Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008745

Physical Location & Seq

Genomic Coordinates Reverse (-)

852501 .. 857283

Gene Structure 4783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1014600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGCGGGGATTGCACAAAACGAAAAGGATTTCTTGGGCTTCAGATGTTAATCTTTGTCAGGTAAAGCTGTTTCTCTTGGAGGAATCTCCTTCGCAAGTTGGGCTGAGCGCTCAAGATCACCTCCAAGTGAAGGCATCTTGGCCGTCACATTCATCTGGAACAGGCTCAGATGACACTCTACCCCCTGGATTTGAGGGAGCTCATCCGGCAAATCAGCCGCAGATTGACTTGTCTCAAATTCCTTTGATCAAATGGAGATGCCCTCCTAAGGTTGTGCTAAACTTCACTTGGCAAGTGGTTTCTGGGGACGAAAGCAAAGAGATGGAGATTCAAAATCAGAGAGAGATAAGAGTACTGGAAGCTGTTTATCCACGGCCATCTGCCATTCCTTTAAACCCCTCTGTTTTGGCAGATGTTGAGGACTCTAGTCATACTGGTGGGCAACCTCTTATCATACCTATTACTCCTATTGAAGACGAAGATGCAGGAGGTGAAGCCTCATCCGAATCCGTGGAACCGTTTAACAATTCCACAAGCTCGCAGTCCTTTCTATCCGTTCAGGGAATTTCGGCTCCATCTCAAAACAGTATTCCTGACAATGGAAACCACATACCTGCAACACTTGGAATGCCTATTGCAGCAGAACCTGATGTTGTAGCTGCTGCCCTTGGTGCAATTGTGAATAACAATGAGCACGGAAATATGATTGATCATGAATTGCTCATTAAGATTCTCAACAACCCGAAAATGATTGAGAAATTGGTTACAGATCAACAACCAATAACAAGGCCACCCCAAATGGGCGTATCAGATTCATCTCACATGATCAGGACAGAAATCAACACACCTTCATCAAGTGGACATTTCTATCCCCCACCACATGTTGCTGGAACGGGACATTTTCCTGATGCACGACTACCTCCTCCTGCATCAATTTCAGTTCATTCTTCGCCTTCTGTTGGACCACCTCCACTAGCAAAGGACATCAACTACTATAAAAACTTGATTCAACAACATGGAGGAGACAGGCAGGACAACTTTCCACCATTTGGAAACCGACATAGCGATCATTCATCTGTAAACCAAGAATCCAATAATAACTACAAACCAAGAGATTCAAAGCCCAAGAATATGAAGCCTTGCATATACTTCAACAGTGCAAGGGGATGCAACAAAGGAGCAAATTGCACATTCCAGCATGATGCATCGTTCCAGCCACGAGGTAGTAGCGTGCCGGAGGTGCACAAGACAAAGAGAATGAAAATGGATAGGGAGATCAGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

429

Amino Acids

46.64

Weight (kDa)

