Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005623

Physical Location & Seq

Genomic Coordinates Reverse (-)

1690795 .. 1691727

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGACGTCGGATGGGGCAACGTCAGCGGCGACGACCGCGCGGAGGAAGCCGTCGTGGCGGGAGAGGGAGAACAACCGGCGGAGAGAGAGGAGGAGGAGAGCCATCGCGGCGAAGATATTCACGGGCCTCCGAGCTCAGGGCAACTTCAACTTGCCCAAGCACTGCGACAACAACGAGGTCCTCAAAGCTCTCTGCCTCCAGGCCGGCTGGACCGTCGAGGTCGACGGCACCACCTACCGAAAGGGATTGAAGCCAATTCAAACTGATACGCCGGGCGCATCAACCAAGATCAGCCCGTACTCTTCGCTAAATCCGAGTCCAATCCCGTCCTACCAAGTCAGTCCTTCGTCTTCGTCCTATCCCAGTCCCACCCGTTTCGATGCCAGCACTAATTCATCCAATCCCATCCACCATCCCCGTTCTGCAATCCCATCATCTCTTCCTCCCCTGCGAATTTCCAACAGTGCCCCTGTAACCCCGCCGCTCTCCTCCCCGACCTCCAAACGCCCCAACCCAATTCCCAACTGGGACTCCATCGCTAAACAGTCCATGGGCTCTTTCGATTACCCGTTTTACGCCATCTCCGCTCCGGCGAGCCCGACCCGCCACCACTATACTCATCCTCCAGCTGCCACTATCCCGGAATGTGACGAGTCCGATACTTCCACTGCCGATTCCGGCCAATGGGTTTGCTTCCAGAGATTTGCTCCTTCTCTGTCGGCAATGCCGGCCTCTCCGACCCTCAATCTTGTGAAGCCTGTTTTCCCTCACCAGAATATTCCCGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048532 GO:0048545 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1904961 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

BES1_N

Protein Analysis

264

Amino Acids

28.69

Weight (kDa)

9.79

Isoelectric Point (pI)

