Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008745

Physical Location & Seq

Genomic Coordinates Reverse (-)

6891382 .. 6894752

Gene Structure 3371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGAGGGCATTGCACAAAAGGGTATCGTGGCCACCAGATTTTAAACTTTGTCAGGTACGGCTATTCATATCAGAGGATTCACCTTCACAAGTTGGATCAGAGTCTCAAGATCACCTGCAAGCAAAGTCACCATTGGCTTCACATCCAAGTGATGATAATCTGCCACCTGGTTTTGGTGGACCCTTTTCTGCGAATGAGTCCCAGATTAAGTTATCAGATATCCCACTAATAAAGTGGAAATGCTCCGTCCAGATTCTGCTAGATCGGGAATGGAAAGTGGTTGCAGGGGACGAAAGCAAAGAAGTGGAGGCCCAAAATGAGAGGGAATTGAGAGTTCTTGAAGCATTTTATCCTGGCGCATCATCTATTCCTCCAAACCCTTCGGTTCCAGCTGATGTTGAGGACTCACATCATGATGATCAGCAAACCATTGTCATACCCATCCTACCTGTAGAAGATGATGACATAGCGATGGATTCAGCATCTGATTTCCCAACCCAATCTGGCGTGGATGTGGGAACAGAGCCATCAATAACCGATGAGAACACATCAACTTCTTCAACCCTCCCTGCAGGGCCAGATATAATGGCTGCGTTATCTGCAATCTCAAACAGCAAAGAACAAGGCAGTATGATCGACCAAGATCTGCTTATTAAAATCCTAAGCAACCCTAAGTTGGTCGAGAATCTTGTTGCAAATCGTGGCAGTGCAGGTTCAGTCTCCTCCAACACAAGTAGCCTCTACTCATCTTCAACACATGAAGCCAACGGAGTAGTAACCACGGCACCTATTTCCTCAAATGGACAATTTTACGCTCAGCCACCCATAACTCATATTCCTCCCATGGCGTATACTCCTCACGCTCCTCAAGACCAACCGAACTATGGAGCACCGCCAGCAAGAGATGCTAGTTATTACAAGAACCTGATTCAGCAACATGGCGGGGATAGACAAGAGACGCCGCCAGTTCAACATCTCGGTTATCGATACAACCTCCAACCTGGAGGAGGACCTAACCCGGAGATGGTAAATAGCAGTAATAATAACCAGAGGCCAAGGGATTCAAAACCCAAGATAATGAAGGCTTGCATGTACTTCAACAGCGCAAGGGGTTGTCGCCATGGAGCTAATTGTATGTACCAGCACGATGCTACACCCTACCAGCCGAGGAATCTAAACAATGGTAATATCAACACTTCTGATATGCAGAATGCAAAAAGAATGAGATTTGACAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

413

Amino Acids

45.13

Weight (kDa)