6.04

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19860 AT1G19860
fragaria_vesca	FvH4_2g38810 FvH4_2g38810 FvH4_2g38810 FvH4_2g38810
malus_domestica	MD08G1015700.v1.1 MD15G1014600.v1.1
prunus_persica	Prupe.1G368900_v2.0.a1
pyrus_communis	pycom08g01370 pycom15g01270
rosa_chinensis	RchiOBHm_Chr6g0302461
rosa_laevigata	RLG00000011169
rosa_multiflora	Rmu_co8159708.1_g000001 Rmu_co8376349.1_g000001 Rmu_sc0011021.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165750
rosa_rugosa	Rorug06G0314400
rosa_samantha	Rh6AG427500 Rh6BG475200 Rh6CG439600 Rh6DG426600
rosa_wichuraiana	Rw6G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	622
AccB7I	CCANNNNNTGG	1 cut(s)	1049
AciI	CCGC	2 cut(s)	4, 218
AcoI	YGGCCR	2 cut(s)	140, 374
AcsI	RAATTY	2 cut(s)	237, 564
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	1 cut(s)	354
AfeI	AGCGCT	1 cut(s)	109
AfiI	CCNNNNNNNGG	6 cut(s)	130, 268, 599, 800, 959, 1049
AflIII	ACRYGT	1 cut(s)	880
AgsI	TTSAA	5 cut(s)	332, 473, 1010, 1119, 1153
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	5 cut(s)	67, 200, 362, 537, 659
AluI	AGCT	5 cut(s)	67, 200, 362, 537, 659
Alw21I	GWGCWC	3 cut(s)	202, 696, 1245
Alw26I	GTCTC	2 cut(s)	237, 1017
Alw44I	GTGCAC	1 cut(s)	1241
AlwNI	CAGNNNCTG	1 cut(s)	647
Aor51HI	AGCGCT	1 cut(s)	109
AoxI	GGCC	3 cut(s)	140, 374, 788
ApaLI	GTGCAC	1 cut(s)	1241
ApeKI	GCWGC	3 cut(s)	638, 659, 662
ApoI	RAATTY	2 cut(s)	237, 564
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	962
AsuHPI	GGTGA	2 cut(s)	110, 503
AvaII	GGWCC	1 cut(s)	962
AxyI	CCTNAGG	1 cut(s)	267
BaeGI	GKGCMC	1 cut(s)	1245
BanII	GRGCYC	1 cut(s)	202
BauI	CACGAG	1 cut(s)	1218
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	3 cut(s)	202, 696, 1245
BbvI	GCAGC	3 cut(s)	646, 649, 650
BccI	CCATC	3 cut(s)	316, 385, 583
BceAI	ACGGC	2 cut(s)	127, 389
BciT130I	CCWGG	1 cut(s)	186
BclI	TGATCA	3 cut(s)	246, 709, 825
BcoDI	GTCTC	2 cut(s)	237, 1017
BfaI	CTAG	2 cut(s)	426, 974
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	4 cut(s)	218, 639, 660, 663
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	4 cut(s)	219, 640, 661, 664
BmcAI	AGTACT	1 cut(s)	354
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	1 cut(s)	962
BmgT120I	GGNCC	1 cut(s)	962
BmiI	GGNNCC	2 cut(s)	516, 573
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	8 cut(s)	143, 248, 472, 898, 938, 1157, 1192, 1214
BoxI	GACNNNNGTC	1 cut(s)	426
BpiI	GAAGAC	1 cut(s)	480
BplI	GAGNNNNNCTC	2 cut(s)	247, 279
Bpu1102I	GCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	184, 371, 510, 667
Bsc4I	CCNNNNNNNGG	6 cut(s)	130, 268, 599, 800, 959, 1049
Bse1I	ACTGG	2 cut(s)	360, 439
Bse21I	CCTNAGG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	4 cut(s)	184, 371, 510, 667
BseGI	GGATG	3 cut(s)	202, 500, 1172
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	6 cut(s)	130, 268, 599, 800, 959, 1049
BseMII	CTCAG	2 cut(s)	95, 180
BseNI	ACTGG	2 cut(s)	360, 439
BseRI	GAGGAG	2 cut(s)	912, 1035
BseSI	GKGCMC	1 cut(s)	1245
BseXI	GCAGC	3 cut(s)	646, 649, 650
BshFI	GGCC	3 cut(s)	142, 376, 790
BsiHKAI	GWGCWC	3 cut(s)	202, 696, 1245
BsiSI	CCGG	2 cut(s)	206, 1235
BslFI	GGGAC	2 cut(s)	320, 909
BslI	CCNNNNNNNGG	6 cut(s)	130, 268, 599, 800, 959, 1049
BsmAI	GTCTC	2 cut(s)	237, 1017
BsmFI	GGGAC	2 cut(s)	320, 909
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	3 cut(s)	142, 376, 790
