MD08G1015700.v1.1

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
1228611 .. 1233377
4767 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1015700.v1.1.491

Sequence Viewer

Length: 1290 bp
ATGTTTAACATGCGGGGATTGAAGAATTCGAAAAGGGTTTCTTGGGCTTCAGATGTTAACCTTTGTCAGGTAAAGCTGTTTCTCTTGGAGGAATCTCCTTCACAGGTTGGGCTGAGCGCTCAAGATCACCTCCAAGCGAAGCCATCTTGGCCGTCACATTCATCTGGAACAGGCTCAGATGACACTCTACCCCCTGGGTTTGAGGGACCGCATCCAGCGAATCAGCCTCAGATTGACTTGTCTCAAATTCTTCTAATCAAATGGAGATGCCCTCCTAAGGTTGTGCTGAACTTCGCTTGGCAAGTGGTTTCTGGGGAAGAAAGCAAAGAGGTGGAGATTCAAAATCAGAGAGAGATAAGAGTACTGGAAGCGGTTTATCCACGGCCATCTGCCATTCCTTTAAACCCCTCTGTTTTGGCAGATGTTGAAGACTCTAGTCATACTGGTGGGCAACCTCTTATCATACCTATTACCCCCATTGAAGACGAAGATGCCAGTGTTGAAACATCATCTGAATCCATGGTACCGTTTAACAATTCCACAAGCTCACAGCCCTTTCTATCAGTTCAGGGAATATTGGCTCCATCTCAAAACAATATTCCTAACAATGGAAACCACATTAAGCCTGCAACACTTGGAATGCCTGTTGCAGCAGAACCTGATGTTGTAGCTGCTGCCCTTGGTGCAATTGTGAATAGCAACGAGCACGGAAATATGATTGACCATGAATTGCTGATTAAGATTCTCAGCAACCCGAAAATGATTGAGCAATTGGTTACAGATCCACAACCAATGACAAGGCCACCTCCAATGGGCATATCAGATCCATCTCACATGATCAGGACAGAAATCAACACACCTTCATCAAGCGGACATTTCTATCCTCAACCAAATATGGGACCTTTTCCTGATGCACGACCACCTCCGCCTGCAGGAATTCCAGTTCATTCTTCGCCTTCTGTTGGACCACCTCCACCAGCAAAGGACATCAACTATTATAAAAGCTTGATTCAACAACATGGAGGAGACCGGCATGACAACTTTCCACCATTTGGTAATCGACACAGTGACCATTCAGCGGTAAACCAAGAATCCAATAATAACTACAAATCGAGAGATTCAAAGCCCAAGAACATGAAGCCTTGCATATTCTTCAACAGTTCAAGGGGATGCAACAAAGGAGCAAATTGCACGTTCCAGCATGATGCATCGTCCCAGCCAAGAGGTAGTAGTGTGTCGGAGGTGCACAAGGCAAAGAGAATGAAACTGGATAGGGAGATCAGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

430

Amino Acids

46.74

Weight (kDa)

