Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008745

Physical Location & Seq

Genomic Coordinates Reverse (-)

7408517 .. 7409844

Gene Structure 1328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00165750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCATATTACTAATTTTTCACAGGTTGTACTGAACTTGGCCTGGCAAGTTGTTGCTGGGGAAGAAAGCAAAGAGGTAGAGAGTGAAAATCAGAGAGAGTTACGAGTACTGGAAGCAGTTTATCCACGACCATCTGCTATTCCTCTAAACCCCTTTGTAGATGTGGAGGAGTCTAGTCACAATGATGTACAACCTCTTTCGATACCTATTACTCCTATTGAAGAGGAAGATGTAGCAATTGGTACATCATCTGAATTCATGGTGCCATTGAAGATTCCCACAAGTTCACAATCCTACCTATCAATGCATGGAACTCCAGCTCAACCTCAAAGCAGTGCAGTTAATAATAGAAATCTCATTGCCTCTAGTAAGCCAACAGCTGGGACTCCTATTGGGGTAGAACCGAATGTTGTAGCTGCTGCCTCTGCTGCCCTTGGTGCAATCATGAATGGCAATAATGAACATGGAAATATGATTGACCATGAATTGCTGATTCAGATTCTGAGCAACCCAAAGATGATTGAGAAATTGGTTACAGATCCACAGGCAGTGACTAGATCACCATCCATGACTTCATCAGATCCATTCCCGCTTCACATTAATAACATAGAAAGTATTGCACCTTTGTCAACCGCCCCATCAAGTGGACATTTCTATCCTCAGGCAAATATGGGTGGAATGGGACATCTTTCTGATCAATCTTTGTTATCAAGCATTCCAGTTTCCTCCTCGCCTTCTGTCGGACCACCACCAGCAAAGGATATCAACTATTATAAAAGCTTGATTCAACAACATGGAGGGGATAGGCACGACTCCTTCCCACCATTTGGCAATCGTCCTAGCCACCATTCTGCAAACCAAGAATCCTTTAATGGTTACAAATCAAGGGATTCAAAGCCTAAGATTATGAAGCCTTGCATATACTTCAATAGTTCAAGGGGATGCCGCCATGGAGCAAATTGTTCATTCCAACATGATGCATCTTTCCAACAGCAGGGTAGTCGTGTGCCCGAGGTCCAGAGTGCTAAGAGAATGAAAGTTGATAGGGAGATAAGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

353

Amino Acids

38.26

Weight (kDa)

5.95

Isoelectric Point (pI)

