Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008745

Physical Location & Seq

Genomic Coordinates Reverse (-)

33715902 .. 33720962

Gene Structure 5061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G368900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGCGGGGATCGCACAAACTCAAAAGGGTTTCTTGGGCTTCAGATGTTAATCTTTGTCAGGTTAAGCTGTTTCTGTTGGAGGAATCTCCTTCACAAGTTGGGTTGAGTGCTCAGGATCACCTCCAAGCAAAGGCATCGTGGTTGTCACATTCATCTGGCACAGGCTCGGATGACATTCTGCCCCCTGGATTTGAGGGAGCGTATTCGGCAAATCAGCTGCAGATTAACGTGTCTCAAATTCCCCTAATCAAATGGAGATGCCCCCCTAGGGTTGTGCTGAACTTCACTTGGCAAGTGGTTTGTGGGGAAGAAAGCAAAGAGGTGGAGATTCAAAATCAGAGAGAGATAAGAGTACTGGAAGCAGTTTATCCACGCCCATCTGCCATTCCTCTAAACCCCTCTGTTTTGGCAGATGTTGAAGACTCTGGTCATAATGACGTGCAACCTCCTGTGATACCTATCACTTCCATTGAAGATGAAGATGTAGGAGTCGACACATCATCTGCATCCATGGCACCGTTTAACATTCACACAAGCACACAGTCCTTTCTATCGGTTCAGGGAATTGCAGCTCCATCTCAGAGCGTTGTACCTAACAATAGAAACCACCCTACTTCAAATAAGCCAGTAGCTGGAATTCCTGTTGGTGTAGAACCGGATGTTGTAGCTGCTGCCTCTGCCGCCTTTGGTGCAATTGTGAATAGCAATGAGCATGGAAATATGATTGACCATGAATTGCTCATTAAGATTCTGAGCAACCCAAAAATGATTGAGAAATTGGTTAAAGATCCACAGCCAATGACAAGGCCACCTCAAATGTCCATAGCAGATCCACCTCCTGTTCACATTAACCGGACAGAGAGCAGCAGCACACCTTCATCGACTGCTCTATCAAGCGGACATTTCTACCCTCAACCAAATGTTGCTGGAATGGGACGTTTTCCTGATGCACGACCACCTCCCCATGCAGCAATTTCAGTTCCTTCTCCACCTGCTGTTGGACCTCCACCAGCAAAGGACATCAACTATTATAAAAGCTTGATTCAGCAACATGGAGGAGATAGGCATGACAGCTTTCCACCATTTGGTAACCGTCATAGCGACCATTCAGCTATAAACCAGGAATCCAATAATGGCTACAAATCCAGAGATTCAAAACCTAAGATAATGAAGCCATGCATATACTTCAATAGTTCAAGGGGATGCCGCCATGGAGCGAATTGTGCATACCAGCATGATGCGTCGTTCCAGCCTCGGGGTAGTAGTAGTGCGCCGGAGGTGCACAGTACAAAGAGAATGAAAATGGATAGGGAGATTAGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

442

Amino Acids

47.82

Weight (kDa)

