Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005623

Physical Location & Seq

Genomic Coordinates Reverse (-)

8596273 .. 8597623

Gene Structure 1351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGACTTCAGACGGAGCCACCTCGGCGTCGACGGTTAGGAGAAAGCCTTCGTGGCGAGAAAGAGAGAATAACAGGAGGAGAGAGAGGAGAAGGAGGGCGATTGCGGCGAAGATATTCGCCGGGCTTCGAGCTCAGGGGAGCTTCAACTTGCCCAAGCACTGCGACAACAACGAGGTCCTGAAGGCTCTCTGCGTCGAGGCCGGTTGGACTGTTGAAGAAGACGGCACCACTTATCGAAAGGGATTCAAGCCACCCCCAACGGATACACCAGGCACTTCGACCAAAGTTACACCCTATTCTTCTCTGAATCCGAGTCCACTATCTTCTTCCTTTCCAAGTCCAATTCCTTCCTACCAAGCCAGCCCCTCATCCTCTTCTTTTCCAAGCCCATCTCGTTGCTTTGATGCCACCAATTCATCAAATCTGTTTCCCAATCTGCGATCTGCTATACCTTCTTCTCTTCCTCCTCTCCGGATTTCTAATAGTGCCCCTGTGACCCCTCCACTCTCATCCCCCAACTCGAGAAAGTGCCAACCAATTCCCAATTGGGACTCCATTGCCAAACAATCCATGGCCTCTTTCAATTACCCATTTTACGCCGTGTCTGCTCCAGCTAGTCCGACTCGTCACCAACATCAACTCCATACTCCTCCCACCATTTTTGAATGTGATGAGTCTGATACTTCAACTGTTGAATCTGGCCAATGGATGAACTTCCAGAAATTTGCAACCGCCTTGTCCGCAAGGCCAACCTCTCCGACCTTCAATCTTGTGAAACCTGTCACTGCTCAGCAAAACTTGCCAGCTAATGGAATGGCAGAGATGGGGAGAGGATCAGAGTTTGAGTTTCTCGGGGAACAAGTGAAGCCATGGGTTGGGGAGAGGATTCATGAGGTGGGTTTGGATGATTTAGAGCTCACACTTGGCAATGGTAAGGCCCGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048532 GO:0048545 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1904961 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

BES1_N

Protein Analysis

316

Amino Acids

34.47

Weight (kDa)

9.37

Isoelectric Point (pI)

