Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008745

Physical Location & Seq

Genomic Coordinates Reverse (-)

28006921 .. 28011844

Gene Structure 4924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGCAGGTTAAGTTGTTTCTGTTGGAAGAATCTCCATCACAAGTTGGGTTGAGTGCTCAAGATCACCTCCAGGCAAAGACATCATGGTTGTCACATTCATCTGGAACAGGCTCTGATGACAATCTGCCCCCTGGTTTTGAGAGTGCTCATCCATCAAATCAGCTACAGATTGACTTGTCTCAAATTCCTCTAATTAGATGGAAAACCCCTCCAAGGGTTGTACTGAACTTTGCTTGGCAAGTTGTTGCTGGGGAAGAAAGCAAAGAGGTGGAGAGTGAAAATCAGAGAGAGTTACGAGTACTGGAAGCAGTTTATCCACGACCGTCTGCTATTCCTCCCAACCCCTTTATAGATGTGGAGGAGTCTAGTCACAATGATGTACAACCTCTTTCGATACCTATTACTCCTATTGAGGAGGAAGATGTAGCAATTGCTACATCATCTGAATTGATGGTGCCATTTAAGATTCCCACAAGTTCACCATCCTTCCTATCAATGCATGGAACTCCTGCCCAATCTCAAAGCAATGCAGCTAGTAATAGGGATCTCATGGCCTCTAACAAGCCAACAGCTGGGACCCCTATAGGGTTAGAACCGAATGTCGTAGCTGCTGCCCTTGGTGCAATCATGAATGGCAACAATGAGCAAGGAAACATTGACCATGAATTGCTGATTAAGATTCTGAGCAACCCAAAGATGATTGAGAAATTAGTTACAGATCCACAGGCAGTGACTAGATCACCATCCATGAGTTCATCAGATCCAATCCCTCTTCACATCAATAACGCAGAAAGTATCACACCTTTGTCAACCGCTCCATCAAGTGGACATTTTTATCCTCAAGCAAATATGGGTGGAATGGGACATCTTTCTGATCCATCTTTGTTATCAACTGTTCCAGTTTCTTCCTCACCAGCTGTTGGACCACCAGCAAAGGATATCAACTATTATAAAAGCTTGATTCAACAACATGGAGGGGATAGACATGACTCCTTTCCACCATTCAGCAATCATCGTAGTCACCCAGGAAACCAAGAATCCTTTAATGGTTACAAATCAAGAGATCCAAAGCCTAAGATTATGAAGCCTTGCATATATTTCAATAGTTCGAGGGGATGCCGCCATGGAGCAAACTGTTCATTCCAACATGATGCGTCTTTTCAACAGCAGGGTAGTCGTGTCCCTGAGGTGCAGAGTAGTAAGAGAATGAAATTCGATAGGGAGATAAGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

412

Amino Acids

44.69

Weight (kDa)

5.83

Isoelectric Point (pI)

