Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005623

Physical Location & Seq

Genomic Coordinates Reverse (-)

45011289 .. 45017163

Gene Structure 5875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0297200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2139 bp

ATGGCCCAGTCCTCCGCCAAGCACTCTTCAGATTCCGGAAACTGCCGCGACGGCGTCGTTTCGCCCATGAACAAGAACCCCCTCACGTTTCATCTCCAGAAGCTCGGCCTCGAGCTCACTTGCCCTCTCTGCCTAGGGTTTTTTAATCGGCCGACATTGCTTCCGTGCAATCACATCTTCTGCAACAACTGTGTGCCCAATCGGACCAATTTTGGAGCAGAGTGTCCTCTGTGTAATATCCAAGTTCCTGGTCAAGATCTGAGGCATGCGCCTTTCATGGAAAGCATAGTAGCAATCTACAAAAGCATGAAGGCCACTTACTGTACCAACTCATCCCAGCCCATATCTTCAGATGTTAGAACAGCTTTGGGTCAAAACCCTGTTTCACCTGATGTCAGTTTTGCTGGGAAATCGACTCAAGAACAGTTTGACAATTGCCAACAGGGTAAATCAGAAAGTGCTCAGACCATTGTTTCATCAAGGGGTAATAAGCGAGTATGGGTTCCATGTAGTCAGAAACATTCTGTTACAGATGGAATTGGCAAGCATGGCAAAGTAGATAACTGTAGCATAGCAATAGATGGTAACAGCGAAGAATTTGAGTTGGGTAGAGGACGTAAATTTAATGGTGGATTAAATCCCAATTCACCTTTACCAAGTTCTCAAATAAGATCTGTGGGACTGGATGAGTGTATAACTTCAGAAAGAGACATGAATCCAGTAGTGCAGGCGTTGCTGGATAGTCCTCCTTCATTTGGTGATGCCAAATGTTCAGATAATGATAATAGCTTTGACCAGTGCTCTGAGCAAATTTCAGACAGTTTGATCAGGGGGTCAATGAGGAAAATTGATGATAGAACAGGGCAGATGAGGCCTGATAGTTCTGCATCTGATACTGATGGTCATTTGAGGGAACTCAAGAGACAGAAGAAACTGGACTATGGGCCAATCTCAGGGACTAATTCTGAGCTGGAACTTAAATTCAGAACACCTTCTAATGAGTCTTTCACAAATAACACCATTTGTGCATTTTGCCAGTCTTCCACAATCTCAGAGGTCACTGGGCCAATGTTGCACTATTCCAAGGGAAAATTGGTGGAGGGAGATGAAGCATCTGTTTCAGATGTCATACATGTTCACAAAATATGCATTGATTGGGCACCACAAGTGTTCTTTAAAGATGAAACCATTAAAAATTTGAAGGCGGAAGTGACAAGGGGTGCAAGATTAAAATGCACCAAATGTGGGATAAAGGGAGCAGCCTTGGGATGCTTTGTGAAATCCTGCCGAAGAAGCTATCATGTTACCTGTGCAATTGAAATTTCTAAGTGCCGTTGGGATTATGAAAGCTTTCTGCTGCTGTGTCCAGCACATTGTTCAGTTAAATTTCCCAATGAGAAGTTGAATCGTAACAAGCACAAAAATTGTCAGCTCTCCGACAGTAGAGTCGCTTCAAATGGAGTGAACAACTGGGTTTTATGCCCTTCTGGTTTGTCTTCTGAAGAGAAGATTTTTCTTATCAAATTTGCTGAGATGAATGGTGCTACTTTGTCCAAGAGCTGGACACCTGATGTTACACATGTGATTGCTGCCCTGGATGGGGATGGTGCATATGTCCGGACGTTTAAAATTTTCATGGCCATTTTGGCAGGAAAATGGATAGTGACAATTGACTGGGTAAAAGCATGTATGGAAACTAAGCATCATGTGGATGAAGAACCTTATGAAGTTAGTCTTGATAACTATGGGTGTCGCAGTGGTGCCAAAGCTGGCAGGCTTAGGGCATTAAGCAATGATCCGAAGCTCTTTAATGGTTTGAATTTCTATTTTGCTGGTGATTTTATACTGGAACGGAAGGAAGACTACAAAGAATTGGTCATAGCTGCAGGAGGTACTGTTTTCAACAGTAAGGAAGATGTGCTTGAAGCAAGTTGTCATGAAAAGGGAACTTCGAGGACACTAGTTGTGTACAACCTTGACCCCCCACCAGGGTGCAAGTTGGGGGAAGAAGTTTCAATACTTTGGCAAAGGTCTAACGAGGCACAAGATATAGCTGTGAAAATTGGAGCTGAATACGTCTTTCACACATGGTTGTTGGAGTCAATTGCGAGATATGAGTTGCAGCCAATTGTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035670 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044424 GO:0044444 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048519 GO:0048523 GO:0048532 GO:0048545 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1904961 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