62.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19860 AT1G19860
fragaria_vesca	FvH4_2g38810 FvH4_2g38810 FvH4_2g38810 FvH4_2g38810
malus_domestica	MD08G1015700.v1.1 MD15G1014600.v1.1
prunus_persica	Prupe.1G368900_v2.0.a1
pyrus_communis	pycom08g01370 pycom15g01270
rosa_chinensis	RchiOBHm_Chr6g0302461
rosa_laevigata	RLG00000011169
rosa_multiflora	Rmu_co8159708.1_g000001 Rmu_co8376349.1_g000001 Rmu_sc0011021.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165750
rosa_rugosa	Rorug06G0314400
rosa_samantha	Rh6AG427500 Rh6BG475200 Rh6CG439600 Rh6DG426600
rosa_wichuraiana	Rw6G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	774
AccB1I	GGYRCC	1 cut(s)	262
AccB7I	CCANNNNNTGG	3 cut(s)	380, 644, 827
AciI	CCGC	3 cut(s)	590, 633, 946
AclWI	GGATC	2 cut(s)	533, 575
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	4 cut(s)	30, 108, 189, 244
AfiI	CCNNNNNNNGG	5 cut(s)	380, 644, 740, 827, 994
AgsI	TTSAA	6 cut(s)	221, 271, 788, 894, 928, 936
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	4 cut(s)	320, 380, 416, 780
AluI	AGCT	4 cut(s)	320, 380, 416, 780
AlwI	GGATC	2 cut(s)	533, 575
AlwNI	CAGNNNCTG	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	1010
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	3 cut(s)	416, 419, 428
ApoI	RAATTY	1 cut(s)	254
AseI	ATTAAT	1 cut(s)	600
AspS9I	GGNCC	2 cut(s)	743, 1015
AsuHPI	GGTGA	1 cut(s)	552
AvaI	CYCGRG	1 cut(s)	1010
AvaII	GGWCC	2 cut(s)	743, 1015
AxyI	CCTNAGG	1 cut(s)	660
BaeGI	GKGCMC	1 cut(s)	1011
BanI	GGYRCC	1 cut(s)	262
BbvI	GCAGC	3 cut(s)	403, 406, 415
BccI	CCATC	3 cut(s)	139, 571, 646
BcgI	CGANNNNNNTGC	2 cut(s)	983, 1017
BciT130I	CCWGG	1 cut(s)	43
BclI	TGATCA	1 cut(s)	694
BfaI	CTAG	4 cut(s)	174, 366, 555, 840
BisI	GCNGC	4 cut(s)	417, 420, 429, 946
BlsI	GCNGC	4 cut(s)	418, 421, 430, 947
BmcAI	AGTACT	1 cut(s)	108
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	2 cut(s)	743, 1015
BmeT110I	CYCGRG	1 cut(s)	1010
BmgT120I	GGNCC	2 cut(s)	743, 1015
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	3 cut(s)	932, 967, 989
BpmI	CTGGAG	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	562
BsaJI	CCNNGG	3 cut(s)	433, 949, 1011
Bsc4I	CCNNNNNNNGG	5 cut(s)	380, 644, 740, 827, 994
Bse1I	ACTGG	2 cut(s)	114, 719
Bse21I	CCTNAGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	3 cut(s)	433, 949, 1011
BseGI	GGATG	2 cut(s)	563, 947
BseJI	GATNNNNATC	1 cut(s)	562
BseLI	CCNNNNNNNGG	5 cut(s)	380, 644, 740, 827, 994
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	2 cut(s)	494, 674
BseNI	ACTGG	2 cut(s)	114, 719
BseRI	GAGGAG	2 cut(s)	182, 718
BseSI	GKGCMC	1 cut(s)	1011
BseXI	GCAGC	3 cut(s)	403, 406, 415
BseYI	CCCAGC	2 cut(s)	56, 380
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	1010
BslFI	GGGAC	2 cut(s)	397, 696
BslI	CCNNNNNNNGG	5 cut(s)	380, 644, 740, 827, 994
BsmFI	GGGAC	2 cut(s)	397, 696
BsmI	GAATGC	1 cut(s)	714
BsnI	GGCC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	1010
Bsp1286I	GDGCHC	1 cut(s)	1011
Bsp1407I	TGTACA	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	538, 557, 580, 694
Bsp19I	CCATGG	1 cut(s)	949