6.14

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 999
Acc65I GGTACC 1 cut(s) 523
AccB1I GGYRCC 1 cut(s) 523
AccB7I CCANNNNNTGG 1 cut(s) 1052
AciI CCGC 6 cut(s) 13, 209, 371, 870, 926, 1079
AclWI GGATC 2 cut(s) 776, 818
AcoI YGGCCR 2 cut(s) 149, 383
AcsI RAATTY 3 cut(s) 25, 246, 936
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 2 cut(s) 363, 525
AfeI AGCGCT 1 cut(s) 118
AfiI CCNNNNNNNGG 9 cut(s) 67, 277, 608, 812, 896, 932, 962, 1052, 1078
AgsI TTSAA 9 cut(s) 22, 341, 428, 482, 503, 1013, 1122, 1156, 1164
AjnI CCWGG 1 cut(s) 193
AloI GAACNNNNNNTCC 2 cut(s) 927, 959
AluBI AGCT 4 cut(s) 76, 546, 671, 1005
AluI AGCT 4 cut(s) 76, 546, 671, 1005
Alw21I GWGCWC 2 cut(s) 708, 1248
Alw26I GTCTC 2 cut(s) 246, 1020
Alw44I GTGCAC 1 cut(s) 1244
AlwI GGATC 2 cut(s) 776, 818
AlwNI CAGNNNCTG 1 cut(s) 659
Aor51HI AGCGCT 1 cut(s) 118
AoxI GGCC 3 cut(s) 149, 383, 800
ApaLI GTGCAC 1 cut(s) 1244
ApeKI GCWGC 3 cut(s) 650, 671, 674
ApoI RAATTY 3 cut(s) 25, 246, 936
Asp718I GGTACC 1 cut(s) 523
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 3 cut(s) 206, 899, 965
AsuHPI GGTGA 1 cut(s) 119
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 3 cut(s) 206, 899, 965
AxyI CCTNAGG 1 cut(s) 276
BaeGI GKGCMC 1 cut(s) 1248
BanI GGYRCC 1 cut(s) 523
BbsI GAAGAC 2 cut(s) 435, 489
Bbv12I GWGCWC 2 cut(s) 708, 1248
BbvI GCAGC 3 cut(s) 658, 661, 662
BccI CCATC 4 cut(s) 151, 394, 592, 835
BceAI ACGGC 2 cut(s) 136, 398
BciT130I CCWGG 1 cut(s) 195
BclI TGATCA 1 cut(s) 837
BcoDI GTCTC 2 cut(s) 246, 1020
BfaI CTAG 1 cut(s) 435
BfmI CTRYAG 1 cut(s) 930
BfoI RGCGCY 1 cut(s) 120
BglI GCCNNNNNGGC 1 cut(s) 148
BisI GCNGC 3 cut(s) 651, 672, 675
BlpI GCTNAGC 1 cut(s) 113
BlsI GCNGC 3 cut(s) 652, 673, 676
BmcAI AGTACT 1 cut(s) 363
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 3 cut(s) 206, 899, 965
BmgT120I GGNCC 3 cut(s) 206, 899, 965
BmiI GGNNCC 4 cut(s) 207, 525, 582, 900
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 7 cut(s) 220, 257, 481, 901, 1160, 1195, 1217
BoxI GACNNNNGTC 1 cut(s) 435
BpiI GAAGAC 2 cut(s) 435, 489
BplI GAGNNNNNCTC 2 cut(s) 256, 288
Bpu1102I GCTNAGC 1 cut(s) 113
Bpu14I TTCGAA 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 1020
BsaJI CCNNGG 5 cut(s) 193, 194, 380, 519, 679
Bsc4I CCNNNNNNNGG 9 cut(s) 67, 277, 608, 812, 896, 932, 962, 1052, 1078
Bse118I RCCGGY 1 cut(s) 1029
Bse1I ACTGG 5 cut(s) 369, 448, 495, 941, 1272
Bse21I CCTNAGG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 5 cut(s) 193, 194, 380, 519, 679
BseGI GGATG 2 cut(s) 211, 1175
BseLI CCNNNNNNNGG 9 cut(s) 67, 277, 608, 812, 896, 932, 962, 1052, 1078
BseMII CTCAG 4 cut(s) 104, 189, 242, 760
BseNI ACTGG 5 cut(s) 369, 448, 495, 941, 1272
BseRI GAGGAG 1 cut(s) 1038
BseSI GKGCMC 1 cut(s) 1248