BES1_N

Protein Analysis

712

Amino Acids

78.61

Weight (kDa)

6.8

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4	PF00097	41 - 78	2.3e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	41 - 78	2.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-HC5HC2H_2	PF13832	373 - 440	2e-07	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	380 - 458	2.1e-09	PHD-like zinc-binding domain
BRCT	PF00533	494 - 564	1.5e-10	BRCA1 C Terminus (BRCT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G19350 AT1G75080 AT1G75080 AT3G50750
fragaria_vesca	FvH4_2g40170 FvH4_2g40170
malus_domestica	MD08G1035400.v1.1 MD15G1031900.v1.1
prunus_persica	Prupe.1G382900_v2.0.a1
pyrus_communis	pycom15g02760
rosa_chinensis	RchiOBHm_Chr6g0300561
rosa_laevigata	RLG00000011324 RLG00000028760
rosa_multiflora	Rmu_sc0000718.1_g000032 Rmu_sc0002792.1_g000011 Rmu_sc0021182.1_g000002
rosa_roxburghii	Rroxscaffold_7G00167670
rosa_rugosa	Rorug06G0297200
rosa_samantha	Rh3CG341300 Rh6AG409700 Rh6BG417000 Rh6CG424700 Rh6DG410200
rosa_wichuraiana	Rw6G035850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1445
AccB1I	GGYRCC	2 cut(s)	1159, 1760
AccB7I	CCANNNNNTGG	1 cut(s)	1560
AccII	CGCG	1 cut(s)	48
AccIII	TCCGGA	2 cut(s)	35, 1617
AciI	CCGC	3 cut(s)	15, 46, 1205
AclWI	GGATC	1 cut(s)	1790
AcoI	YGGCCR	2 cut(s)	149, 1638
AcuI	CTGAAG	4 cut(s)	12, 333, 684, 1521
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	3 cut(s)	325, 1894, 1970
AfiI	CCNNNNNNNGG	8 cut(s)	755, 953, 1245, 1560, 1599, 1600, 1988, 1989
AflIII	ACRYGT	2 cut(s)	1132, 1579
AgsI	TTSAA	8 cut(s)	1201, 1319, 1405, 1455, 1819, 1903, 1925, 2016
AhlI	ACTAGT	1 cut(s)	1960
AjnI	CCWGG	3 cut(s)	247, 1593, 1987
AleI	CACNNNNGTG	1 cut(s)	1990
Alw21I	GWGCWC	3 cut(s)	117, 463, 803
Alw26I	GTCTC	2 cut(s)	702, 916
AlwI	GGATC	1 cut(s)	1790
Ama87I	CYCGRG	1 cut(s)	110
Aor13HI	TCCGGA	2 cut(s)	35, 1617
AoxI	GGCC	8 cut(s)	3, 106, 149, 312, 872, 944, 1064, 1638
ApeKI	GCWGC	5 cut(s)	1259, 1357, 1589, 1883, 2122
ArsI	GACNNNNNNTTYG	2 cut(s)	1860, 1892
Asp700I	GAANNNNTTC	2 cut(s)	991, 1350
AspA2I	CCTAGG	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	4 cut(s)	4, 204, 944, 1064
AsuHPI	GGTGA	4 cut(s)	378, 639, 770, 1847
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	204
AvrII	CCTAGG	1 cut(s)	133
BaeGI	GKGCMC	2 cut(s)	198, 1162
BalI	TGGCCA	1 cut(s)	1640
BanI	GGYRCC	2 cut(s)	1159, 1760
BanII	GRGCYC	1 cut(s)	117
BarI	GAAGNNNNNNTAC	8 cut(s)	302, 334, 1435, 1467, 1847, 1879, 2001, 2033
BbsI	GAAGAC	3 cut(s)	1032, 1488, 1866
Bbv12I	GWGCWC	3 cut(s)	117, 463, 803
BbvI	GCAGC	5 cut(s)	1271, 1344, 1576, 1870, 2134
BccI	CCATC	5 cut(s)	527, 575, 893, 1592, 1598
BceAI	ACGGC	2 cut(s)	67, 1317
