G1035400.v1.1 MD15G1031900.v1.1
prunus_persica	Prupe.1G382900_v2.0.a1
pyrus_communis	pycom15g02760
rosa_chinensis	RchiOBHm_Chr6g0300561
rosa_laevigata	RLG00000011324 RLG00000028760
rosa_multiflora	Rmu_sc0000718.1_g000032 Rmu_sc0002792.1_g000011 Rmu_sc0021182.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167670
rosa_rugosa	Rorug06G0297200
rosa_samantha	Rh3CG341300 Rh6AG409700 Rh6BG417000 Rh6CG424700 Rh6DG410200
rosa_wichuraiana	Rw6G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	159
AccB1I	GGYRCC	1 cut(s)	227
AccBSI	CCGCTC	2 cut(s)	484, 587
AccII	CGCG	3 cut(s)	40, 107, 785
AccIII	TCCGGA	1 cut(s)	796
AclWI	GGATC	3 cut(s)	374, 795, 821
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	2 cut(s)	453, 792
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	835
AfiI	CCNNNNNNNGG	3 cut(s)	136, 684, 815
AgsI	TTSAA	4 cut(s)	148, 250, 260, 745
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	4 cut(s)	134, 188, 629, 856
AluI	AGCT	4 cut(s)	134, 188, 629, 856
Alw21I	GWGCWC	2 cut(s)	136, 858
AlwI	GGATC	3 cut(s)	374, 795, 821
Aor13HI	TCCGGA	1 cut(s)	796
AoxI	GGCC	4 cut(s)	124, 201, 679, 729
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	2 cut(s)	453, 792
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	2 cut(s)	40, 278
AspS9I	GGNCC	2 cut(s)	178, 210
AsuC2I	CCSGG	2 cut(s)	273, 641
AsuHPI	GGTGA	3 cut(s)	112, 426, 761
AvaII	GGWCC	2 cut(s)	178, 210
BaeGI	GKGCMC	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	4 cut(s)	136, 557, 599, 858
BauI	CACGAG	1 cut(s)	830
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	2 cut(s)	136, 858
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	4 cut(s)	110, 439, 542, 587
BceAI	ACGGC	4 cut(s)	34, 51, 241, 793
BciT130I	CCWGG	1 cut(s)	200
BcnI	CCSGG	2 cut(s)	273, 641
BfuAI	ACCTGC	1 cut(s)	159
BglI	GCCNNNNNGGC	2 cut(s)	55, 107
BisI	GCNGC	4 cut(s)	27, 108, 482, 630
BlsI	GCNGC	4 cut(s)	28, 109, 483, 631
Bme1390I	CCNGG	3 cut(s)	200, 273, 641
Bme18I	GGWCC	2 cut(s)	178, 210
BmgT120I	GGNCC	2 cut(s)	178, 210
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	200, 273, 641
BmrI	ACTGGG	2 cut(s)	357, 535
BmsI	GCATC	1 cut(s)	287
BmuI	ACTGGG	2 cut(s)	357, 535
BpiI	GAAGAC	1 cut(s)	342
BplI	GAGNNNNNCTC	2 cut(s)	691, 723
BpmI	CTGGAG	2 cut(s)	182, 609
Bpu10I	CCTNAGC	1 cut(s)	135
BpuMI	CCSGG	2 cut(s)	273, 641
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	549, 783, 809
BsaWI	WCCGGW	1 cut(s)	796
BsaXI	ACNNNNNCTCC	4 cut(s)	515, 545, 607, 637
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 684, 815
Bse118I	RCCGGY	4 cut(s)	75, 122, 203, 727
Bse1I	ACTGG	2 cut(s)	363, 530
Bse3DI	GCAATG	1 cut(s)	729
BseAI	TCCGGA	1 cut(s)	796
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	3 cut(s)	549, 783, 809
BseGI	GGATG	2 cut(s)	395, 619
BseLI	CCNNNNNNNGG	3 cut(s)	136, 684, 815
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	363, 530
BseRI	GAGGAG	4 cut(s)	103, 106, 109, 478
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	1 cut(s)	616
BseYI	CCCAGC	1 cut(s)	383
Bsh1236I	CGCG	3 cut(s)	40, 107, 785
BshFI	GGCC	4 cut(s)	126, 203, 681, 731
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	2 cut(s)	136, 858
BsiSI	CCGG	9 cut(s)	76, 123, 204, 272, 590, 641, 678, 728, 797
BslFI	GGGAC	3 cut(s)	351, 542, 852
BslI	CCNNNNNNNGG	3 cut(s)	136, 684, 815
BsmFI	GGGAC	3 cut(s)	351, 542, 852
BsnI	GGCC	4 cut(s)	126, 203, 681, 731