BspACI	CCGC	3 cut(s)	590, 633, 946
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	495, 673
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	533, 575
BspT107I	GGYRCC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	357
BsrGI	TGTACA	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	114, 719
BssECI	CCNNGG	3 cut(s)	433, 949, 1011
BssMI	GATC	4 cut(s)	538, 557, 580, 694
BssT1I	CCWWGG	2 cut(s)	433, 949
Bst2UI	CCWGG	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	216
BstAUI	TGTACA	1 cut(s)	187
BstDEI	CTNAG	4 cut(s)	503, 660, 900, 1026
BstDSI	CCRYGG	1 cut(s)	949
BstF5I	GGATG	2 cut(s)	563, 947
BstKTI	GATC	4 cut(s)	541, 560, 583, 697
BstMBI	GATC	4 cut(s)	538, 557, 580, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 428, 437
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BstSLI	GKGCMC	1 cut(s)	1011
BstV1I	GCAGC	3 cut(s)	403, 406, 415
BstX2I	RGATCY	2 cut(s)	538, 580
BstYI	RGATCY	2 cut(s)	538, 580
Bsu36I	CCTNAGG	1 cut(s)	660
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	949
BtsCI	GGATG	2 cut(s)	563, 947
BtsI	GCAGTG	2 cut(s)	340, 555
BtsIMutI	CAGTG	2 cut(s)	340, 555
CaiI	CAGNNNCTG	1 cut(s)	502
CciI	TCATGA	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	743, 1015
Csp6I	GTAC	4 cut(s)	29, 107, 188, 243
CviAII	CATG	9 cut(s)	259, 308, 445, 464, 482, 568, 794, 950, 974
CviJI	RGCY	9 cut(s)	41, 320, 373, 380, 416, 780, 843, 898, 913
CviKI_1	RGCY	9 cut(s)	41, 320, 373, 380, 416, 780, 843, 898, 913
CviQI	GTAC	4 cut(s)	29, 107, 188, 243
DdeI	CTNAG	4 cut(s)	503, 660, 900, 1026
DpnI	GATC	4 cut(s)	540, 559, 582, 696
DpnII	GATC	4 cut(s)	538, 557, 580, 694
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	433, 949
Eco32I	GATATC	1 cut(s)	763
Eco47I	GGWCC	2 cut(s)	743, 1015
Eco81I	CCTNAGG	1 cut(s)	660
Eco88I	CYCGRG	1 cut(s)	1010
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	41
EcoRV	GATATC	1 cut(s)	763
EcoT14I	CCWWGG	2 cut(s)	433, 949
EcoT22I	ATGCAT	3 cut(s)	6, 309, 982
ErhI	CCWWGG	2 cut(s)	433, 949
FaeI	CATG	9 cut(s)	262, 311, 448, 467, 485, 571, 797, 953, 977
FaqI	GGGAC	2 cut(s)	397, 696
FatI	CATG	9 cut(s)	258, 307, 444, 463, 481, 567, 793, 949, 973
FauI	CCCGC	1 cut(s)	597
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	4 cut(s)	417, 420, 429, 946
FokI	GGATG	2 cut(s)	550, 954
Fsp4HI	GCNGC	4 cut(s)	417, 420, 429, 946
FspBI	CTAG	4 cut(s)	174, 366, 555, 840
GluI	GCNGC	4 cut(s)	417, 420, 429, 946
GsaI	CCCAGC	2 cut(s)	60, 384
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	41
Hin1II	CATG	9 cut(s)	262, 311, 448, 467, 485, 571, 797, 953, 977
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HindIII	AAGCTT	1 cut(s)	778
HinfI	GANTC	9 cut(s)	170, 274, 385, 493, 499, 784, 812, 863, 890
HphI	GGTGA	1 cut(s)	552
Hpy166II	GTNNAC	3 cut(s)	287, 630, 647
Hpy188I	TCNGA	7 cut(s)	93, 253, 498, 504, 580, 694, 743
Hpy188III	TCNNGA	2 cut(s)	445, 1018
Hpy8I	GTNNAC	3 cut(s)	287, 630, 647
HpyAV	CCTTC	2 cut(s)	744, 826
HpyCH4V	TGCA	8 cut(s)	4, 307, 338, 440, 620, 854, 918, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 428, 437