BciT130I	CCWGG	3 cut(s)	249, 1595, 1989
BclI	TGATCA	1 cut(s)	825
BcoDI	GTCTC	2 cut(s)	702, 916
BcuI	ACTAGT	1 cut(s)	1960
BfaI	CTAG	2 cut(s)	134, 1961
BfmI	CTRYAG	2 cut(s)	565, 1884
BglI	GCCNNNNNGGC	2 cut(s)	51, 1646
BglII	AGATCT	2 cut(s)	256, 671
BisI	GCNGC	6 cut(s)	46, 1260, 1358, 1590, 1884, 2123
BlnI	CCTAGG	1 cut(s)	133
BlsI	GCNGC	6 cut(s)	47, 1261, 1359, 1591, 1885, 2124
Bme1390I	CCNGG	3 cut(s)	249, 1595, 1989
Bme18I	GGWCC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	4 cut(s)	4, 204, 944, 1064
BmiI	GGNNCC	3 cut(s)	504, 1161, 1762
BmrFI	CCNGG	3 cut(s)	249, 1595, 1989
BmrI	ACTGGG	3 cut(s)	1071, 1480, 1684
BmsI	GCATC	5 cut(s)	751, 896, 1121, 1259, 1711
BmuI	ACTGGG	3 cut(s)	1071, 1480, 1684
BpiI	GAAGAC	3 cut(s)	1032, 1488, 1866
BpmI	CTGGAG	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	1778
BpuEI	CTTGAG	2 cut(s)	402, 902
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	5 cut(s)	133, 1083, 1263, 1593, 1988
BsaWI	WCCGGW	2 cut(s)	35, 1617
BsaXI	ACNNNNNCTCC	2 cut(s)	1881, 1911
Bsc4I	CCNNNNNNNGG	8 cut(s)	755, 953, 1245, 1560, 1599, 1600, 1988, 1989
Bse3DI	GCAATG	2 cut(s)	155, 1798
BseAI	TCCGGA	2 cut(s)	35, 1617
BseBI	CCWGG	3 cut(s)	249, 1595, 1989
BseDI	CCNNGG	5 cut(s)	133, 1083, 1263, 1593, 1988
BseGI	GGATG	6 cut(s)	332, 691, 1274, 1603, 1609, 1717
BseLI	CCNNNNNNNGG	8 cut(s)	755, 953, 1245, 1560, 1599, 1600, 1988, 1989
BseMI	GCAATG	2 cut(s)	155, 1798
BseMII	CTCAG	7 cut(s)	251, 476, 795, 957, 966, 1065, 1521
BseSI	GKGCMC	2 cut(s)	198, 1162
BseX3I	CGGCCG	1 cut(s)	149
BseXI	GCAGC	5 cut(s)	1271, 1344, 1576, 1870, 2134
BseYI	CCCAGC	2 cut(s)	336, 404
BsgI	GTGCAG	1 cut(s)	746
Bsh1236I	CGCG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	152
BshFI	GGCC	8 cut(s)	5, 108, 151, 314, 874, 946, 1066, 1640
BshNI	GGYRCC	2 cut(s)	1159, 1760
BsiEI	CGRYCG	1 cut(s)	152
BsiHKAI	GWGCWC	3 cut(s)	117, 463, 803
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	36, 1618
BslFI	GGGAC	2 cut(s)	693, 970
BslI	CCNNNNNNNGG	8 cut(s)	755, 953, 1245, 1560, 1599, 1600, 1988, 1989
BsmAI	GTCTC	2 cut(s)	702, 916
BsmFI	GGGAC	2 cut(s)	693, 970
BsnI	GGCC	8 cut(s)	5, 108, 151, 314, 874, 946, 1066, 1640
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	5 cut(s)	117, 198, 463, 803, 1162
Bsp13I	TCCGGA	2 cut(s)	35, 1617
Bsp1407I	TGTACA	1 cut(s)	1968
Bsp143I	GATC	4 cut(s)	256, 671, 825, 1795
BspACI	CCGC	3 cut(s)	15, 46, 1205
BspANI	GGCC	8 cut(s)	5, 108, 151, 314, 874, 946, 1066, 1640
BspCNI	CTCAG	7 cut(s)	252, 475, 796, 958, 965, 1064, 1522
BspEI	TCCGGA	2 cut(s)	35, 1617
BspFNI	CGCG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	1936
BspLI	GGNNCC	3 cut(s)	504, 1161, 1762
BspMAI	CTGCAG	1 cut(s)	1888
BspPI	GGATC	1 cut(s)	1790