Bsp1286I	GDGCHC	5 cut(s)	136, 469, 557, 599, 858
Bsp13I	TCCGGA	1 cut(s)	796
Bsp143I	GATC	3 cut(s)	379, 787, 813
Bsp19I	CCATGG	1 cut(s)	549
BspANI	GGCC	4 cut(s)	126, 203, 681, 731
BspCNI	CTCAG	1 cut(s)	148
BspEI	TCCGGA	1 cut(s)	796
BspFNI	CGCG	3 cut(s)	40, 107, 785
BspLI	GGNNCC	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	159
BspPI	GGATC	3 cut(s)	374, 795, 821
BspT107I	GGYRCC	1 cut(s)	227
BsrBI	CCGCTC	2 cut(s)	484, 587
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	4 cut(s)	75, 122, 203, 727
BsrI	ACTGG	2 cut(s)	363, 530
BssAI	RCCGGY	4 cut(s)	75, 122, 203, 727
BssECI	CCNNGG	3 cut(s)	549, 783, 809
BssMI	GATC	3 cut(s)	379, 787, 813
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	830
BssT1I	CCWWGG	1 cut(s)	549
Bst2BI	CACGAG	1 cut(s)	830
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	3 cut(s)	214, 464, 546
Bst6I	CTCTTC	2 cut(s)	307, 444
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	205, 595, 729
BstDEI	CTNAG	1 cut(s)	135
BstDSI	CCRYGG	3 cut(s)	549, 783, 809
BstF5I	GGATG	2 cut(s)	395, 619
BstFNI	CGCG	3 cut(s)	40, 107, 785
BstHHI	GCGC	2 cut(s)	40, 278
BstKTI	GATC	3 cut(s)	382, 790, 816
BstMBI	GATC	3 cut(s)	379, 787, 813
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 35, 46, 55, 107, 584, 603, 728
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	3 cut(s)	198, 271, 639
BstSLI	GKGCMC	1 cut(s)	469
BstUI	CGCG	3 cut(s)	40, 107, 785
BstV1I	GCAGC	1 cut(s)	616
BstV2I	GAAGAC	1 cut(s)	342
BsuRI	GGCC	4 cut(s)	126, 203, 681, 731
BtgI	CCRYGG	3 cut(s)	549, 783, 809
BtgZI	GCGATG	2 cut(s)	88, 520
BtsCI	GGATG	2 cut(s)	395, 619
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	160, 469
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	3 cut(s)	205, 595, 729
CfoI	GCGC	2 cut(s)	40, 278
Cfr10I	RCCGGY	4 cut(s)	75, 122, 203, 727
Cfr13I	GGNCC	2 cut(s)	178, 210
Cfr42I	CCGCGG	1 cut(s)	786
CviAII	CATG	1 cut(s)	550
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	3 cut(s)	381, 789, 815
DpnII	GATC	3 cut(s)	379, 787, 813
DraIII	CACNNNGTG	1 cut(s)	835
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	2 cut(s)	307, 444
EarI	CTCTTC	2 cut(s)	307, 444
EciI	GGCGGA	1 cut(s)	94
Ecl136II	GAGCTC	2 cut(s)	134, 856
Eco130I	CCWWGG	1 cut(s)	549
Eco24I	GRGCYC	4 cut(s)	136, 557, 599, 858
Eco47I	GGWCC	2 cut(s)	178, 210
Eco53kI	GAGCTC	2 cut(s)	134, 856
EcoICRI	GAGCTC	2 cut(s)	134, 856
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	4 cut(s)	136, 557, 599, 858
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	1 cut(s)	553
FaiI	YATR	4 cut(s)	298, 551, 576, 615
FaqI	GGGAC	3 cut(s)	351, 542, 852
FatI	CATG	1 cut(s)	549
FauI	CCCGC	4 cut(s)	51, 486, 611, 790
Fnu4HI	GCNGC	4 cut(s)	27, 108, 482, 630
FokI	GGATG	2 cut(s)	382, 606
FriOI	GRGCYC	4 cut(s)	136, 557, 599, 858
Fsp4HI	GCNGC	4 cut(s)	27, 108, 482, 630
GlaI	GCGC	2 cut(s)	39, 277
GluI	GCNGC	4 cut(s)	27, 108, 482, 630
GsaI	CCCAGC	1 cut(s)	387
GsuI	CTGGAG	2 cut(s)	182, 609
HaeIII	GGCC	4 cut(s)	126, 203, 681, 731
HapII	CCGG	9 cut(s)	76, 123, 204, 272, 590, 641, 678, 728, 797
HhaI	GCGC	2 cut(s)	40, 278
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	553
Hin6I	GCGC	2 cut(s)	38, 276
HinP1I	GCGC	2 cut(s)	38, 276
HinfI	GANTC	5 cut(s)	316, 530, 653, 674, 826
HpaII	CCGG	9 cut(s)	76, 123, 204, 272, 590, 641, 678, 728, 797
HphI	GGTGA	3 cut(s)	112, 426, 761
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	7 cut(s)	10, 131, 315, 658, 738, 818, 882