6.65

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19860 AT1G19860
fragaria_vesca	FvH4_2g38810 FvH4_2g38810 FvH4_2g38810 FvH4_2g38810
malus_domestica	MD08G1015700.v1.1 MD15G1014600.v1.1
prunus_persica	Prupe.1G368900_v2.0.a1
pyrus_communis	pycom08g01370 pycom15g01270
rosa_chinensis	RchiOBHm_Chr6g0302461
rosa_laevigata	RLG00000011169
rosa_multiflora	Rmu_co8159708.1_g000001 Rmu_co8376349.1_g000001 Rmu_sc0011021.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165750
rosa_rugosa	Rorug06G0314400
rosa_samantha	Rh6AG427500 Rh6BG475200 Rh6CG439600 Rh6DG426600
rosa_wichuraiana	Rw6G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1032
AarI	CACCTGC	1 cut(s)	1000
Acc36I	ACCTGC	1 cut(s)	1000
AccB1I	GGYRCC	1 cut(s)	514
AccB7I	CCANNNNNTGG	2 cut(s)	632, 1085
AccI	GTMKAC	1 cut(s)	492
AciI	CCGC	4 cut(s)	4, 681, 897, 1207
AclWI	GGATC	4 cut(s)	16, 123, 782, 824
AcsI	RAATTY	2 cut(s)	237, 636
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	3 cut(s)	354, 591, 1288
AfiI	CCNNNNNNNGG	6 cut(s)	130, 268, 632, 998, 1085, 1255
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	7 cut(s)	332, 419, 473, 618, 1155, 1189, 1197
AjiI	CACGTC	1 cut(s)	439
AjnI	CCWGG	2 cut(s)	184, 1119
AluBI	AGCT	8 cut(s)	67, 217, 572, 632, 668, 1038, 1074, 1112
AluI	AGCT	8 cut(s)	67, 217, 572, 632, 668, 1038, 1074, 1112
Alw21I	GWGCWC	2 cut(s)	112, 1284
Alw26I	GTCTC	1 cut(s)	237
Alw44I	GTGCAC	1 cut(s)	1280
AlwI	GGATC	4 cut(s)	16, 123, 782, 824
AlwNI	CAGNNNCTG	1 cut(s)	632
Ama87I	CYCGRG	1 cut(s)	1254
AoxI	GGCC	1 cut(s)	806
ApaLI	GTGCAC	1 cut(s)	1280
ApeKI	GCWGC	7 cut(s)	217, 569, 668, 671, 864, 867, 968
ApoI	RAATTY	2 cut(s)	237, 636
AspA2I	CCTAGG	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	1273
AspS9I	GGNCC	1 cut(s)	1001
AsuHPI	GGTGA	1 cut(s)	110
AvaI	CYCGRG	1 cut(s)	1254
AvaII	GGWCC	1 cut(s)	1001
AvrII	CCTAGG	1 cut(s)	266
BaeGI	GKGCMC	1 cut(s)	1284
BanI	GGYRCC	1 cut(s)	514
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	2 cut(s)	112, 1284
BbvI	GCAGC	7 cut(s)	204, 581, 655, 658, 876, 879, 980
BccI	CCATC	2 cut(s)	385, 583
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BciT130I	CCWGG	2 cut(s)	186, 1121
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	1000
BisI	GCNGC	9 cut(s)	218, 570, 669, 672, 681, 865, 868, 969, 1207
BlnI	CCTAGG	1 cut(s)	266
BlsI	GCNGC	9 cut(s)	219, 571, 670, 673, 682, 866, 869, 970, 1208
BmcAI	AGTACT	1 cut(s)	354
Bme1390I	CCNGG	2 cut(s)	186, 1121
Bme18I	GGWCC	1 cut(s)	1001
BmeT110I	CYCGRG	1 cut(s)	1254
BmgBI	CACGTC	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	1001
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	2 cut(s)	186, 1121
BmsI	GCATC	6 cut(s)	143, 248, 515, 937, 1193, 1228
BoxI	GACNNNNGTC	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	111