5.22

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19860 AT1G19860
fragaria_vesca	FvH4_2g38810 FvH4_2g38810 FvH4_2g38810 FvH4_2g38810
malus_domestica	MD08G1015700.v1.1 MD15G1014600.v1.1
prunus_persica	Prupe.1G368900_v2.0.a1
pyrus_communis	pycom08g01370 pycom15g01270
rosa_chinensis	RchiOBHm_Chr6g0302461
rosa_laevigata	RLG00000011169
rosa_multiflora	Rmu_co8159708.1_g000001 Rmu_co8376349.1_g000001 Rmu_sc0011021.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165750
rosa_rugosa	Rorug06G0314400
rosa_samantha	Rh6AG427500 Rh6BG475200 Rh6CG439600 Rh6DG426600
rosa_wichuraiana	Rw6G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	123
Acc36I	ACCTGC	2 cut(s)	123, 701
AccB1I	GGYRCC	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	851
AciI	CCGC	3 cut(s)	893, 942, 962
AclWI	GGATC	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	959
AfaI	GTAC	3 cut(s)	57, 1094, 1139
AfiI	CCNNNNNNNGG	5 cut(s)	173, 676, 884, 1007, 1024
AgsI	TTSAA	6 cut(s)	341, 561, 753, 971, 1065, 1099
AjnI	CCWGG	3 cut(s)	166, 352, 1000
AluBI	AGCT	2 cut(s)	392, 1127
AluI	AGCT	2 cut(s)	392, 1127
Alw21I	GWGCWC	1 cut(s)	892
Alw26I	GTCTC	4 cut(s)	108, 724, 950, 1230
AlwI	GGATC	1 cut(s)	103
AlwNI	CAGNNNCTG	3 cut(s)	256, 485, 1239
AoxI	GGCC	4 cut(s)	29, 309, 575, 1052
ApeKI	GCWGC	1 cut(s)	590
AspLEI	GCGC	2 cut(s)	359, 1106
AspS9I	GGNCC	4 cut(s)	179, 310, 575, 1010
AsuC2I	CCSGG	1 cut(s)	1019
AsuHPI	GGTGA	3 cut(s)	72, 104, 120
AvaII	GGWCC	2 cut(s)	179, 1010
BalI	TGGCCA	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	784
Bbv12I	GWGCWC	1 cut(s)	892
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	4 cut(s)	449, 466, 535, 1018
BceAI	ACGGC	2 cut(s)	74, 798
BcgI	CGANNNNNNTGC	2 cut(s)	616, 650
BciT130I	CCWGG	3 cut(s)	168, 354, 1002
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	1019
BcoDI	GTCTC	4 cut(s)	108, 724, 950, 1230
BfaI	CTAG	2 cut(s)	260, 909
BfmI	CTRYAG	2 cut(s)	450, 570
BfuAI	ACCTGC	2 cut(s)	123, 701
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	2 cut(s)	591, 962
BlpI	GCTNAGC	1 cut(s)	816
BlsI	GCNGC	2 cut(s)	592, 963
Bme1390I	CCNGG	4 cut(s)	168, 354, 1002, 1019
Bme18I	GGWCC	2 cut(s)	179, 1010
BmgT120I	GGNCC	4 cut(s)	179, 310, 575, 1010
BmiI	GGNNCC	3 cut(s)	181, 387, 786
BmrFI	CCNGG	4 cut(s)	168, 354, 1002, 1019
BmsI	GCATC	4 cut(s)	368, 491, 895, 1138
BpmI	CTGGAG	1 cut(s)	1023
Bpu10I	CCTNAGC	1 cut(s)	662
Bpu1102I	GCTNAGC	1 cut(s)	816
BpuEI	CTTGAG	2 cut(s)	90, 852
BpuMI	CCSGG	1 cut(s)	1019
Bsa29I	ATCGAT	1 cut(s)	985
BsaBI	GATNNNNATC	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	959
BsaJI	CCNNGG	5 cut(s)	780, 843, 1055, 1120, 1166
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 676, 884, 1007, 1024
Bse1I	ACTGG	1 cut(s)	965
Bse3DI	GCAATG	1 cut(s)	8