62.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BES1_N	PF05687	13 - 138	4e-61	BES1/BZR1 plant transcription factor, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G75080 AT1G75080 AT3G50750
fragaria_vesca	FvH4_2g40170 FvH4_2g40170
malus_domestica	MD08G1035400.v1.1 MD15G1031900.v1.1
prunus_persica	Prupe.1G382900_v2.0.a1
pyrus_communis	pycom15g02760
rosa_chinensis	RchiOBHm_Chr6g0300561
rosa_laevigata	RLG00000011324 RLG00000028760
rosa_multiflora	Rmu_sc0000718.1_g000032 Rmu_sc0002792.1_g000011 Rmu_sc0021182.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167670
rosa_rugosa	Rorug06G0297200
rosa_samantha	Rh3CG341300 Rh6AG409700 Rh6BG417000 Rh6CG424700 Rh6DG410200
rosa_wichuraiana	Rw6G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	224
AccB7I	CCANNNNNTGG	2 cut(s)	809, 875
AccI	GTMKAC	1 cut(s)	29
AccIII	TCCGGA	1 cut(s)	471
AciI	CCGC	3 cut(s)	104, 732, 741
AclWI	GGATC	1 cut(s)	841
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	1 cut(s)	722
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	809, 875
AgsI	TTSAA	8 cut(s)	145, 215, 247, 583, 665, 687, 695, 766
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	5 cut(s)	131, 141, 614, 806, 916
AluI	AGCT	5 cut(s)	131, 141, 614, 806, 916
Alw21I	GWGCWC	2 cut(s)	133, 918
AlwI	GGATC	1 cut(s)	841
Ama87I	CYCGRG	2 cut(s)	520, 851
Aor13HI	TCCGGA	1 cut(s)	471
AoxI	GGCC	5 cut(s)	198, 573, 700, 746, 936
ApoI	RAATTY	1 cut(s)	722
Asp700I	GAANNNNTTC	2 cut(s)	46, 113
AspS9I	GGNCC	2 cut(s)	175, 937
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	620
AvaI	CYCGRG	2 cut(s)	520, 851
AvaII	GGWCC	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	702
BanI	GGYRCC	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	133, 918
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	2 cut(s)	133, 918
BccI	CCATC	2 cut(s)	397, 817
BceAI	ACGGC	2 cut(s)	238, 584
BciT130I	CCWGG	1 cut(s)	270
BciVI	GTATCC	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	121
BfaI	CTAG	1 cut(s)	615
BfuI	GTATCC	1 cut(s)	256
BglI	GCCNNNNNGGC	2 cut(s)	23, 52
BisI	GCNGC	1 cut(s)	105
BlpI	GCTNAGC	1 cut(s)	789
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	2 cut(s)	121, 270
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	2 cut(s)	520, 851
BmgT120I	GGNCC	2 cut(s)	175, 937
BmiI	GGNNCC	2 cut(s)	16, 226
BmrFI	CCNGG	2 cut(s)	121, 270
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	132
Bpu1102I	GCTNAGC	1 cut(s)	789
BpuMI	CCSGG	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	21, 570, 869
BsaWI	WCCGGW	1 cut(s)	471
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	2 cut(s)	809, 875
Bse118I	RCCGGY	1 cut(s)	200
Bse3DI	GCAATG	2 cut(s)	555, 934
BseAI	TCCGGA	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	3 cut(s)	21, 570, 869
BseGI	GGATG	4 cut(s)	368, 509, 714, 910
BseLI	CCNNNNNNNGG	2 cut(s)	809, 875
BseMI	GCAATG	2 cut(s)	555, 934
BseMII	CTCAG	2 cut(s)	146, 803
BseRI	GAGGAG	4 cut(s)	91, 100, 456, 639
BseSI	GKGCMC	1 cut(s)	490
BshFI	GGCC	5 cut(s)	200, 575, 702, 748, 938
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	2 cut(s)	133, 918
BsiHKCI	CYCGRG	2 cut(s)	520, 851
BsiSI	CCGG	3 cut(s)	120, 201, 472
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	2 cut(s)	809, 875