Hpy188III	TCNNGA	3 cut(s)	697, 797, 830
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	2 cut(s)	55, 218
HpyAV	CCTTC	4 cut(s)	354, 429, 720, 751
HpyCH4III	ACNGT	3 cut(s)	214, 464, 546
HpyCH4IV	ACGT	3 cut(s)	5, 20, 801
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 35, 46, 55, 107, 584, 603, 728
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	3 cut(s)	5, 20, 801
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	553
HspAI	GCGC	2 cut(s)	38, 276
Kpn2I	TCCGGA	1 cut(s)	796
KroI	GCCGGC	2 cut(s)	203, 727
KroNI	GCCGGC	2 cut(s)	205, 729
KspI	CCGCGG	1 cut(s)	786
Kzo9I	GATC	3 cut(s)	379, 787, 813
LmnI	GCTCC	4 cut(s)	14, 592, 712, 853
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	1 cut(s)	287
MaeII	ACGT	3 cut(s)	5, 20, 801
MaeIII	GTNAC	2 cut(s)	472, 647
MalI	GATC	3 cut(s)	381, 789, 815
MbiI	CCGCTC	2 cut(s)	484, 587
MboI	GATC	3 cut(s)	379, 787, 813
MboII	GAAGA	5 cut(s)	124, 294, 342, 431, 835
MhlI	GDGCHC	5 cut(s)	136, 469, 557, 599, 858
MluCI	AATT	5 cut(s)	255, 391, 453, 516, 792
MlyI	GAGTC	3 cut(s)	325, 524, 662
MmeI	TCCRAC	2 cut(s)	483, 761
MroI	TCCGGA	1 cut(s)	796
MroNI	GCCGGC	2 cut(s)	203, 727
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	886
MspA1I	CMGCKG	3 cut(s)	26, 629, 785
MspI	CCGG	9 cut(s)	76, 123, 204, 272, 590, 641, 678, 728, 797
MspR9I	CCNGG	3 cut(s)	200, 273, 641
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	3 cut(s)	40, 107, 785
MwoI	GCNNNNNNNGC	8 cut(s)	23, 35, 46, 55, 107, 584, 603, 728
NaeI	GCCGGC	2 cut(s)	205, 729
NciI	CCSGG	2 cut(s)	273, 641
NcoI	CCATGG	1 cut(s)	549
NdeII	GATC	3 cut(s)	379, 787, 813
NgoMIV	GCCGGC	2 cut(s)	203, 727
NlaIII	CATG	1 cut(s)	553
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	647
PcsI	WCGNNNNNNNCGW	2 cut(s)	26, 311
PdiI	GCCGGC	2 cut(s)	205, 729
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	674, 826
PfoI	TCCNGGA	1 cut(s)	639
PkrI	GCNGC	4 cut(s)	28, 109, 483, 631
PleI	GAGTC	3 cut(s)	324, 524, 661
PpsI	GAGTC	3 cut(s)	324, 524, 661
PpuMI	RGGWCCY	1 cut(s)	178
Psp124BI	GAGCTC	2 cut(s)	136, 858
Psp5II	RGGWCCY	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	2 cut(s)	178, 210
PspPPI	RGGWCCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	629
SacI	GAGCTC	2 cut(s)	136, 858
SacII	CCGCGG	1 cut(s)	786
SaqAI	TTAA	1 cut(s)	886
SatI	GCNGC	4 cut(s)	27, 108, 482, 630
Sau3AI	GATC	3 cut(s)	379, 787, 813
Sau96I	GGNCC	2 cut(s)	178, 210
SchI	GAGTC	3 cut(s)	325, 524, 662
ScrFI	CCNGG	3 cut(s)	200, 273, 641
SduI	GDGCHC	5 cut(s)	136, 469, 557, 599, 858
SfaNI	GCATC	1 cut(s)	287
Sfr303I	CCGCGG	1 cut(s)	786
SgrBI	CCGCGG	1 cut(s)	786
SinI	GGWCC	2 cut(s)	178, 210
Sse9I	AATT	5 cut(s)	255, 391, 453, 516, 792
SspI	AATATT	1 cut(s)	778
SstI	GAGCTC	2 cut(s)	136, 858
StyD4I	CCNGG	3 cut(s)	198, 271, 639
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	3 cut(s)	214, 464, 546
TaiI	ACGT	3 cut(s)	8, 23, 804
TaqI	TCGA	4 cut(s)	216, 281, 378, 561
TasI	AATT	5 cut(s)	255, 391, 453, 516, 792
TauI	GCSGC	3 cut(s)	29, 110, 484
TfiI	GAWTC	2 cut(s)	674, 826
Tru1I	TTAA	1 cut(s)	886
Tru9I	TTAA	1 cut(s)	886
TscAI	CASTG	2 cut(s)	167, 469
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	2 cut(s)	167, 469
VpaK11BI	GGWCC	2 cut(s)	178, 210
XapI	RAATTY	2 cut(s)	453, 792
XcmI	CCANNNNNNNNNTGG	1 cut(s)	522
XmnI	GAANNNNTTC	1 cut(s)	116
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.