BseXI GCAGC 3 cut(s) 658, 661, 662
BseYI CCCAGC 1 cut(s) 1215
BshFI GGCC 3 cut(s) 151, 385, 802
BshNI GGYRCC 1 cut(s) 523
BsiHKAI GWGCWC 2 cut(s) 708, 1248
BsiSI CCGG 1 cut(s) 1030
BslFI GGGAC 3 cut(s) 219, 912, 1198
BslI CCNNNNNNNGG 9 cut(s) 67, 277, 608, 812, 896, 932, 962, 1052, 1078
BsmAI GTCTC 2 cut(s) 246, 1020
BsmFI GGGAC 3 cut(s) 219, 912, 1198
BsmI GAATGC 1 cut(s) 645
BsnI GGCC 3 cut(s) 151, 385, 802
Bso31I GGTCTC 1 cut(s) 1020
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 708, 1248
Bsp143I GATC 5 cut(s) 124, 781, 823, 837, 1278
Bsp1720I GCTNAGC 1 cut(s) 113
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 6 cut(s) 13, 209, 371, 870, 926, 1079
BspANI GGCC 3 cut(s) 151, 385, 802
BspCNI CTCAG 4 cut(s) 105, 188, 241, 759
BspLI GGNNCC 4 cut(s) 207, 525, 582, 900
BspMAI CTGCAG 1 cut(s) 934
BspPI GGATC 2 cut(s) 776, 818
BspT104I TTCGAA 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 523
BspTNI GGTCTC 1 cut(s) 1020
BsrFI RCCGGY 1 cut(s) 1029
BsrI ACTGG 5 cut(s) 369, 448, 495, 941, 1272
BssAI RCCGGY 1 cut(s) 1029
BssECI CCNNGG 5 cut(s) 193, 194, 380, 519, 679
BssMI GATC 5 cut(s) 124, 781, 823, 837, 1278
BssT1I CCWWGG 2 cut(s) 519, 679
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 3 cut(s) 528, 1067, 1160
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 627, 930
BstDEI CTNAG 5 cut(s) 113, 175, 228, 276, 746
BstDSI CCRYGG 2 cut(s) 380, 519
BstENI CCTNNNNNAGG 1 cut(s) 65
BstF5I GGATG 2 cut(s) 211, 1175
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 5 cut(s) 127, 784, 826, 840, 1281
BstMAI GTCTC 2 cut(s) 246, 1020
BstMBI GATC 5 cut(s) 124, 781, 823, 837, 1278
BstMWI GCNNNNNNNGC 2 cut(s) 148, 683
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 13
BstPAI GACNNNNGTC 1 cut(s) 435
BstSCI CCNGG 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 930
BstSLI GKGCMC 1 cut(s) 1248
BstV1I GCAGC 3 cut(s) 658, 661, 662
BstV2I GAAGAC 2 cut(s) 435, 489
BstX2I RGATCY 2 cut(s) 781, 823
BstYI RGATCY 2 cut(s) 781, 823
Bsu36I CCTNAGG 1 cut(s) 276
BsuRI GGCC 3 cut(s) 151, 385, 802
BtgI CCRYGG 2 cut(s) 380, 519
BtsCI GGATG 2 cut(s) 211, 1175
BtsIMutI CAGTG 2 cut(s) 502, 1072
Cac8I GCNNGC 2 cut(s) 627, 930
CaiI CAGNNNCTG 1 cut(s) 659
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 1029
Cfr13I GGNCC 3 cut(s) 206, 899, 965
Csp6I GTAC 2 cut(s) 362, 524
CviAII CATG 8 cut(s) 10, 520, 725, 835, 1019, 1034, 1135, 1202
CviQI GTAC 2 cut(s) 362, 524
DdeI CTNAG 5 cut(s) 113, 175, 228, 276, 746
DpnI GATC 5 cut(s) 126, 783, 825, 839, 1280
DpnII GATC 5 cut(s) 124, 781, 823, 837, 1278
DraI TTTAAA 1 cut(s) 402
EaeI YGGCCR 2 cut(s) 149, 383
EciI GGCGGA 1 cut(s) 915
Eco130I CCWWGG 2 cut(s) 519, 679
Eco31I GGTCTC 1 cut(s) 1020
Eco47I GGWCC 3 cut(s) 206, 899, 965