BspT107I	GGYRCC	2 cut(s)	1159, 1760
BsrDI	GCAATG	2 cut(s)	155, 1798
BsrGI	TGTACA	1 cut(s)	1968
BssECI	CCNNGG	5 cut(s)	133, 1083, 1263, 1593, 1988
BssMI	GATC	4 cut(s)	256, 671, 825, 1795
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	3 cut(s)	133, 1083, 1263
Bst2UI	CCWGG	3 cut(s)	249, 1595, 1989
Bst4CI	ACNGT	8 cut(s)	191, 323, 426, 566, 821, 1442, 1897, 1907
Bst6I	CTCTTC	2 cut(s)	31, 1497
BstACI	GRCGYC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	733
BstAUI	TGTACA	1 cut(s)	1968
BstC8I	GCNNGC	5 cut(s)	267, 545, 729, 1771, 1775
BstF5I	GGATG	6 cut(s)	332, 691, 1274, 1603, 1609, 1717
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	4 cut(s)	259, 674, 828, 1798
BstMAI	GTCTC	2 cut(s)	702, 916
BstMBI	GATC	4 cut(s)	256, 671, 825, 1795
BstMCI	CGRYCG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	9 cut(s)	51, 129, 157, 549, 733, 871, 1072, 1293, 1646
BstNI	CCWGG	3 cut(s)	249, 1595, 1989
BstNSI	RCATGY	4 cut(s)	269, 1136, 1583, 1689
BstSCI	CCNGG	3 cut(s)	247, 1593, 1987
BstSFI	CTRYAG	2 cut(s)	565, 1884
BstSLI	GKGCMC	2 cut(s)	198, 1162
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	5 cut(s)	1271, 1344, 1576, 1870, 2134
BstV2I	GAAGAC	3 cut(s)	1032, 1488, 1866
BstX2I	RGATCY	2 cut(s)	256, 671
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	2 cut(s)	256, 671
BstZI	CGGCCG	1 cut(s)	149
BsuRI	GGCC	8 cut(s)	5, 108, 151, 314, 874, 946, 1066, 1640
BtsCI	GGATG	6 cut(s)	332, 691, 1274, 1603, 1609, 1717
BtsI	GCAGTG	1 cut(s)	1762
BtsIMutI	CAGTG	3 cut(s)	803, 1059, 1762
Cac8I	GCNNGC	5 cut(s)	267, 545, 729, 1771, 1775
CciI	TCATGA	1 cut(s)	1936
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	4 cut(s)	4, 204, 944, 1064
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	3 cut(s)	324, 1893, 1969
CviQI	GTAC	3 cut(s)	324, 1893, 1969
DpnI	GATC	4 cut(s)	258, 673, 827, 1797
DpnII	GATC	4 cut(s)	256, 671, 825, 1795
DraI	TTTAAA	2 cut(s)	1177, 1627
DrdI	GACNNNNNNGTC	1 cut(s)	1445
DseDI	GACNNNNNNGTC	1 cut(s)	1445
EaeI	YGGCCR	2 cut(s)	149, 1638
EagI	CGGCCG	1 cut(s)	149
Eam1104I	CTCTTC	2 cut(s)	31, 1497
EarI	CTCTTC	2 cut(s)	31, 1497
EciI	GGCGGA	2 cut(s)	4, 1220
Ecl136II	GAGCTC	1 cut(s)	115
EclXI	CGGCCG	1 cut(s)	149
Eco130I	CCWWGG	3 cut(s)	133, 1083, 1263
Eco147I	AGGCCT	1 cut(s)	874
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	204
Eco52I	CGGCCG	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	4 cut(s)	12, 333, 684, 1521
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	115
EcoRII	CCWGG	3 cut(s)	247, 1593, 1987
EcoT14I	CCWWGG	3 cut(s)	133, 1083, 1263
EcoT22I	ATGCAT	1 cut(s)	1151
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	3 cut(s)	133, 1083, 1263
FalI	AAGNNNNNCTT	4 cut(s)	1719, 1751, 1905, 1937