Bsp1286I	GDGCHC	3 cut(s)	202, 696, 1245
Bsp143I	GATC	7 cut(s)	115, 246, 709, 769, 825, 1066, 1275
Bsp1720I	GCTNAGC	1 cut(s)	104
BspACI	CCGC	2 cut(s)	4, 218
BspANI	GGCC	3 cut(s)	142, 376, 790
BspCNI	CTCAG	2 cut(s)	96, 179
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	2 cut(s)	516, 573
BspMI	ACCTGC	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	360, 439
BssECI	CCNNGG	4 cut(s)	184, 371, 510, 667
BssMI	GATC	7 cut(s)	115, 246, 709, 769, 825, 1066, 1275
BssSI	CACGAG	1 cut(s)	1218
BssT1I	CCWWGG	1 cut(s)	667
Bst2BI	CACGAG	1 cut(s)	1218
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	3 cut(s)	519, 587, 1157
BstC8I	GCNNGC	2 cut(s)	539, 1232
BstDEI	CTNAG	3 cut(s)	104, 166, 267
BstDSI	CCRYGG	2 cut(s)	371, 510
BstF5I	GGATG	3 cut(s)	202, 500, 1172
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	7 cut(s)	118, 249, 712, 772, 828, 1069, 1278
BstMAI	GTCTC	2 cut(s)	237, 1017
BstMBI	GATC	7 cut(s)	115, 246, 709, 769, 825, 1066, 1275
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 100, 206, 671, 1240
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	884
BstPAI	GACNNNNGTC	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	1245
BstV1I	GCAGC	3 cut(s)	646, 649, 650
BstV2I	GAAGAC	1 cut(s)	480
Bsu36I	CCTNAGG	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	142, 376, 790
BtgI	CCRYGG	2 cut(s)	371, 510
BtsCI	GGATG	3 cut(s)	202, 500, 1172
BtsIMutI	CAGTG	1 cut(s)	1162
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	2 cut(s)	539, 1232
CaiI	CAGNNNCTG	1 cut(s)	647
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	962
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	5 cut(s)	713, 823, 881, 1016, 1199
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	3 cut(s)	104, 166, 267
DpnI	GATC	7 cut(s)	117, 248, 711, 771, 827, 1068, 1277
DpnII	GATC	7 cut(s)	115, 246, 709, 769, 825, 1066, 1275
DraI	TTTAAA	1 cut(s)	393
EaeI	YGGCCR	2 cut(s)	140, 374
Ecl136II	GAGCTC	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	667
Eco24I	GRGCYC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	962
Eco47III	AGCGCT	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	24
Eco81I	CCTNAGG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	667
EcoT22I	ATGCAT	1 cut(s)	1207
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	667
FaeI	CATG	5 cut(s)	716, 826, 884, 1019, 1202
FalI	AAGNNNNNCTT	2 cut(s)	16, 48
FaqI	GGGAC	2 cut(s)	320, 909
FatI	CATG	5 cut(s)	712, 822, 880, 1015, 1198
FbaI	TGATCA	3 cut(s)	246, 709, 825
Fnu4HI	GCNGC	4 cut(s)	218, 639, 660, 663
FokI	GGATG	3 cut(s)	189, 487, 1179
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	4 cut(s)	218, 639, 660, 663
FspBI	CTAG	2 cut(s)	426, 974
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	4 cut(s)	218, 639, 660, 663
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	142, 376, 790
HapII	CCGG	2 cut(s)	206, 1235
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	5 cut(s)	716, 826, 884, 1019, 1202
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	9 cut(s)	83, 328, 422, 506, 730, 812, 1006, 1088, 1115
HpaII	CCGG	2 cut(s)	206, 1235
HphI	GGTGA	2 cut(s)	110, 503
Hpy166II	GTNNAC	3 cut(s)	860, 1081, 1243
Hpy188I	TCNGA	5 cut(s)	43, 169, 339, 505, 811
Hpy188III	TCNNGA	6 cut(s)	113, 156, 593, 713, 829, 905