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	3 cut(s)	168, 354, 1002
BseCI	ATCGAT	1 cut(s)	985
BseDI	CCNNGG	5 cut(s)	780, 843, 1055, 1120, 1166
BseGI	GGATG	3 cut(s)	142, 441, 517
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	5 cut(s)	173, 676, 884, 1007, 1024
BseMI	GCAATG	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	830
BseNI	ACTGG	1 cut(s)	965
BseRI	GAGGAG	4 cut(s)	712, 846, 855, 1020
BseXI	GCAGC	1 cut(s)	577
BsgI	GTGCAG	1 cut(s)	729
BshFI	GGCC	4 cut(s)	31, 311, 577, 1054
BshNI	GGYRCC	1 cut(s)	784
BshVI	ATCGAT	1 cut(s)	985
BsiHKAI	GWGCWC	1 cut(s)	892
BsiSI	CCGG	1 cut(s)	1019
BslFI	GGGAC	2 cut(s)	184, 302
BslI	CCNNNNNNNGG	5 cut(s)	173, 676, 884, 1007, 1024
BsmAI	GTCTC	4 cut(s)	108, 724, 950, 1230
BsmBI	CGTCTC	1 cut(s)	950
BsmFI	GGGAC	2 cut(s)	184, 302
BsmI	GAATGC	1 cut(s)	1216
BsnI	GGCC	4 cut(s)	31, 311, 577, 1054
Bsp1286I	GDGCHC	1 cut(s)	892
Bsp143I	GATC	6 cut(s)	95, 109, 262, 418, 633, 643
Bsp1720I	GCTNAGC	1 cut(s)	816
Bsp19I	CCATGG	2 cut(s)	843, 1120
BspACI	CCGC	3 cut(s)	893, 942, 962
BspANI	GGCC	4 cut(s)	31, 311, 577, 1054
BspCNI	CTCAG	1 cut(s)	829
BspDI	ATCGAT	1 cut(s)	985
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	3 cut(s)	181, 387, 786
BspMAI	CTGCAG	1 cut(s)	574
BspMI	ACCTGC	2 cut(s)	123, 701
BspPI	GGATC	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	784
BsrDI	GCAATG	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	965
BssECI	CCNNGG	5 cut(s)	780, 843, 1055, 1120, 1166
BssMI	GATC	6 cut(s)	95, 109, 262, 418, 633, 643
BssNAI	GTATAC	1 cut(s)	852
BssNI	GRCGYC	1 cut(s)	959
BssT1I	CCWWGG	3 cut(s)	843, 1055, 1120
Bst1107I	GTATAC	1 cut(s)	852
Bst2UI	CCWGG	3 cut(s)	168, 354, 1002
BstACI	GRCGYC	1 cut(s)	959
BstAPI	GCANNNNNTGC	1 cut(s)	905
BstC8I	GCNNGC	3 cut(s)	120, 897, 1087
BstDEI	CTNAG	3 cut(s)	662, 672, 816
BstDSI	CCRYGG	3 cut(s)	780, 843, 1120
BstENI	CCTNNNNNAGG	1 cut(s)	1005
BstF5I	GGATG	3 cut(s)	142, 441, 517
BstHHI	GCGC	2 cut(s)	359, 1106
BstKTI	GATC	6 cut(s)	98, 112, 265, 421, 636, 646
BstMAI	GTCTC	4 cut(s)	108, 724, 950, 1230
BstMBI	GATC	6 cut(s)	95, 109, 262, 418, 633, 643
BstMWI	GCNNNNNNNGC	3 cut(s)	599, 896, 905
BstNI	CCWGG	3 cut(s)	168, 354, 1002
BstNSI	RCATGY	1 cut(s)	1093
BstSCI	CCNGG	4 cut(s)	166, 352, 1000, 1017
BstSFI	CTRYAG	2 cut(s)	450, 570
BstV1I	GCAGC	1 cut(s)	577
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BstZ17I	GTATAC	1 cut(s)	852
Bsu15I	ATCGAT	1 cut(s)	985
BsuRI	GGCC	4 cut(s)	31, 311, 577, 1054
BsuTUI	ATCGAT	1 cut(s)	985
BtgI	CCRYGG	3 cut(s)	780, 843, 1120
BtgZI	GCGATG	1 cut(s)	485
BtsCI	GGATG	3 cut(s)	142, 441, 517
BtsI	GCAGTG	1 cut(s)	712
BtsIMutI	CAGTG	1 cut(s)	712
BveI	ACCTGC	2 cut(s)	123, 701
Cac8I	GCNNGC	3 cut(s)	120, 897, 1087
CaiI	CAGNNNCTG	3 cut(s)	256, 485, 1239