FaqI	GGGAC	2 cut(s)	693, 970
FauNDI	CATATG	1 cut(s)	1612
FbaI	TGATCA	1 cut(s)	825
Fnu4HI	GCNGC	6 cut(s)	46, 1260, 1358, 1590, 1884, 2123
FokI	GGATG	6 cut(s)	319, 698, 1281, 1610, 1616, 1724
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	6 cut(s)	46, 1260, 1358, 1590, 1884, 2123
FspBI	CTAG	2 cut(s)	134, 1961
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	6 cut(s)	46, 1260, 1358, 1590, 1884, 2123
GsaI	CCCAGC	2 cut(s)	340, 408
GsuI	CTGGAG	1 cut(s)	80
HaeIII	GGCC	8 cut(s)	5, 108, 151, 314, 874, 946, 1066, 1640
HapII	CCGG	2 cut(s)	36, 1618
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	1348
HinfI	GANTC	7 cut(s)	32, 415, 715, 1001, 1405, 1446, 2099
HpaII	CCGG	2 cut(s)	36, 1618
HphI	GGTGA	4 cut(s)	378, 639, 770, 1847
Hpy166II	GTNNAC	3 cut(s)	1138, 1465, 1969
Hpy188III	TCNNGA	8 cut(s)	36, 97, 254, 419, 919, 1618, 1736, 1937
Hpy8I	GTNNAC	3 cut(s)	1138, 1465, 1969
Hpy99I	CGWCG	2 cut(s)	53, 59
HpyAV	CCTTC	6 cut(s)	304, 759, 1002, 1195, 1494, 1849
HpyCH4III	ACNGT	8 cut(s)	191, 323, 426, 566, 821, 1442, 1897, 1907
HpyCH4IV	ACGT	4 cut(s)	86, 616, 1622, 2076
HpyF10VI	GCNNNNNNNGC	9 cut(s)	51, 129, 157, 549, 733, 871, 1072, 1293, 1646
HpySE526I	ACGT	4 cut(s)	86, 616, 1622, 2076
Hsp92I	GRCGYC	1 cut(s)	54
HspAI	GCGC	1 cut(s)	269
Kpn2I	TCCGGA	2 cut(s)	35, 1617
Ksp22I	TGATCA	1 cut(s)	825
Kzo9I	GATC	4 cut(s)	256, 671, 825, 1795
LmnI	GCTCC	3 cut(s)	215, 1256, 2066
Lsp1109I	GCAGC	5 cut(s)	1271, 1344, 1576, 1870, 2134
LweI	GCATC	5 cut(s)	751, 896, 1121, 1259, 1711
MaeI	CTAG	2 cut(s)	134, 1961
MaeII	ACGT	4 cut(s)	86, 616, 1622, 2076
MaeIII	GTNAC	8 cut(s)	526, 584, 1057, 1210, 1303, 1409, 1573, 1663
MalI	GATC	4 cut(s)	258, 673, 827, 1797
MboI	GATC	4 cut(s)	256, 671, 825, 1795
MfeI	CAATTG	5 cut(s)	433, 1314, 1668, 2103, 2127
MflI	RGATCY	2 cut(s)	256, 671
MhlI	GDGCHC	5 cut(s)	117, 198, 463, 803, 1162
MlsI	TGGCCA	1 cut(s)	1640
MluNI	TGGCCA	1 cut(s)	1640
MlyI	GAGTC	4 cut(s)	409, 1010, 1455, 2108
MmeI	TCCRAC	2 cut(s)	1461, 2076
Mox20I	TGGCCA	1 cut(s)	1640
Mph1103I	ATGCAT	1 cut(s)	1151
MroI	TCCGGA	2 cut(s)	35, 1617
MroXI	GAANNNNTTC	2 cut(s)	991, 1350
MscI	TGGCCA	1 cut(s)	1640
MslI	CAYNNNNRTG	2 cut(s)	1710, 1990
Msp20I	TGGCCA	1 cut(s)	1640
MspI	CCGG	2 cut(s)	36, 1618
MspR9I	CCNGG	3 cut(s)	249, 1595, 1989
MunI	CAATTG	5 cut(s)	433, 1314, 1668, 2103, 2127
MvaI	CCWGG	3 cut(s)	249, 1595, 1989
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	9 cut(s)	51, 129, 157, 549, 733, 871, 1072, 1293, 1646
NdeI	CATATG	1 cut(s)	1612
NdeII	GATC	4 cut(s)	256, 671, 825, 1795
NlaIV	GGNNCC	3 cut(s)	504, 1161, 1762
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	3 cut(s)	1057, 1210, 1663
NsiI	ATGCAT	1 cut(s)	1151