70.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G75080 AT1G75080 AT3G50750
fragaria_vesca	FvH4_2g40170 FvH4_2g40170
malus_domestica	MD08G1035400.v1.1 MD15G1031900.v1.1
prunus_persica	Prupe.1G382900_v2.0.a1
pyrus_communis	pycom15g02760
rosa_chinensis	RchiOBHm_Chr6g0300561
rosa_laevigata	RLG00000011324 RLG00000028760
rosa_multiflora	Rmu_sc0000718.1_g000032 Rmu_sc0002792.1_g000011 Rmu_sc0021182.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167670
rosa_rugosa	Rorug06G0297200
rosa_samantha	Rh3CG341300 Rh6AG409700 Rh6BG417000 Rh6CG424700 Rh6DG410200
rosa_wichuraiana	Rw6G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	227
AccBSI	CCGCTC	2 cut(s)	484, 587
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	3 cut(s)	38, 40, 107
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	3 cut(s)	42, 136, 684
AgsI	TTSAA	3 cut(s)	148, 250, 260
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	3 cut(s)	134, 188, 629
AluI	AGCT	3 cut(s)	134, 188, 629
Alw21I	GWGCWC	1 cut(s)	136
AoxI	GGCC	4 cut(s)	124, 201, 679, 729
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	2 cut(s)	40, 278
AspS9I	GGNCC	3 cut(s)	124, 178, 210
AsuC2I	CCSGG	2 cut(s)	273, 641
AsuHPI	GGTGA	1 cut(s)	761
AvaII	GGWCC	2 cut(s)	178, 210
BaeGI	GKGCMC	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	227
BanII	GRGCYC	3 cut(s)	136, 557, 599
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	7 cut(s)	5, 110, 413, 420, 439, 542, 587
BceAI	ACGGC	2 cut(s)	34, 241
BciT130I	CCWGG	1 cut(s)	200
BcnI	CCSGG	2 cut(s)	273, 641
BglI	GCCNNNNNGGC	2 cut(s)	55, 107
BisI	GCNGC	4 cut(s)	27, 108, 482, 630
BlsI	GCNGC	4 cut(s)	28, 109, 483, 631
Bme1390I	CCNGG	3 cut(s)	200, 273, 641
Bme18I	GGWCC	2 cut(s)	178, 210
BmgT120I	GGNCC	3 cut(s)	124, 178, 210
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	200, 273, 641
BmrI	ACTGGG	2 cut(s)	357, 535
BmsI	GCATC	2 cut(s)	287, 370
BmuI	ACTGGG	2 cut(s)	357, 535
BpiI	GAAGAC	1 cut(s)	342
BplI	GAGNNNNNCTC	2 cut(s)	691, 723
BpmI	CTGGAG	2 cut(s)	182, 609
Bpu10I	CCTNAGC	1 cut(s)	135
BpuMI	CCSGG	2 cut(s)	273, 641
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	549, 783
BsaXI	ACNNNNNCTCC	6 cut(s)	515, 545, 566, 596, 607, 637
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 136, 684
Bse118I	RCCGGY	3 cut(s)	75, 203, 727
Bse1I	ACTGG	2 cut(s)	363, 530
Bse3DI	GCAATG	1 cut(s)	729
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	549, 783
BseGI	GGATG	5 cut(s)	16, 395, 405, 412, 619
BseLI	CCNNNNNNNGG	3 cut(s)	42, 136, 684
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	363, 530
BseRI	GAGGAG	4 cut(s)	103, 106, 109, 478
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	1 cut(s)	616
Bsh1236I	CGCG	3 cut(s)	38, 40, 107
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	4 cut(s)	126, 203, 681, 731
BshNI	GGYRCC	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	7 cut(s)	76, 204, 272, 590, 641, 678, 728
BslFI	GGGAC	2 cut(s)	351, 542
BslI	CCNNNNNNNGG	3 cut(s)	42, 136, 684
BsmFI	GGGAC	2 cut(s)	351, 542
BsnI	GGCC	4 cut(s)	126, 203, 681, 731
Bsp1286I	GDGCHC	4 cut(s)	136, 469, 557, 599
Bsp143I	GATC	1 cut(s)	288
Bsp19I	CCATGG	1 cut(s)	549
BspANI	GGCC	4 cut(s)	126, 203, 681, 731
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	3 cut(s)	38, 40, 107
BspLI	GGNNCC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	227
BsrBI	CCGCTC	2 cut(s)	484, 587
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	3 cut(s)	75, 203, 727
BsrI	ACTGG	2 cut(s)	363, 530
BssAI	RCCGGY	3 cut(s)	75, 203, 727
BssECI	CCNNGG	2 cut(s)	549, 783
BssMI	GATC	1 cut(s)	288
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	3 cut(s)	214, 464, 546
Bst6I	CTCTTC	2 cut(s)	307, 444
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	4 cut(s)	205, 385, 595, 729
BstDEI	CTNAG	1 cut(s)	135
BstDSI	CCRYGG	2 cut(s)	549, 783
BstF5I	GGATG	5 cut(s)	16, 395, 405, 412, 619
BstFNI	CGCG	3 cut(s)	38, 40, 107
BstHHI	GCGC	2 cut(s)	40, 278
BstKTI	GATC	1 cut(s)	291
BstMBI	GATC	1 cut(s)	288
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 35, 46, 55, 107, 584, 603, 728
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	3 cut(s)	198, 271, 639
BstSLI	GKGCMC	1 cut(s)	469
BstUI	CGCG	3 cut(s)	38, 40, 107
BstV1I	GCAGC	1 cut(s)	616
BstV2I	GAAGAC	1 cut(s)	342
BsuRI	GGCC	4 cut(s)	126, 203, 681, 731
BtgI	CCRYGG	2 cut(s)	549, 783
BtgZI	GCGATG	2 cut(s)	88, 520
BtsCI	GGATG	5 cut(s)	16, 395, 405, 412, 619
BtsI	GCAGTG	2 cut(s)	160, 666
BtsIMutI	CAGTG	3 cut(s)	160, 469, 666
Cac8I	GCNNGC	4 cut(s)	205, 385, 595, 729
CfoI	GCGC	2 cut(s)	40, 278
Cfr10I	RCCGGY	3 cut(s)	75, 203, 727
Cfr13I	GGNCC	3 cut(s)	124, 178, 210