BsaBI	GATNNNNATC	2 cut(s)	48, 458
BsaJI	CCNNGG	5 cut(s)	184, 266, 510, 1210, 1253
BsaWI	WCCGGW	2 cut(s)	655, 852
Bsc4I	CCNNNNNNNGG	6 cut(s)	130, 268, 632, 998, 1085, 1255
Bse1I	ACTGG	2 cut(s)	360, 626
Bse3DI	GCAATG	1 cut(s)	712
Bse8I	GATNNNNATC	2 cut(s)	48, 458
BseBI	CCWGG	2 cut(s)	186, 1121
BseDI	CCNNGG	5 cut(s)	184, 266, 510, 1210, 1253
BseGI	GGATG	4 cut(s)	175, 506, 664, 1208
BseJI	GATNNNNATC	2 cut(s)	48, 458
BseLI	CCNNNNNNNGG	6 cut(s)	130, 268, 632, 998, 1085, 1255
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	3 cut(s)	125, 593, 743
BseNI	ACTGG	2 cut(s)	360, 626
BseRI	GAGGAG	1 cut(s)	1071
BseSI	GKGCMC	1 cut(s)	1284
BseXI	GCAGC	7 cut(s)	204, 581, 655, 658, 876, 879, 980
BshFI	GGCC	1 cut(s)	808
BshNI	GGYRCC	1 cut(s)	514
BsiHKAI	GWGCWC	2 cut(s)	112, 1284
BsiHKCI	CYCGRG	1 cut(s)	1254
BsiSI	CCGG	3 cut(s)	656, 853, 1274
BslFI	GGGAC	1 cut(s)	948
BslI	CCNNNNNNNGG	6 cut(s)	130, 268, 632, 998, 1085, 1255
BsmAI	GTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	948
BsnI	GGCC	1 cut(s)	808
BsoBI	CYCGRG	1 cut(s)	1254
Bsp1286I	GDGCHC	2 cut(s)	112, 1284
Bsp143I	GATC	4 cut(s)	8, 115, 787, 829
Bsp19I	CCATGG	2 cut(s)	510, 1210
BspACI	CCGC	4 cut(s)	4, 681, 897, 1207
BspANI	GGCC	1 cut(s)	808
BspCNI	CTCAG	3 cut(s)	124, 592, 744
BspLI	GGNNCC	1 cut(s)	516
BspMAI	CTGCAG	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	1000
BspPI	GGATC	4 cut(s)	16, 123, 782, 824
BspT107I	GGYRCC	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	712
BsrI	ACTGG	2 cut(s)	360, 626
BssECI	CCNNGG	5 cut(s)	184, 266, 510, 1210, 1253
BssMI	GATC	4 cut(s)	8, 115, 787, 829
BssT1I	CCWWGG	3 cut(s)	266, 510, 1210
Bst2UI	CCWGG	2 cut(s)	186, 1121
Bst4CI	ACNGT	4 cut(s)	519, 543, 1094, 1286
BstDEI	CTNAG	4 cut(s)	111, 579, 752, 1161
BstDSI	CCRYGG	2 cut(s)	510, 1210
BstEII	GGTNACC	1 cut(s)	1088
BstF5I	GGATG	4 cut(s)	175, 506, 664, 1208
BstHHI	GCGC	1 cut(s)	1273
BstKTI	GATC	4 cut(s)	11, 118, 790, 832
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	4 cut(s)	8, 115, 787, 829
BstMWI	GCNNNNNNNGC	8 cut(s)	10, 206, 512, 677, 680, 689, 1223, 1279
BstNI	CCWGG	2 cut(s)	186, 1121
BstPAI	GACNNNNGTC	1 cut(s)	426
BstPI	GGTNACC	1 cut(s)	1088
BstSCI	CCNGG	2 cut(s)	184, 1119
BstSFI	CTRYAG	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	1284
BstV1I	GCAGC	7 cut(s)	204, 581, 655, 658, 876, 879, 980
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	2 cut(s)	787, 829
BstYI	RGATCY	2 cut(s)	787, 829
BsuRI	GGCC	1 cut(s)	808
BtgI	CCRYGG	2 cut(s)	510, 1210
BtrI	CACGTC	1 cut(s)	439
BtsCI	GGATG	4 cut(s)	175, 506, 664, 1208
BveI	ACCTGC	1 cut(s)	1000
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	1 cut(s)	1273
Cfr13I	GGNCC	1 cut(s)	1001
CseI	GACGC	1 cut(s)	1230
Csp6I	GTAC	3 cut(s)	353, 590, 1287