NspI	RCATGY	4 cut(s)	269, 1136, 1583, 1689
OliI	CACNNNNGTG	1 cut(s)	1990
PaeI	GCATGC	1 cut(s)	269
PaeR7I	CTCGAG	1 cut(s)	110
PagI	TCATGA	1 cut(s)	1936
PceI	AGGCCT	1 cut(s)	874
PciI	ACATGT	2 cut(s)	1132, 1579
PdmI	GAANNNNTTC	2 cut(s)	991, 1350
PfeI	GAWTC	3 cut(s)	32, 715, 1405
PflFI	GACNNNGTC	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	1560
PkrI	GCNGC	6 cut(s)	47, 1261, 1359, 1591, 1885, 2124
PleI	GAGTC	4 cut(s)	409, 1009, 1454, 2107
PpsI	GAGTC	4 cut(s)	409, 1009, 1454, 2107
PscI	ACATGT	2 cut(s)	1132, 1579
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	3 cut(s)	247, 1593, 1987
PspFI	CCCAGC	2 cut(s)	336, 404
PspGI	CCWGG	3 cut(s)	247, 1593, 1987
PspN4I	GGNNCC	3 cut(s)	504, 1161, 1762
PspPI	GGNCC	4 cut(s)	4, 204, 944, 1064
PspXI	VCTCGAGB	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	1888
PsuI	RGATCY	2 cut(s)	256, 671
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	3 cut(s)	325, 1894, 1970
RsaNI	GTAC	3 cut(s)	324, 1893, 1969
RseI	CAYNNNNRTG	2 cut(s)	1710, 1990
SacI	GAGCTC	1 cut(s)	117
SatI	GCNGC	6 cut(s)	46, 1260, 1358, 1590, 1884, 2123
Sau3AI	GATC	4 cut(s)	256, 671, 825, 1795
Sau96I	GGNCC	4 cut(s)	4, 204, 944, 1064
SchI	GAGTC	4 cut(s)	409, 1010, 1455, 2108
ScrFI	CCNGG	3 cut(s)	249, 1595, 1989
SduI	GDGCHC	5 cut(s)	117, 198, 463, 803, 1162
SfaNI	GCATC	5 cut(s)	751, 896, 1121, 1259, 1711
SfcI	CTRYAG	2 cut(s)	565, 1884
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	1710, 1990
SmlI	CTYRAG	3 cut(s)	110, 417, 917
SmoI	CTYRAG	3 cut(s)	110, 417, 917
SpeI	ACTAGT	1 cut(s)	1960
SphI	GCATGC	1 cut(s)	269
SseBI	AGGCCT	1 cut(s)	874
SsiI	CCGC	3 cut(s)	15, 46, 1205
SspMI	CTAG	2 cut(s)	134, 1961
SstI	GAGCTC	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	874
StyD4I	CCNGG	3 cut(s)	247, 1593, 1987
StyI	CCWWGG	3 cut(s)	133, 1083, 1263
TaaI	ACNGT	8 cut(s)	191, 323, 426, 566, 821, 1442, 1897, 1907
TaiI	ACGT	4 cut(s)	89, 619, 1625, 2079
TaqI	TCGA	3 cut(s)	111, 413, 1952
TatI	WGTACW	1 cut(s)	1968
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	3 cut(s)	32, 715, 1405
TscAI	CASTG	3 cut(s)	803, 1066, 1762
TseFI	GTSAC	3 cut(s)	1057, 1210, 1663
TseI	GCWGC	5 cut(s)	1259, 1357, 1589, 1883, 2122
Tsp45I	GTSAC	3 cut(s)	1057, 1210, 1663
TspGWI	ACGGA	2 cut(s)	153, 1867
TspRI	CASTG	3 cut(s)	803, 1066, 1762
Tth111I	GACNNNGTC	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	1560
VpaK11BI	GGWCC	1 cut(s)	204
XceI	RCATGY	4 cut(s)	269, 1136, 1583, 1689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1090
XhoI	CTCGAG	1 cut(s)	110
XmaJI	CCTAGG	1 cut(s)	133
XmnI	GAANNNNTTC	2 cut(s)	991, 1350
XspI	CTAG	2 cut(s)	134, 1961
Zsp2I	ATGCAT	1 cut(s)	1151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.