61.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19860 AT1G19860
fragaria_vesca	FvH4_2g38810 FvH4_2g38810 FvH4_2g38810 FvH4_2g38810
malus_domestica	MD08G1015700.v1.1 MD15G1014600.v1.1
prunus_persica	Prupe.1G368900_v2.0.a1
pyrus_communis	pycom08g01370 pycom15g01270
rosa_chinensis	RchiOBHm_Chr6g0302461
rosa_laevigata	RLG00000011169
rosa_multiflora	Rmu_co8159708.1_g000001 Rmu_co8376349.1_g000001 Rmu_sc0011021.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165750
rosa_rugosa	Rorug06G0314400
rosa_samantha	Rh6AG427500 Rh6BG475200 Rh6CG439600 Rh6DG426600
rosa_wichuraiana	Rw6G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
AccB1I	GGYRCC	1 cut(s)	454
AccB7I	CCANNNNNTGG	3 cut(s)	572, 824, 920
AccBSI	CCGCTC	1 cut(s)	815
AciI	CCGC	2 cut(s)	813, 1120
AclWI	GGATC	5 cut(s)	552, 713, 755, 869, 1058
AcsI	RAATTY	2 cut(s)	183, 1211
AfaI	GTAC	3 cut(s)	222, 300, 381
AfiI	CCNNNNNNNGG	6 cut(s)	213, 214, 572, 585, 824, 920
AgsI	TTSAA	3 cut(s)	965, 1102, 1163
AjnI	CCWGG	3 cut(s)	69, 130, 1024
AluBI	AGCT	7 cut(s)	163, 533, 572, 608, 917, 957, 1233
AluI	AGCT	7 cut(s)	163, 533, 572, 608, 917, 957, 1233
Alw21I	GWGCWC	2 cut(s)	58, 148
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	5 cut(s)	552, 713, 755, 869, 1058
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	3 cut(s)	530, 608, 611
ApoI	RAATTY	2 cut(s)	183, 1211
AspS9I	GGNCC	2 cut(s)	576, 923
AsuHPI	GGTGA	5 cut(s)	56, 471, 732, 903, 1013
AvaII	GGWCC	2 cut(s)	576, 923
AxyI	CCTNAGG	1 cut(s)	1185
BanI	GGYRCC	1 cut(s)	454
Bbv12I	GWGCWC	2 cut(s)	58, 148
BbvI	GCAGC	3 cut(s)	542, 595, 598
BccI	CCATC	8 cut(s)	43, 160, 192, 445, 490, 751, 826, 886
BcgI	CGANNNNNNTGC	2 cut(s)	1157, 1191
BciT130I	CCWGG	3 cut(s)	71, 132, 1026
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	3 cut(s)	366, 534, 735
BfmI	CTRYAG	2 cut(s)	164, 582
BisI	GCNGC	4 cut(s)	531, 609, 612, 1120
BlsI	GCNGC	4 cut(s)	532, 610, 613, 1121
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	3 cut(s)	71, 132, 1026
Bme18I	GGWCC	2 cut(s)	576, 923
BmgT120I	GGNCC	2 cut(s)	576, 923
BmiI	GGNNCC	3 cut(s)	456, 577, 578
BmrFI	CCNGG	3 cut(s)	71, 132, 1026
BmsI	GCATC	2 cut(s)	1106, 1141
BpmI	CTGGAG	1 cut(s)	53
BpuEI	CTTGAG	2 cut(s)	42, 825
BsaBI	GATNNNNATC	2 cut(s)	120, 742
BsaJI	CCNNGG	5 cut(s)	130, 212, 616, 1024, 1123
Bsc4I	CCNNNNNNNGG	6 cut(s)	213, 214, 572, 585, 824, 920
Bse1I	ACTGG	2 cut(s)	306, 899
Bse21I	CCTNAGG	1 cut(s)	1185
Bse3DI	GCAATG	1 cut(s)	532
Bse8I	GATNNNNATC	2 cut(s)	120, 742
BseBI	CCWGG	3 cut(s)	71, 132, 1026
BseDI	CCNNGG	5 cut(s)	130, 212, 616, 1024, 1123
BseGI	GGATG	4 cut(s)	148, 482, 743, 1121
BseJI	GATNNNNATC	2 cut(s)	120, 742
BseLI	CCNNNNNNNGG	6 cut(s)	213, 214, 572, 585, 824, 920
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	2 cut(s)	674, 1176
BseNI	ACTGG	2 cut(s)	306, 899
BseRI	GAGGAG	2 cut(s)	374, 428
BseXI	GCAGC	3 cut(s)	542, 595, 598
BseYI	CCCAGC	2 cut(s)	248, 572
BsgI	GTGCAG	1 cut(s)	1211
Bsh1285I	CGRYCG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	454
BsiEI	CGRYCG	1 cut(s)	323
BsiHKAI	GWGCWC	2 cut(s)	58, 148
BslFI	GGGAC	3 cut(s)	589, 876, 1166
BslI	CCNNNNNNNGG	6 cut(s)	213, 214, 572, 585, 824, 920
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	3 cut(s)	589, 876, 1166