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	2 cut(s)	359, 1106
Cfr13I	GGNCC	4 cut(s)	179, 310, 575, 1010
ClaI	ATCGAT	1 cut(s)	985
CseI	GACGC	1 cut(s)	967
CsiI	ACCWGGT	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	56, 1093, 1138
CviAII	CATG	6 cut(s)	413, 758, 844, 938, 1090, 1121
CviQI	GTAC	3 cut(s)	56, 1093, 1138
DdeI	CTNAG	3 cut(s)	662, 672, 816
DpnI	GATC	6 cut(s)	97, 111, 264, 420, 635, 645
DpnII	GATC	6 cut(s)	95, 109, 262, 418, 633, 643
DraI	TTTAAA	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	29
Eco130I	CCWWGG	3 cut(s)	843, 1055, 1120
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	179, 1010
EcoNI	CCTNNNNNAGG	1 cut(s)	1005
EcoO109I	RGGNCCY	1 cut(s)	1010
EcoRII	CCWGG	3 cut(s)	166, 352, 1000
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	3 cut(s)	843, 1055, 1120
ErhI	CCWWGG	3 cut(s)	843, 1055, 1120
Esp3I	CGTCTC	1 cut(s)	950
FaeI	CATG	6 cut(s)	416, 761, 847, 941, 1093, 1124
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FaqI	GGGAC	2 cut(s)	184, 302
FatI	CATG	6 cut(s)	412, 757, 843, 937, 1089, 1120
FauI	CCCGC	1 cut(s)	935
FbaI	TGATCA	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	851
Fnu4HI	GCNGC	2 cut(s)	591, 962
FokI	GGATG	3 cut(s)	129, 428, 524
Fsp4HI	GCNGC	2 cut(s)	591, 962
FspBI	CTAG	2 cut(s)	260, 909
GlaI	GCGC	2 cut(s)	358, 1105
GluI	GCNGC	2 cut(s)	591, 962
GsuI	CTGGAG	1 cut(s)	1023
HaeIII	GGCC	4 cut(s)	31, 311, 577, 1054
HapII	CCGG	1 cut(s)	1019
HgaI	GACGC	1 cut(s)	967
HhaI	GCGC	2 cut(s)	359, 1106
Hin1I	GRCGYC	1 cut(s)	959
Hin1II	CATG	6 cut(s)	416, 761, 847, 941, 1093, 1124
Hin6I	GCGC	2 cut(s)	357, 1104
HinP1I	GCGC	2 cut(s)	357, 1104
HpaII	CCGG	1 cut(s)	1019
HphI	GGTGA	3 cut(s)	72, 104, 120
Hpy166II	GTNNAC	2 cut(s)	179, 852
Hpy188I	TCNGA	5 cut(s)	73, 100, 217, 487, 1201
Hpy188III	TCNNGA	7 cut(s)	107, 250, 266, 338, 413, 682, 869
Hpy8I	GTNNAC	2 cut(s)	179, 852
HpyAV	CCTTC	3 cut(s)	93, 390, 1075
HpyF10VI	GCNNNNNNNGC	3 cut(s)	599, 896, 905
HpyF3I	CTNAG	3 cut(s)	662, 672, 816
Hsp92I	GRCGYC	1 cut(s)	959
Hsp92II	CATG	6 cut(s)	416, 761, 847, 941, 1093, 1124
HspAI	GCGC	2 cut(s)	357, 1104
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	6 cut(s)	95, 109, 262, 418, 633, 643
LmnI	GCTCC	4 cut(s)	248, 868, 887, 1124
Lsp1109I	GCAGC	1 cut(s)	577
LweI	GCATC	4 cut(s)	368, 491, 895, 1138
MabI	ACCWGGT	1 cut(s)	166
MaeI	CTAG	2 cut(s)	260, 909
MaeIII	GTNAC	2 cut(s)	126, 775
MalI	GATC	6 cut(s)	97, 111, 264, 420, 635, 645
MboI	GATC	6 cut(s)	95, 109, 262, 418, 633, 643
MboII	GAAGA	3 cut(s)	467, 549, 741
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	892
MlsI	TGGCCA	1 cut(s)	31
MluCI	AATT	3 cut(s)	326, 806, 1129
MluNI	TGGCCA	1 cut(s)	31
MlyI	GAGTC	3 cut(s)	110, 206, 398
MmeI	TCCRAC	3 cut(s)	73, 750, 1021
Mox20I	TGGCCA	1 cut(s)	31
MscI	TGGCCA	1 cut(s)	31