HpyF3I	CTNAG	4 cut(s)	503, 660, 900, 1026
Hsp92II	CATG	9 cut(s)	262, 311, 448, 467, 485, 571, 797, 953, 977
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	4 cut(s)	538, 557, 580, 694
LmnI	GCTCC	1 cut(s)	953
Lsp1109I	GCAGC	3 cut(s)	403, 406, 415
LweI	GCATC	3 cut(s)	932, 967, 989
MaeI	CTAG	4 cut(s)	174, 366, 555, 840
MaeIII	GTNAC	5 cut(s)	99, 176, 532, 550, 875
MalI	GATC	4 cut(s)	540, 559, 582, 696
MboI	GATC	4 cut(s)	538, 557, 580, 694
MboII	GAAGA	4 cut(s)	74, 233, 239, 283
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	2 cut(s)	538, 580
MhlI	GDGCHC	1 cut(s)	1011
MluCI	AATT	6 cut(s)	13, 237, 254, 485, 527, 958
MlyI	GAGTC	3 cut(s)	179, 379, 806
MmeI	TCCRAC	3 cut(s)	721, 994, 1012
Mph1103I	ATGCAT	3 cut(s)	6, 309, 982
MseI	TTAA	4 cut(s)	342, 600, 870, 1060
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	3 cut(s)	425, 428, 437
NcoI	CCATGG	1 cut(s)	949
NdeII	GATC	4 cut(s)	538, 557, 580, 694
NlaIII	CATG	9 cut(s)	262, 311, 448, 467, 485, 571, 797, 953, 977
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	2 cut(s)	176, 550
NsiI	ATGCAT	3 cut(s)	6, 309, 982
PagI	TCATGA	1 cut(s)	444
PctI	GAATGC	1 cut(s)	714
PfeI	GAWTC	6 cut(s)	274, 493, 499, 784, 863, 890
PflMI	CCANNNNNTGG	3 cut(s)	380, 644, 827
PkrI	GCNGC	4 cut(s)	418, 421, 430, 947
PleI	GAGTC	3 cut(s)	178, 379, 806
PpsI	GAGTC	3 cut(s)	178, 379, 806
PshBI	ATTAAT	1 cut(s)	600
PsiI	TTATAA	1 cut(s)	774
Psp6I	CCWGG	1 cut(s)	41
PspFI	CCCAGC	2 cut(s)	56, 380
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	2 cut(s)	743, 1015
PstNI	CAGNNNCTG	1 cut(s)	502
PsuI	RGATCY	2 cut(s)	538, 580
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	4 cut(s)	30, 108, 189, 244
RsaNI	GTAC	4 cut(s)	29, 107, 188, 243
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	4 cut(s)	342, 600, 870, 1060
SatI	GCNGC	4 cut(s)	417, 420, 429, 946
Sau3AI	GATC	4 cut(s)	538, 557, 580, 694
Sau96I	GGNCC	2 cut(s)	743, 1015
ScaI	AGTACT	1 cut(s)	108
SchI	GAGTC	3 cut(s)	179, 379, 806
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	1011
SfaNI	GCATC	3 cut(s)	932, 967, 989
SinI	GGWCC	2 cut(s)	743, 1015
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	6 cut(s)	13, 237, 254, 485, 527, 958
SsiI	CCGC	3 cut(s)	590, 633, 946
SspMI	CTAG	4 cut(s)	174, 366, 555, 840
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	2 cut(s)	433, 949
TaqI	TCGA	1 cut(s)	200
TasI	AATT	6 cut(s)	13, 237, 254, 485, 527, 958
TatI	WGTACW	3 cut(s)	28, 106, 187
TauI	GCSGC	1 cut(s)	948
TfiI	GAWTC	6 cut(s)	274, 493, 499, 784, 863, 890
Tru1I	TTAA	4 cut(s)	342, 600, 870, 1060
Tru9I	TTAA	4 cut(s)	342, 600, 870, 1060
TscAI	CASTG	2 cut(s)	340, 555
TseFI	GTSAC	2 cut(s)	176, 550
TseI	GCWGC	3 cut(s)	416, 419, 428
Tsp45I	GTSAC	2 cut(s)	176, 550
TspDTI	ATGAA	8 cut(s)	247, 461, 474, 498, 564, 923, 954, 1049
TspRI	CASTG	2 cut(s)	340, 555
Van91I	CCANNNNNTGG	3 cut(s)	380, 644, 827
VpaK11BI	GGWCC	2 cut(s)	743, 1015
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	4 cut(s)	174, 366, 555, 840
ZrmI	AGTACT	1 cut(s)	108
Zsp2I	ATGCAT	3 cut(s)	6, 309, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.