Hpy8I	GTNNAC	3 cut(s)	860, 1081, 1243
HpyAV	CCTTC	4 cut(s)	99, 124, 858, 963
HpyCH4III	ACNGT	3 cut(s)	519, 587, 1157
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 100, 206, 671, 1240
HpyF3I	CTNAG	3 cut(s)	104, 166, 267
Hsp92II	CATG	5 cut(s)	716, 826, 884, 1019, 1202
HspAI	GCGC	1 cut(s)	108
Ksp22I	TGATCA	3 cut(s)	246, 709, 825
Kzo9I	GATC	7 cut(s)	115, 246, 709, 769, 825, 1066, 1275
LmnI	GCTCC	3 cut(s)	197, 577, 1178
Lsp1109I	GCAGC	3 cut(s)	646, 649, 650
LweI	GCATC	8 cut(s)	143, 248, 472, 898, 938, 1157, 1192, 1214
MaeI	CTAG	2 cut(s)	426, 974
MaeIII	GTNAC	2 cut(s)	144, 763
MalI	GATC	7 cut(s)	117, 248, 711, 771, 827, 1068, 1277
MboI	GATC	7 cut(s)	115, 246, 709, 769, 825, 1066, 1275
MboII	GAAGA	3 cut(s)	485, 491, 939
MfeI	CAATTG	1 cut(s)	675
MhlI	GDGCHC	3 cut(s)	202, 696, 1245
MluCI	AATT	8 cut(s)	237, 526, 564, 675, 716, 758, 933, 1183
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	940
Mph1103I	ATGCAT	1 cut(s)	1207
MseI	TTAA	4 cut(s)	48, 392, 522, 726
MslI	CAYNNNNRTG	1 cut(s)	435
MspI	CCGG	2 cut(s)	206, 1235
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	5 cut(s)	10, 100, 206, 671, 1240
NdeII	GATC	7 cut(s)	115, 246, 709, 769, 825, 1066, 1275
NlaIII	CATG	5 cut(s)	716, 826, 884, 1019, 1202
NlaIV	GGNNCC	2 cut(s)	516, 573
NmuCI	GTSAC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	1207
NspI	RCATGY	1 cut(s)	884
PagI	TCATGA	1 cut(s)	712
PciI	ACATGT	1 cut(s)	880
PctI	GAATGC	1 cut(s)	633
PfeI	GAWTC	8 cut(s)	83, 328, 506, 730, 812, 1006, 1088, 1115
PflMI	CCANNNNNTGG	1 cut(s)	1049
PkrI	GCNGC	4 cut(s)	219, 640, 661, 664
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PscI	ACATGT	1 cut(s)	880
PshAI	GACNNNNGTC	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	516, 573
PspPI	GGNCC	1 cut(s)	962
PstNI	CAGNNNCTG	1 cut(s)	647
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	435
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	4 cut(s)	48, 392, 522, 726
SatI	GCNGC	4 cut(s)	218, 639, 660, 663
Sau3AI	GATC	7 cut(s)	115, 246, 709, 769, 825, 1066, 1275
Sau96I	GGNCC	1 cut(s)	962
ScaI	AGTACT	1 cut(s)	354
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	3 cut(s)	202, 696, 1245
SfaNI	GCATC	8 cut(s)	143, 248, 472, 898, 938, 1157, 1192, 1214
SinI	GGWCC	1 cut(s)	962
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	8 cut(s)	237, 526, 564, 675, 716, 758, 933, 1183
SsiI	CCGC	2 cut(s)	4, 218
SspMI	CTAG	2 cut(s)	426, 974
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	667
TaaI	ACNGT	3 cut(s)	519, 587, 1157
TasI	AATT	8 cut(s)	237, 526, 564, 675, 716, 758, 933, 1183
TatI	WGTACW	1 cut(s)	352
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	8 cut(s)	83, 328, 506, 730, 812, 1006, 1088, 1115
Tru1I	TTAA	4 cut(s)	48, 392, 522, 726
Tru9I	TTAA	4 cut(s)	48, 392, 522, 726
TscAI	CASTG	1 cut(s)	1162
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	3 cut(s)	638, 659, 662
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	8 cut(s)	141, 729, 804, 840, 932, 1062, 1148, 1274
TspGWI	ACGGA	3 cut(s)	499, 544, 711
TspRI	CASTG	1 cut(s)	1162
Van91I	CCANNNNNTGG	1 cut(s)	1049
VneI	GTGCAC	1 cut(s)	1241
VpaK11BI	GGWCC	1 cut(s)	962
XapI	RAATTY	2 cut(s)	237, 564
XceI	RCATGY	1 cut(s)	884
XspI	CTAG	2 cut(s)	426, 974
ZrmI	AGTACT	1 cut(s)	354
Zsp2I	ATGCAT	1 cut(s)	1207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.