MseI	TTAA	3 cut(s)	42, 207, 654
MslI	CAYNNNNRTG	3 cut(s)	147, 414, 470
Msp20I	TGGCCA	1 cut(s)	31
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	1 cut(s)	1019
MspR9I	CCNGG	4 cut(s)	168, 354, 1002, 1019
Mva1269I	GAATGC	1 cut(s)	1216
MvaI	CCWGG	3 cut(s)	168, 354, 1002
MwoI	GCNNNNNNNGC	3 cut(s)	599, 896, 905
NciI	CCSGG	1 cut(s)	1019
NcoI	CCATGG	2 cut(s)	843, 1120
NdeII	GATC	6 cut(s)	95, 109, 262, 418, 633, 643
NlaIII	CATG	6 cut(s)	416, 761, 847, 941, 1093, 1124
NlaIV	GGNNCC	3 cut(s)	181, 387, 786
NmeAIII	GCCGAG	1 cut(s)	1191
NmuCI	GTSAC	1 cut(s)	126
NspI	RCATGY	1 cut(s)	1093
PagI	TCATGA	1 cut(s)	412
PaqCI	CACCTGC	1 cut(s)	123
PctI	GAATGC	1 cut(s)	1216
PfeI	GAWTC	7 cut(s)	77, 253, 476, 685, 928, 1061, 1171
PkrI	GCNGC	2 cut(s)	592, 963
PleI	GAGTC	3 cut(s)	109, 205, 398
PpsI	GAGTC	3 cut(s)	109, 205, 398
PpuMI	RGGWCCY	1 cut(s)	1010
Psp5II	RGGWCCY	1 cut(s)	1010
Psp6I	CCWGG	3 cut(s)	166, 352, 1000
PspGI	CCWGG	3 cut(s)	166, 352, 1000
PspN4I	GGNNCC	3 cut(s)	181, 387, 786
PspPI	GGNCC	4 cut(s)	179, 310, 575, 1010
PspPPI	RGGWCCY	1 cut(s)	1010
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	3 cut(s)	256, 485, 1239
PsuI	RGATCY	1 cut(s)	643
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	3 cut(s)	57, 1094, 1139
RsaNI	GTAC	3 cut(s)	56, 1093, 1138
RseI	CAYNNNNRTG	3 cut(s)	147, 414, 470
SaqAI	TTAA	3 cut(s)	42, 207, 654
SatI	GCNGC	2 cut(s)	591, 962
Sau3AI	GATC	6 cut(s)	95, 109, 262, 418, 633, 643
Sau96I	GGNCC	4 cut(s)	179, 310, 575, 1010
SbfI	CCTGCAGG	1 cut(s)	574
SchI	GAGTC	3 cut(s)	110, 206, 398
ScrFI	CCNGG	4 cut(s)	168, 354, 1002, 1019
SdaI	CCTGCAGG	1 cut(s)	574
SduI	GDGCHC	1 cut(s)	892
SexAI	ACCWGGT	1 cut(s)	166
SfaNI	GCATC	4 cut(s)	368, 491, 895, 1138
SfcI	CTRYAG	2 cut(s)	450, 570
SinI	GGWCC	2 cut(s)	179, 1010
SmiMI	CAYNNNNRTG	3 cut(s)	147, 414, 470
SmlI	CTYRAG	2 cut(s)	105, 867
SmoI	CTYRAG	2 cut(s)	105, 867
Sse8387I	CCTGCAGG	1 cut(s)	574
Sse9I	AATT	3 cut(s)	326, 806, 1129
SsiI	CCGC	3 cut(s)	893, 942, 962
SspMI	CTAG	2 cut(s)	260, 909
StyD4I	CCNGG	4 cut(s)	166, 352, 1000, 1017
StyI	CCWWGG	3 cut(s)	843, 1055, 1120
TaqI	TCGA	3 cut(s)	636, 681, 985
TasI	AATT	3 cut(s)	326, 806, 1129
TatI	WGTACW	1 cut(s)	1092
TauI	GCSGC	1 cut(s)	964
TfiI	GAWTC	7 cut(s)	77, 253, 476, 685, 928, 1061, 1171
Tru1I	TTAA	3 cut(s)	42, 207, 654
Tru9I	TTAA	3 cut(s)	42, 207, 654
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	1 cut(s)	126
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	3 cut(s)	55, 774, 1094
TspGWI	ACGGA	2 cut(s)	235, 783
TspRI	CASTG	1 cut(s)	712
VpaK11BI	GGWCC	2 cut(s)	179, 1010
XagI	CCTNNNNNAGG	1 cut(s)	1005
XceI	RCATGY	1 cut(s)	1093
XcmI	CCANNNNNNNNNTGG	2 cut(s)	231, 881
XmiI	GTMKAC	1 cut(s)	851
XspI	CTAG	2 cut(s)	260, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.