CviAII	CATG	9 cut(s)	511, 713, 731, 965, 1052, 1067, 1176, 1211, 1235
CviQI	GTAC	3 cut(s)	353, 590, 1287
DdeI	CTNAG	4 cut(s)	111, 579, 752, 1161
DpnI	GATC	4 cut(s)	10, 117, 789, 831
DpnII	GATC	4 cut(s)	8, 115, 787, 829
Eco130I	CCWWGG	3 cut(s)	266, 510, 1210
Eco47I	GGWCC	1 cut(s)	1001
Eco57I	CTGAAG	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	1254
Eco91I	GGTNACC	1 cut(s)	1088
EcoO65I	GGTNACC	1 cut(s)	1088
EcoRI	GAATTC	1 cut(s)	636
EcoRII	CCWGG	2 cut(s)	184, 1119
EcoT14I	CCWWGG	3 cut(s)	266, 510, 1210
EcoT22I	ATGCAT	1 cut(s)	1181
ErhI	CCWWGG	3 cut(s)	266, 510, 1210
FaeI	CATG	9 cut(s)	514, 716, 734, 968, 1055, 1070, 1179, 1214, 1238
FalI	AAGNNNNNCTT	2 cut(s)	16, 48
FaqI	GGGAC	1 cut(s)	948
FatI	CATG	9 cut(s)	510, 712, 730, 964, 1051, 1066, 1175, 1210, 1234
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	9 cut(s)	218, 570, 669, 672, 681, 865, 868, 969, 1207
FokI	GGATG	4 cut(s)	182, 493, 671, 1215
Fsp4HI	GCNGC	9 cut(s)	218, 570, 669, 672, 681, 865, 868, 969, 1207
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	1272
GluI	GCNGC	9 cut(s)	218, 570, 669, 672, 681, 865, 868, 969, 1207
HaeIII	GGCC	1 cut(s)	808
HapII	CCGG	3 cut(s)	656, 853, 1274
HgaI	GACGC	1 cut(s)	1230
HhaI	GCGC	1 cut(s)	1273
Hin1II	CATG	9 cut(s)	514, 716, 734, 968, 1055, 1070, 1179, 1214, 1238
Hin6I	GCGC	1 cut(s)	1271
HinP1I	GCGC	1 cut(s)	1271
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HindIII	AAGCTT	1 cut(s)	1036
HinfI	GANTC	8 cut(s)	83, 328, 422, 489, 748, 1042, 1124, 1151
HpaII	CCGG	3 cut(s)	656, 853, 1274
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	3 cut(s)	493, 844, 1282
Hpy188I	TCNGA	5 cut(s)	43, 169, 339, 582, 753
Hpy188III	TCNNGA	3 cut(s)	113, 944, 1146
Hpy8I	GTNNAC	3 cut(s)	493, 844, 1282
Hpy99I	CGWCG	1 cut(s)	1246
HpyAV	CCTTC	3 cut(s)	99, 885, 993
HpyCH4III	ACNGT	4 cut(s)	519, 543, 1094, 1286
HpyCH4IV	ACGT	3 cut(s)	228, 438, 937
HpyF10VI	GCNNNNNNNGC	8 cut(s)	10, 206, 512, 677, 680, 689, 1223, 1279
HpyF3I	CTNAG	4 cut(s)	111, 579, 752, 1161
HpySE526I	ACGT	3 cut(s)	228, 438, 937
Hsp92II	CATG	9 cut(s)	514, 716, 734, 968, 1055, 1070, 1179, 1214, 1238
HspAI	GCGC	1 cut(s)	1271
Kzo9I	GATC	4 cut(s)	8, 115, 787, 829
LmnI	GCTCC	3 cut(s)	197, 577, 1214
Lsp1109I	GCAGC	7 cut(s)	204, 581, 655, 658, 876, 879, 980
LweI	GCATC	6 cut(s)	143, 248, 515, 937, 1193, 1228
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	3 cut(s)	228, 438, 937
MaeIII	GTNAC	2 cut(s)	144, 1088
MalI	GATC	4 cut(s)	10, 117, 789, 831
MboI	GATC	4 cut(s)	8, 115, 787, 829
MboII	GAAGA	4 cut(s)	320, 431, 485, 491
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	2 cut(s)	787, 829
MhlI	GDGCHC	2 cut(s)	112, 1284
MluCI	AATT	8 cut(s)	237, 564, 636, 693, 734, 776, 972, 1219
MlyI	GAGTC	2 cut(s)	416, 498
MmeI	TCCRAC	2 cut(s)	57, 979