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	5 cut(s)	200, 575, 702, 748, 938
BsoBI	CYCGRG	2 cut(s)	520, 851
Bsp1286I	GDGCHC	3 cut(s)	133, 490, 918
Bsp13I	TCCGGA	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	440, 833
Bsp1720I	GCTNAGC	1 cut(s)	789
Bsp19I	CCATGG	2 cut(s)	570, 869
BspACI	CCGC	3 cut(s)	104, 732, 741
BspANI	GGCC	5 cut(s)	200, 575, 702, 748, 938
BspCNI	CTCAG	2 cut(s)	145, 802
BspEI	TCCGGA	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	889
BspLI	GGNNCC	2 cut(s)	16, 226
BspPI	GGATC	1 cut(s)	841
BspT107I	GGYRCC	1 cut(s)	224
BsrDI	GCAATG	2 cut(s)	555, 934
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	21, 570, 869
BssMI	GATC	2 cut(s)	440, 833
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	2 cut(s)	570, 869
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	3 cut(s)	34, 211, 691
Bst6I	CTCTTC	2 cut(s)	379, 465
BstACI	GRCGYC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	799
BstC8I	GCNNGC	2 cut(s)	361, 804
BstDEI	CTNAG	2 cut(s)	132, 789
BstDSI	CCRYGG	2 cut(s)	570, 869
BstF5I	GGATG	4 cut(s)	368, 509, 714, 910
BstKTI	GATC	2 cut(s)	443, 836
BstMBI	GATC	2 cut(s)	440, 833
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 52, 104, 605, 740, 799
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	2 cut(s)	119, 268
BstSLI	GKGCMC	1 cut(s)	490
BstV2I	GAAGAC	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	5 cut(s)	200, 575, 702, 748, 938
BtgI	CCRYGG	2 cut(s)	570, 869
BtsCI	GGATG	4 cut(s)	368, 509, 714, 910
BtsI	GCAGTG	2 cut(s)	157, 783
BtsIMutI	CAGTG	2 cut(s)	157, 783
Cac8I	GCNNGC	2 cut(s)	361, 804
CciI	TCATGA	1 cut(s)	889
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	175, 937
CseI	GACGC	2 cut(s)	15, 181
CspCI	CAANNNNNGTGG	2 cut(s)	643, 678
CviAII	CATG	3 cut(s)	571, 870, 890
DdeI	CTNAG	2 cut(s)	132, 789
DpnI	GATC	2 cut(s)	442, 835
DpnII	GATC	2 cut(s)	440, 833
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	2 cut(s)	379, 465
EarI	CTCTTC	2 cut(s)	379, 465
Ecl136II	GAGCTC	2 cut(s)	131, 916
Eco130I	CCWWGG	2 cut(s)	570, 869
Eco24I	GRGCYC	2 cut(s)	133, 918
Eco47I	GGWCC	1 cut(s)	175
Eco53kI	GAGCTC	2 cut(s)	131, 916
Eco57I	CTGAAG	1 cut(s)	200
Eco88I	CYCGRG	2 cut(s)	520, 851
EcoICRI	GAGCTC	2 cut(s)	131, 916
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	2 cut(s)	570, 869
EcoT38I	GRGCYC	2 cut(s)	133, 918
ErhI	CCWWGG	2 cut(s)	570, 869
FaeI	CATG	3 cut(s)	574, 873, 893
FaiI	YATR	5 cut(s)	449, 572, 645, 871, 891
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	3 cut(s)	570, 869, 889
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	4 cut(s)	355, 496, 721, 917
FriOI	GRGCYC	2 cut(s)	133, 918
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	5 cut(s)	200, 575, 702, 748, 938
HapII	CCGG	3 cut(s)	120, 201, 472
HgaI	GACGC	2 cut(s)	15, 181
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	574, 873, 893
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	8 cut(s)	243, 307, 313, 551, 622, 674, 695, 886
HpaII	CCGG	3 cut(s)	120, 201, 472
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	2 cut(s)	30, 317
Hpy188I	TCNGA	7 cut(s)	10, 306, 312, 621, 679, 759, 838
Hpy188III	TCNNGA	5 cut(s)	178, 472, 522, 718, 890
Hpy8I	GTNNAC	2 cut(s)	30, 317