Eco47III AGCGCT 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 33
Eco81I CCTNAGG 1 cut(s) 276
EcoNI CCTNNNNNAGG 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 899
EcoRI GAATTC 2 cut(s) 25, 936
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 519, 679
EcoT22I ATGCAT 1 cut(s) 1210
ErhI CCWWGG 2 cut(s) 519, 679
FaeI CATG 8 cut(s) 13, 523, 728, 838, 1022, 1037, 1138, 1205
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FaqI GGGAC 3 cut(s) 219, 912, 1198
FatI CATG 8 cut(s) 9, 519, 724, 834, 1018, 1033, 1134, 1201
FauI CCCGC 1 cut(s) 6
FbaI TGATCA 1 cut(s) 837
Fnu4HI GCNGC 3 cut(s) 651, 672, 675
FokI GGATG 2 cut(s) 198, 1182
Fsp4HI GCNGC 3 cut(s) 651, 672, 675
FspBI CTAG 1 cut(s) 435
GlaI GCGC 1 cut(s) 118
GluI GCNGC 3 cut(s) 651, 672, 675
GsaI CCCAGC 1 cut(s) 1219
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 3 cut(s) 151, 385, 802
HapII CCGG 1 cut(s) 1030
HhaI GCGC 1 cut(s) 119
Hin1II CATG 8 cut(s) 13, 523, 728, 838, 1022, 1037, 1138, 1205
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 1003
HinfI GANTC 9 cut(s) 92, 220, 337, 431, 515, 742, 1009, 1091, 1118
HpaI GTTAAC 1 cut(s) 58
HpaII CCGG 1 cut(s) 1030
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 3 cut(s) 58, 1084, 1246
Hpy188I TCNGA 7 cut(s) 52, 178, 231, 348, 514, 823, 1240
Hpy188III TCNNGA 5 cut(s) 122, 165, 841, 908, 1113
Hpy8I GTNNAC 3 cut(s) 58, 1084, 1246
HpyAV CCTTC 3 cut(s) 108, 870, 966
HpyCH4III ACNGT 3 cut(s) 528, 1067, 1160
HpyCH4IV ACGT 1 cut(s) 1193
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 683
HpyF3I CTNAG 5 cut(s) 113, 175, 228, 276, 746
HpySE526I ACGT 1 cut(s) 1193
Hsp92II CATG 8 cut(s) 13, 523, 728, 838, 1022, 1037, 1138, 1205
HspAI GCGC 1 cut(s) 117
KpnI GGTACC 1 cut(s) 527
Ksp22I TGATCA 1 cut(s) 837
KspAI GTTAAC 1 cut(s) 58
Kzo9I GATC 5 cut(s) 124, 781, 823, 837, 1278
LmnI GCTCC 2 cut(s) 586, 1181
Lsp1109I GCAGC 3 cut(s) 658, 661, 662
LweI GCATC 7 cut(s) 220, 257, 481, 901, 1160, 1195, 1217
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 1193
MaeIII GTNAC 3 cut(s) 153, 775, 1067
MalI GATC 5 cut(s) 126, 783, 825, 839, 1280
MboI GATC 5 cut(s) 124, 781, 823, 837, 1278
MboII GAAGA 8 cut(s) 34, 242, 329, 440, 494, 500, 942, 1144
MfeI CAATTG 2 cut(s) 687, 770
MflI RGATCY 2 cut(s) 781, 823
MhlI GDGCHC 2 cut(s) 708, 1248
MluCI AATT 8 cut(s) 25, 246, 535, 687, 728, 770, 936, 1186
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 2 cut(s) 943, 1218
Mph1103I ATGCAT 1 cut(s) 1210
MseI TTAA 7 cut(s) 6, 57, 401, 531, 621, 738, 1288
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 1079
MspI CCGG 1 cut(s) 1030
MspR9I CCNGG 1 cut(s) 195
MunI CAATTG 2 cut(s) 687, 770
Mva1269I GAATGC 1 cut(s) 645