Mph1103I	ATGCAT	1 cut(s)	1181
MseI	TTAA	8 cut(s)	48, 63, 225, 522, 744, 783, 849, 1324
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	3 cut(s)	656, 853, 1274
MspR9I	CCNGG	2 cut(s)	186, 1121
MunI	CAATTG	1 cut(s)	693
MvaI	CCWGG	2 cut(s)	186, 1121
MwoI	GCNNNNNNNGC	8 cut(s)	10, 206, 512, 677, 680, 689, 1223, 1279
NcoI	CCATGG	2 cut(s)	510, 1210
NdeII	GATC	4 cut(s)	8, 115, 787, 829
NlaIII	CATG	9 cut(s)	514, 716, 734, 968, 1055, 1070, 1179, 1214, 1238
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	1181
PaqCI	CACCTGC	1 cut(s)	1000
PfeI	GAWTC	6 cut(s)	83, 328, 748, 1042, 1124, 1151
PflMI	CCANNNNNTGG	2 cut(s)	632, 1085
PkrI	GCNGC	9 cut(s)	219, 571, 670, 673, 682, 866, 869, 970, 1208
PleI	GAGTC	2 cut(s)	416, 497
PpsI	GAGTC	2 cut(s)	416, 497
PshAI	GACNNNNGTC	1 cut(s)	426
PsiI	TTATAA	1 cut(s)	1032
Psp6I	CCWGG	2 cut(s)	184, 1119
PspEI	GGTNACC	1 cut(s)	1088
PspGI	CCWGG	2 cut(s)	184, 1119
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	1 cut(s)	1001
PstI	CTGCAG	1 cut(s)	222
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	2 cut(s)	787, 829
PvuII	CAGCTG	1 cut(s)	217
RsaI	GTAC	3 cut(s)	354, 591, 1288
RsaNI	GTAC	3 cut(s)	353, 590, 1287
SalI	GTCGAC	1 cut(s)	491
SaqAI	TTAA	8 cut(s)	48, 63, 225, 522, 744, 783, 849, 1324
SatI	GCNGC	9 cut(s)	218, 570, 669, 672, 681, 865, 868, 969, 1207
Sau3AI	GATC	4 cut(s)	8, 115, 787, 829
Sau96I	GGNCC	1 cut(s)	1001
ScaI	AGTACT	1 cut(s)	354
SchI	GAGTC	2 cut(s)	416, 498
ScrFI	CCNGG	2 cut(s)	186, 1121
SduI	GDGCHC	2 cut(s)	112, 1284
SfaNI	GCATC	6 cut(s)	143, 248, 515, 937, 1193, 1228
SfcI	CTRYAG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	1001
Sse9I	AATT	8 cut(s)	237, 564, 636, 693, 734, 776, 972, 1219
SsiI	CCGC	4 cut(s)	4, 681, 897, 1207
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	184, 1119
StyI	CCWWGG	3 cut(s)	266, 510, 1210
TaaI	ACNGT	4 cut(s)	519, 543, 1094, 1286
TaiI	ACGT	3 cut(s)	231, 441, 940
TaqI	TCGA	2 cut(s)	492, 881
TasI	AATT	8 cut(s)	237, 564, 636, 693, 734, 776, 972, 1219
TatI	WGTACW	2 cut(s)	352, 1286
TauI	GCSGC	2 cut(s)	683, 1209
TfiI	GAWTC	6 cut(s)	83, 328, 748, 1042, 1124, 1151
Tru1I	TTAA	8 cut(s)	48, 63, 225, 522, 744, 783, 849, 1324
Tru9I	TTAA	8 cut(s)	48, 63, 225, 522, 744, 783, 849, 1324
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	7 cut(s)	217, 569, 668, 671, 864, 867, 968
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	6 cut(s)	141, 492, 747, 867, 1184, 1313
Van91I	CCANNNNNTGG	2 cut(s)	632, 1085
VneI	GTGCAC	1 cut(s)	1280
VpaK11BI	GGWCC	1 cut(s)	1001
XapI	RAATTY	2 cut(s)	237, 636
XmaJI	CCTAGG	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	492
XspI	CTAG	1 cut(s)	267
ZrmI	AGTACT	1 cut(s)	354
Zsp2I	ATGCAT	1 cut(s)	1181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.