BsnI	GGCC	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	58, 148
Bsp1407I	TGTACA	1 cut(s)	379
Bsp143I	GATC	7 cut(s)	61, 544, 718, 737, 760, 874, 1063
Bsp19I	CCATGG	1 cut(s)	1123
BspACI	CCGC	2 cut(s)	813, 1120
BspANI	GGCC	1 cut(s)	554
BspCNI	CTCAG	2 cut(s)	675, 1177
BspHI	TCATGA	1 cut(s)	627
BspLI	GGNNCC	3 cut(s)	456, 577, 578
BspPI	GGATC	5 cut(s)	552, 713, 755, 869, 1058
BspT107I	GGYRCC	1 cut(s)	454
BsrBI	CCGCTC	1 cut(s)	815
BsrDI	GCAATG	1 cut(s)	532
BsrGI	TGTACA	1 cut(s)	379
BsrI	ACTGG	2 cut(s)	306, 899
BssECI	CCNNGG	5 cut(s)	130, 212, 616, 1024, 1123
BssMI	GATC	7 cut(s)	61, 544, 718, 737, 760, 874, 1063
BssT1I	CCWWGG	3 cut(s)	212, 616, 1123
Bst2UI	CCWGG	3 cut(s)	71, 132, 1026
Bst4CI	ACNGT	3 cut(s)	324, 895, 1136
Bst6I	CTCTTC	1 cut(s)	777
BstAUI	TGTACA	1 cut(s)	379
BstDEI	CTNAG	3 cut(s)	683, 1074, 1185
BstDSI	CCRYGG	1 cut(s)	1123
BstF5I	GGATG	4 cut(s)	148, 482, 743, 1121
BstKTI	GATC	7 cut(s)	64, 547, 721, 740, 763, 877, 1066
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	7 cut(s)	61, 544, 718, 737, 760, 874, 1063
BstMCI	CGRYCG	1 cut(s)	323
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstNI	CCWGG	3 cut(s)	71, 132, 1026
BstSCI	CCNGG	3 cut(s)	69, 130, 1024
BstSFI	CTRYAG	2 cut(s)	164, 582
BstV1I	GCAGC	3 cut(s)	542, 595, 598
BstX2I	RGATCY	4 cut(s)	544, 718, 760, 1063
BstYI	RGATCY	4 cut(s)	544, 718, 760, 1063
Bsu36I	CCTNAGG	1 cut(s)	1185
BsuRI	GGCC	1 cut(s)	554
BtgI	CCRYGG	1 cut(s)	1123
BtsCI	GGATG	4 cut(s)	148, 482, 743, 1121
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	1 cut(s)	735
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	1 cut(s)	627
Cfr13I	GGNCC	2 cut(s)	576, 923
CseI	GACGC	1 cut(s)	1143
Csp6I	GTAC	3 cut(s)	221, 299, 380
CviQI	GTAC	3 cut(s)	221, 299, 380
DdeI	CTNAG	3 cut(s)	683, 1074, 1185
DpnI	GATC	7 cut(s)	63, 546, 720, 739, 762, 876, 1065
DpnII	GATC	7 cut(s)	61, 544, 718, 737, 760, 874, 1063
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
Eco130I	CCWWGG	3 cut(s)	212, 616, 1123
Eco32I	GATATC	1 cut(s)	940
Eco47I	GGWCC	2 cut(s)	576, 923
Eco81I	CCTNAGG	1 cut(s)	1185
EcoO109I	RGGNCCY	1 cut(s)	576
EcoRII	CCWGG	3 cut(s)	69, 130, 1024
EcoRV	GATATC	1 cut(s)	940
EcoT14I	CCWWGG	3 cut(s)	212, 616, 1123
EcoT22I	ATGCAT	1 cut(s)	501
ErhI	CCWWGG	3 cut(s)	212, 616, 1123
FaqI	GGGAC	3 cut(s)	589, 876, 1166
Fnu4HI	GCNGC	4 cut(s)	531, 609, 612, 1120
FokI	GGATG	4 cut(s)	135, 469, 730, 1128
Fsp4HI	GCNGC	4 cut(s)	531, 609, 612, 1120
FspBI	CTAG	3 cut(s)	366, 534, 735
GluI	GCNGC	4 cut(s)	531, 609, 612, 1120
GsaI	CCCAGC	2 cut(s)	252, 576
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	554
HgaI	GACGC	1 cut(s)	1143
HincII	GTYRAC	1 cut(s)	810
HindII	GTYRAC	1 cut(s)	810
HindIII	AAGCTT	1 cut(s)	955
HinfI	GANTC	7 cut(s)	29, 362, 466, 679, 961, 989, 1037
HphI	GGTGA	5 cut(s)	56, 471, 732, 903, 1013
Hpy166II	GTNNAC	3 cut(s)	479, 810, 827
Hpy188I	TCNGA	6 cut(s)	115, 285, 445, 684, 760, 874
Hpy188III	TCNNGA	4 cut(s)	59, 102, 628, 1059
Hpy8I	GTNNAC	3 cut(s)	479, 810, 827
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	3 cut(s)	324, 895, 1136
HpyCH4V	TGCA	6 cut(s)	4, 499, 530, 623, 1092, 1192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	3 cut(s)	683, 1074, 1185
KflI	GGGWCCC	1 cut(s)	576