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 148, 683
NcoI CCATGG 1 cut(s) 519
NdeII GATC 5 cut(s) 124, 781, 823, 837, 1278
NlaIII CATG 8 cut(s) 13, 523, 728, 838, 1022, 1037, 1138, 1205
NlaIV GGNNCC 4 cut(s) 207, 525, 582, 900
NmuCI GTSAC 2 cut(s) 153, 1067
NsiI ATGCAT 1 cut(s) 1210
NspI RCATGY 1 cut(s) 13
NspV TTCGAA 1 cut(s) 29
PasI CCCWGGG 1 cut(s) 194
PctI GAATGC 1 cut(s) 645
PfeI GAWTC 8 cut(s) 92, 220, 337, 515, 742, 1009, 1091, 1118
PflMI CCANNNNNTGG 1 cut(s) 1052
PkrI GCNGC 3 cut(s) 652, 673, 676
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PpuMI RGGWCCY 1 cut(s) 899
PshAI GACNNNNGTC 1 cut(s) 435
PsiI TTATAA 1 cut(s) 999
Psp5II RGGWCCY 1 cut(s) 899
Psp6I CCWGG 1 cut(s) 193
PspFI CCCAGC 1 cut(s) 1215
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 4 cut(s) 207, 525, 582, 900
PspPI GGNCC 3 cut(s) 206, 899, 965
PspPPI RGGWCCY 1 cut(s) 899
PstI CTGCAG 1 cut(s) 934
PstNI CAGNNNCTG 1 cut(s) 659
PsuI RGATCY 2 cut(s) 781, 823
RsaI GTAC 2 cut(s) 363, 525
RsaNI GTAC 2 cut(s) 362, 524
RseI CAYNNNNRTG 1 cut(s) 444
SaqAI TTAA 7 cut(s) 6, 57, 401, 531, 621, 738, 1288
SatI GCNGC 3 cut(s) 651, 672, 675
Sau3AI GATC 5 cut(s) 124, 781, 823, 837, 1278
Sau96I GGNCC 3 cut(s) 206, 899, 965
SbfI CCTGCAGG 1 cut(s) 934
ScaI AGTACT 1 cut(s) 363
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 195
SdaI CCTGCAGG 1 cut(s) 934
SduI GDGCHC 2 cut(s) 708, 1248
SfaNI GCATC 7 cut(s) 220, 257, 481, 901, 1160, 1195, 1217
SfcI CTRYAG 1 cut(s) 930
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 3 cut(s) 206, 899, 965
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse8387I CCTGCAGG 1 cut(s) 934
Sse9I AATT 8 cut(s) 25, 246, 535, 687, 728, 770, 936, 1186
SsiI CCGC 6 cut(s) 13, 209, 371, 870, 926, 1079
SspI AATATT 2 cut(s) 576, 598
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 2 cut(s) 519, 679
TaaI ACNGT 3 cut(s) 528, 1067, 1160
TaiI ACGT 1 cut(s) 1196
TaqI TCGA 3 cut(s) 29, 1060, 1112
TasI AATT 8 cut(s) 25, 246, 535, 687, 728, 770, 936, 1186
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 8 cut(s) 92, 220, 337, 515, 742, 1009, 1091, 1118
Tru1I TTAA 7 cut(s) 6, 57, 401, 531, 621, 738, 1288
Tru9I TTAA 7 cut(s) 6, 57, 401, 531, 621, 738, 1288
TscAI CASTG 2 cut(s) 502, 1072
TseFI GTSAC 2 cut(s) 153, 1067
TseI GCWGC 3 cut(s) 650, 671, 674
Tsp45I GTSAC 2 cut(s) 153, 1067
TspDTI ATGAA 6 cut(s) 150, 741, 852, 935, 1151, 1277
TspGWI ACGGA 1 cut(s) 723
TspRI CASTG 2 cut(s) 502, 1072
Van91I CCANNNNNTGG 1 cut(s) 1052
VneI GTGCAC 1 cut(s) 1244
VpaK11BI GGWCC 3 cut(s) 206, 899, 965
XagI CCTNNNNNAGG 1 cut(s) 65
XapI RAATTY 3 cut(s) 25, 246, 936
XceI RCATGY 1 cut(s) 13
XspI CTAG 1 cut(s) 435
ZrmI AGTACT 1 cut(s) 363
Zsp2I ATGCAT 1 cut(s) 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.