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	550
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	1 cut(s)	290
DpnII	GATC	1 cut(s)	288
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	2 cut(s)	307, 444
EarI	CTCTTC	2 cut(s)	307, 444
EciI	GGCGGA	1 cut(s)	94
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	549
Eco24I	GRGCYC	3 cut(s)	136, 557, 599
Eco47I	GGWCC	2 cut(s)	178, 210
Eco53kI	GAGCTC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	3 cut(s)	136, 557, 599
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	1 cut(s)	553
FaiI	YATR	2 cut(s)	551, 615
FaqI	GGGAC	2 cut(s)	351, 542
FatI	CATG	1 cut(s)	549
FauI	CCCGC	3 cut(s)	51, 486, 611
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	4 cut(s)	27, 108, 482, 630
FokI	GGATG	5 cut(s)	23, 382, 392, 399, 606
FriOI	GRGCYC	3 cut(s)	136, 557, 599
Fsp4HI	GCNGC	4 cut(s)	27, 108, 482, 630
GlaI	GCGC	2 cut(s)	39, 277
GluI	GCNGC	4 cut(s)	27, 108, 482, 630
GsuI	CTGGAG	2 cut(s)	182, 609
HaeIII	GGCC	4 cut(s)	126, 203, 681, 731
HapII	CCGG	7 cut(s)	76, 204, 272, 590, 641, 678, 728
HhaI	GCGC	2 cut(s)	40, 278
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	553
Hin6I	GCGC	2 cut(s)	38, 276
HinP1I	GCGC	2 cut(s)	38, 276
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	4 cut(s)	316, 530, 653, 674
HpaII	CCGG	7 cut(s)	76, 204, 272, 590, 641, 678, 728
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	5 cut(s)	10, 131, 315, 658, 738
Hpy188III	TCNNGA	1 cut(s)	697
Hpy8I	GTNNAC	1 cut(s)	223
Hpy99I	CGWCG	5 cut(s)	10, 34, 55, 218, 227
HpyAV	CCTTC	2 cut(s)	354, 720
HpyCH4III	ACNGT	3 cut(s)	214, 464, 546
HpyCH4IV	ACGT	2 cut(s)	5, 20
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 35, 46, 55, 107, 584, 603, 728
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	2 cut(s)	5, 20
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	553
HspAI	GCGC	2 cut(s)	38, 276
KroI	GCCGGC	2 cut(s)	203, 727
KroNI	GCCGGC	2 cut(s)	205, 729
Kzo9I	GATC	1 cut(s)	288
LmnI	GCTCC	2 cut(s)	592, 712
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	2 cut(s)	287, 370
MaeII	ACGT	2 cut(s)	5, 20
MaeIII	GTNAC	2 cut(s)	472, 647
MalI	GATC	1 cut(s)	290
MbiI	CCGCTC	2 cut(s)	484, 587
MboI	GATC	1 cut(s)	288
MboII	GAAGA	4 cut(s)	124, 294, 342, 431
MhlI	GDGCHC	4 cut(s)	136, 469, 557, 599
MluCI	AATT	4 cut(s)	255, 391, 453, 516
MlyI	GAGTC	3 cut(s)	325, 524, 662
MmeI	TCCRAC	2 cut(s)	483, 761
MroNI	GCCGGC	2 cut(s)	203, 727
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	790
MspA1I	CMGCKG	2 cut(s)	26, 629
MspI	CCGG	7 cut(s)	76, 204, 272, 590, 641, 678, 728
MspR9I	CCNGG	3 cut(s)	200, 273, 641
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	3 cut(s)	38, 40, 107
MwoI	GCNNNNNNNGC	8 cut(s)	23, 35, 46, 55, 107, 584, 603, 728
NaeI	GCCGGC	2 cut(s)	205, 729
NciI	CCSGG	2 cut(s)	273, 641
NcoI	CCATGG	1 cut(s)	549
NdeII	GATC	1 cut(s)	288
NgoMIV	GCCGGC	2 cut(s)	203, 727
NlaIII	CATG	1 cut(s)	553
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	647
PcsI	WCGNNNNNNNCGW	2 cut(s)	26, 311
PdiI	GCCGGC	2 cut(s)	205, 729
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	674
PfoI	TCCNGGA	1 cut(s)	639
PkrI	GCNGC	4 cut(s)	28, 109, 483, 631
PleI	GAGTC	3 cut(s)	324, 524, 661
PpsI	GAGTC	3 cut(s)	324, 524, 661
PpuMI	RGGWCCY	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	3 cut(s)	124, 178, 210
PspPPI	RGGWCCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SacI	GAGCTC	1 cut(s)	136
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	790
SatI	GCNGC	4 cut(s)	27, 108, 482, 630
Sau3AI	GATC	1 cut(s)	288
Sau96I	GGNCC	3 cut(s)	124, 178, 210
SchI	GAGTC	3 cut(s)	325, 524, 662
ScrFI	CCNGG	3 cut(s)	200, 273, 641
SduI	GDGCHC	4 cut(s)	136, 469, 557, 599
SetI	ASST	9 cut(s)	8, 23, 136, 180, 190, 222, 236, 500, 631
SfaNI	GCATC	2 cut(s)	287, 370
SinI	GGWCC	2 cut(s)	178, 210
Sse9I	AATT	4 cut(s)	255, 391, 453, 516
SspI	AATATT	1 cut(s)	778
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	3 cut(s)	198, 271, 639
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	3 cut(s)	214, 464, 546
TaiI	ACGT	2 cut(s)	8, 23
TaqI	TCGA	4 cut(s)	216, 222, 378, 561
TasI	AATT	4 cut(s)	255, 391, 453, 516
TauI	GCSGC	3 cut(s)	29, 110, 484
TfiI	GAWTC	1 cut(s)	674
Tru1I	TTAA	1 cut(s)	790
Tru9I	TTAA	1 cut(s)	790
TscAI	CASTG	3 cut(s)	167, 469, 673
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	3 cut(s)	167, 469, 673
VpaK11BI	GGWCC	2 cut(s)	178, 210
XapI	RAATTY	1 cut(s)	453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	522
XmiI	GTMKAC	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	116
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.