Hpy99I	CGWCG	3 cut(s)	31, 34, 197
HpyAV	CCTTC	6 cut(s)	57, 84, 175, 357, 462, 772
HpyCH4III	ACNGT	3 cut(s)	34, 211, 691
HpyCH4V	TGCA	1 cut(s)	728
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 52, 104, 605, 740, 799
HpyF3I	CTNAG	2 cut(s)	132, 789
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	3 cut(s)	574, 873, 893
Kpn2I	TCCGGA	1 cut(s)	471
Kzo9I	GATC	2 cut(s)	440, 833
LmnI	GCTCC	3 cut(s)	14, 138, 613
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	615
MaeIII	GTNAC	4 cut(s)	286, 493, 626, 781
MalI	GATC	2 cut(s)	442, 835
MboI	GATC	2 cut(s)	440, 833
MboII	GAAGA	9 cut(s)	121, 227, 230, 291, 315, 318, 366, 447, 452
MfeI	CAATTG	1 cut(s)	544
MhlI	GDGCHC	3 cut(s)	133, 490, 918
MlsI	TGGCCA	1 cut(s)	702
MluCI	AATT	6 cut(s)	342, 412, 537, 544, 583, 722
MluNI	TGGCCA	1 cut(s)	702
MlyI	GAGTC	4 cut(s)	322, 545, 616, 683
MmeI	TCCRAC	3 cut(s)	185, 644, 782
Mox20I	TGGCCA	1 cut(s)	702
MroI	TCCGGA	1 cut(s)	471
MroXI	GAANNNNTTC	2 cut(s)	46, 113
MscI	TGGCCA	1 cut(s)	702
Msp20I	TGGCCA	1 cut(s)	702
MspI	CCGG	3 cut(s)	120, 201, 472
MspR9I	CCNGG	2 cut(s)	121, 270
MunI	CAATTG	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	6 cut(s)	23, 52, 104, 605, 740, 799
NciI	CCSGG	1 cut(s)	121
NcoI	CCATGG	2 cut(s)	570, 869
NdeII	GATC	2 cut(s)	440, 833
NlaIII	CATG	3 cut(s)	574, 873, 893
NlaIV	GGNNCC	2 cut(s)	16, 226
NmuCI	GTSAC	3 cut(s)	493, 626, 781
PaeR7I	CTCGAG	1 cut(s)	520
PagI	TCATGA	1 cut(s)	889
PdmI	GAANNNNTTC	2 cut(s)	46, 113
PfeI	GAWTC	4 cut(s)	243, 307, 695, 886
PflMI	CCANNNNNTGG	2 cut(s)	809, 875
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	4 cut(s)	321, 545, 616, 682
PpsI	GAGTC	4 cut(s)	321, 545, 616, 682
PpuMI	RGGWCCY	1 cut(s)	175
Psp124BI	GAGCTC	2 cut(s)	133, 918
Psp5II	RGGWCCY	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	2 cut(s)	16, 226
PspPI	GGNCC	2 cut(s)	175, 937
PspPPI	RGGWCCY	1 cut(s)	175
SacI	GAGCTC	2 cut(s)	133, 918
SalI	GTCGAC	1 cut(s)	28
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	440, 833
Sau96I	GGNCC	2 cut(s)	175, 937
SchI	GAGTC	4 cut(s)	322, 545, 616, 683
ScrFI	CCNGG	2 cut(s)	121, 270
SduI	GDGCHC	3 cut(s)	133, 490, 918
SfaNI	GCATC	1 cut(s)	394
Sfr274I	CTCGAG	1 cut(s)	520
SgrDI	CGTCGACG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	175
SlaI	CTCGAG	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	6 cut(s)	342, 412, 537, 544, 583, 722
SsiI	CCGC	3 cut(s)	104, 732, 741
SspMI	CTAG	1 cut(s)	615
SstI	GAGCTC	2 cut(s)	133, 918
StyD4I	CCNGG	2 cut(s)	119, 268
StyI	CCWWGG	2 cut(s)	570, 869
TaaI	ACNGT	3 cut(s)	34, 211, 691
TaqI	TCGA	6 cut(s)	29, 127, 195, 235, 278, 521
TasI	AATT	6 cut(s)	342, 412, 537, 544, 583, 722
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	4 cut(s)	243, 307, 695, 886
TscAI	CASTG	2 cut(s)	164, 790
TseFI	GTSAC	3 cut(s)	493, 626, 781
Tsp45I	GTSAC	3 cut(s)	493, 626, 781
TspDTI	ATGAA	3 cut(s)	405, 725, 878
TspGWI	ACGGA	2 cut(s)	27, 275
TspRI	CASTG	2 cut(s)	164, 790
Van91I	CCANNNNNTGG	2 cut(s)	809, 875
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	722
XcmI	CCANNNNNNNNNTGG	2 cut(s)	543, 568
XhoI	CTCGAG	1 cut(s)	520
XmiI	GTMKAC	1 cut(s)	29
XmnI	GAANNNNTTC	2 cut(s)	46, 113
XspI	CTAG	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.