Kzo9I	GATC	7 cut(s)	61, 544, 718, 737, 760, 874, 1063
LmnI	GCTCC	2 cut(s)	820, 1127
Lsp1109I	GCAGC	3 cut(s)	542, 595, 598
LweI	GCATC	2 cut(s)	1106, 1141
MaeI	CTAG	3 cut(s)	366, 534, 735
MaeIII	GTNAC	7 cut(s)	90, 291, 368, 712, 730, 1019, 1049
MalI	GATC	7 cut(s)	63, 546, 720, 739, 762, 876, 1065
MbiI	CCGCTC	1 cut(s)	815
MboI	GATC	7 cut(s)	61, 544, 718, 737, 760, 874, 1063
MboII	GAAGA	5 cut(s)	38, 266, 431, 764, 897
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	4 cut(s)	544, 718, 760, 1063
MhlI	GDGCHC	2 cut(s)	58, 148
MluCI	AATT	7 cut(s)	183, 192, 429, 446, 665, 707, 1211
MlyI	GAGTC	2 cut(s)	371, 983
MmeI	TCCRAC	2 cut(s)	901, 1168
Mph1103I	ATGCAT	1 cut(s)	501
MseI	TTAA	4 cut(s)	9, 462, 675, 1044
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	2 cut(s)	572, 917
MspR9I	CCNGG	3 cut(s)	71, 132, 1026
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	3 cut(s)	71, 132, 1026
MwoI	GCNNNNNNNGC	1 cut(s)	620
NcoI	CCATGG	1 cut(s)	1123
NdeII	GATC	7 cut(s)	61, 544, 718, 737, 760, 874, 1063
NlaIV	GGNNCC	3 cut(s)	456, 577, 578
NmuCI	GTSAC	4 cut(s)	90, 368, 730, 1019
NsiI	ATGCAT	1 cut(s)	501
PagI	TCATGA	1 cut(s)	627
PfeI	GAWTC	5 cut(s)	29, 466, 679, 961, 1037
PflMI	CCANNNNNTGG	3 cut(s)	572, 824, 920
PkrI	GCNGC	4 cut(s)	532, 610, 613, 1121
PleI	GAGTC	2 cut(s)	370, 983
PpsI	GAGTC	2 cut(s)	370, 983
PpuMI	RGGWCCY	1 cut(s)	576
PsiI	TTATAA	1 cut(s)	951
Psp5II	RGGWCCY	1 cut(s)	576
Psp6I	CCWGG	3 cut(s)	69, 130, 1024
PspFI	CCCAGC	2 cut(s)	248, 572
PspGI	CCWGG	3 cut(s)	69, 130, 1024
PspN4I	GGNNCC	3 cut(s)	456, 577, 578
PspPI	GGNCC	2 cut(s)	576, 923
PspPPI	RGGWCCY	1 cut(s)	576
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	4 cut(s)	544, 718, 760, 1063
PvuII	CAGCTG	2 cut(s)	572, 917
RsaI	GTAC	3 cut(s)	222, 300, 381
RsaNI	GTAC	3 cut(s)	221, 299, 380
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	4 cut(s)	9, 462, 675, 1044
SatI	GCNGC	4 cut(s)	531, 609, 612, 1120
Sau3AI	GATC	7 cut(s)	61, 544, 718, 737, 760, 874, 1063
Sau96I	GGNCC	2 cut(s)	576, 923
ScaI	AGTACT	1 cut(s)	300
SchI	GAGTC	2 cut(s)	371, 983
ScrFI	CCNGG	3 cut(s)	71, 132, 1026
SduI	GDGCHC	2 cut(s)	58, 148
SfaNI	GCATC	2 cut(s)	1106, 1141
SfcI	CTRYAG	2 cut(s)	164, 582
SinI	GGWCC	2 cut(s)	576, 923
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	57, 840
SmoI	CTYRAG	2 cut(s)	57, 840
Sse9I	AATT	7 cut(s)	183, 192, 429, 446, 665, 707, 1211
SsiI	CCGC	2 cut(s)	813, 1120
SspMI	CTAG	3 cut(s)	366, 534, 735
StyD4I	CCNGG	3 cut(s)	69, 130, 1024
StyI	CCWWGG	3 cut(s)	212, 616, 1123
TaaI	ACNGT	3 cut(s)	324, 895, 1136
TaqI	TCGA	3 cut(s)	392, 1109, 1215
TasI	AATT	7 cut(s)	183, 192, 429, 446, 665, 707, 1211
TatI	WGTACW	3 cut(s)	220, 298, 379
TauI	GCSGC	1 cut(s)	1122
TfiI	GAWTC	5 cut(s)	29, 466, 679, 961, 1037
Tru1I	TTAA	4 cut(s)	9, 462, 675, 1044
Tru9I	TTAA	4 cut(s)	9, 462, 675, 1044
TscAI	CASTG	1 cut(s)	735
TseFI	GTSAC	4 cut(s)	90, 368, 730, 1019
TseI	GCWGC	3 cut(s)	530, 608, 611
Tsp45I	GTSAC	4 cut(s)	90, 368, 730, 1019
TspDTI	ATGAA	7 cut(s)	87, 644, 678, 744, 1097, 1128, 1223
TspRI	CASTG	1 cut(s)	735
Van91I	CCANNNNNTGG	3 cut(s)	572, 824, 920
VpaK11BI	GGWCC	2 cut(s)	576, 923
XapI	RAATTY	2 cut(s)	183, 1211
XspI	CTAG	3 cut(s)	366, 534, 735
ZrmI	AGTACT	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.