Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008745

Physical Location & Seq

Genomic Coordinates Forward (+)

61952395 .. 61957449

Gene Structure 5055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG439600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCATATTACTAATTTTTCACAGGTTGTACTGAACTTGGCTTGGCAAGTTGTTGCTGGGGAAGAAAGCAAAGAGGTAGAGAGTGAAAATCAGAGAGAGTTACGAGTACTGGAAGCAGTTTATCCACGACCATCTGCTATTCCTCTAAACCCCTTTGTAGATGTGGAGGAGTCTAGTCACAATGATGTACAACCTCTTTCGATACCTATTACTCCTATTGAAGAGGAAGATGTAGCAATTGGTACATCATCTGAATTCATGGTGCCATTTAAGATTCCCACAAGTTCACAATCCTTCCTATCAATGCATGGAACTCCAGCTCAATCTCAAAGCAGTGCAGCTAATAATAGAAATCTCATTGCCTCTAGTAAGCCAACAGCTGGGACTCCTATTGGGGTAGAACCGAATGTTGTAGCTGCTGCCTCTGCTGCCCTTGGTGCAATCATGAATGGCAATAATGAACATGGAAATATGATTGACCATGAATTGCTGATTCAGATTTTGAGCAACCCAAAGATGATTGAGAAATTGGTTACAGATCCACAGGCAGTGACTAGATCACCATCCATGACTTCATCAGATCCATTCCCGCTTCACATTAATAACACAGAAAGTATTGCACCTTTGTCAACCGCTCCATCAAGTGGACATTTCTATCCTCAGGCAAATATGGGTGGAATGGGACATCTTTCTGATCAATCTTTGTTATCAAGCATTCCAGTTTCCTCCTCGCCTTCTGTCGGACCACCACCAGCAAAGGATATCAACTATTATAAAAGCTTGATTCAACAACATGGAGGGGATAGGCACGACTCCTTCCCACCATTTGGCAATCGTCCTAGCCACCATTCGGCAAACCAAGAATCCTATAATGGTTACAAATCAAGGGATTCAAAGCCTAAGATTATGAAGCCTTGCATATACTTCAATAGTTCAAGGGGGTGCCGCCATGGAGCAAATTGTTCATTCCAACATGATGCATCTTTCCAACAGCAGGGTAGTCGTGTGCCCGAGGTCCAGAATGCTAAGAGAATGAAAGTTGATAGGGAGATAAGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

353

Amino Acids

38.28

Weight (kDa)

5.95

Isoelectric Point (pI)

59.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19860 AT1G19860
fragaria_vesca	FvH4_2g38810 FvH4_2g38810 FvH4_2g38810 FvH4_2g38810
malus_domestica	MD08G1015700.v1.1 MD15G1014600.v1.1
prunus_persica	Prupe.1G368900_v2.0.a1
pyrus_communis	pycom08g01370 pycom15g01270
rosa_chinensis	RchiOBHm_Chr6g0302461
rosa_laevigata	RLG00000011169
rosa_multiflora	Rmu_co8159708.1_g000001 Rmu_co8376349.1_g000001 Rmu_sc0011021.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165750
rosa_rugosa	Rorug06G0314400
rosa_samantha	Rh6AG427500 Rh6BG475200 Rh6CG439600 Rh6DG426600
rosa_wichuraiana	Rw6G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	774
AccB1I	GGYRCC	2 cut(s)	262, 942
AccB7I	CCANNNNNTGG	3 cut(s)	380, 644, 827
AccBSI	CCGCTC	1 cut(s)	635
AciI	CCGC	3 cut(s)	590, 633, 946
AclWI	GGATC	2 cut(s)	533, 575
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	4 cut(s)	30, 108, 189, 244
AfiI	CCNNNNNNNGG	6 cut(s)	380, 644, 740, 827, 850, 994
AgsI	TTSAA	5 cut(s)	221, 788, 894, 928, 936
AluBI	AGCT	5 cut(s)	320, 341, 380, 416, 780
AluI	AGCT	5 cut(s)	320, 341, 380, 416, 780
AlwI	GGATC	2 cut(s)	533, 575
Ama87I	CYCGRG	1 cut(s)	1010
ApeKI	GCWGC	4 cut(s)	338, 416, 419, 428
ApoI	RAATTY	1 cut(s)	254
AseI	ATTAAT	1 cut(s)	600
AspS9I	GGNCC	2 cut(s)	743, 1015
AsuHPI	GGTGA	1 cut(s)	552
AvaI	CYCGRG	1 cut(s)	1010
AvaII	GGWCC	2 cut(s)	743, 1015
AxyI	CCTNAGG	1 cut(s)	660
BaeGI	GKGCMC	1 cut(s)	1011
BanI	GGYRCC	2 cut(s)	262, 942
BbvI	GCAGC	4 cut(s)	350, 403, 406, 415
BccI	CCATC	3 cut(s)	139, 571, 646
BcgI	CGANNNNNNTGC	2 cut(s)	983, 1017
BclI	TGATCA	1 cut(s)	694
BfaI	CTAG	4 cut(s)	174, 366, 555, 840
BisI	GCNGC	5 cut(s)	339, 417, 420, 429, 946
BlsI	GCNGC	5 cut(s)	340, 418, 421, 430, 947
BmcAI	AGTACT	1 cut(s)	108
Bme18I	GGWCC	2 cut(s)	743, 1015
BmeT110I	CYCGRG	1 cut(s)	1010
BmgT120I	GGNCC	2 cut(s)	743, 1015
BmiI	GGNNCC	2 cut(s)	264, 944
BmsI	GCATC	2 cut(s)	967, 989
BpmI	CTGGAG	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	562
BsaJI	CCNNGG	3 cut(s)	433, 949, 1011
Bsc4I	CCNNNNNNNGG	6 cut(s)	380, 644, 740, 827, 850, 994
Bse1I	ACTGG	2 cut(s)	114, 719
Bse21I	CCTNAGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	562
BseDI	CCNNGG	3 cut(s)	433, 949, 1011
BseGI	GGATG	1 cut(s)	563
BseJI	GATNNNNATC	1 cut(s)	562
BseLI	CCNNNNNNNGG	6 cut(s)	380, 644, 740, 827, 850, 994
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	674
BseNI	ACTGG	2 cut(s)	114, 719
BseRI	GAGGAG	2 cut(s)	182, 718
BseSI	GKGCMC	1 cut(s)	1011
BseXI	GCAGC	4 cut(s)	350, 403, 406, 415
BseYI	CCCAGC	2 cut(s)	56, 380
BsgI	GTGCAG	1 cut(s)	357
BshNI	GGYRCC	2 cut(s)	262, 942
BsiHKCI	CYCGRG	1 cut(s)	1010
BslFI	GGGAC	2 cut(s)	397, 696
BslI	CCNNNNNNNGG	6 cut(s)	380, 644, 740, 827, 850, 994
BsmFI	GGGAC	2 cut(s)	397, 696
BsmI	GAATGC	2 cut(s)	714, 1027
BsoBI	CYCGRG	1 cut(s)	1010
Bsp1286I	GDGCHC	1 cut(s)	1011
Bsp1407I	TGTACA	1 cut(s)	187
Bsp143I	GATC	4 cut(s)	538, 557, 580, 694
Bsp19I	CCATGG	1 cut(s)	949
BspACI	CCGC	3 cut(s)	590, 633, 946
BspCNI	CTCAG	1 cut(s)	673
BspHI	TCATGA	1 cut(s)	444
BspLI	GGNNCC	2 cut(s)	264, 944
BspPI	GGATC	2 cut(s)	533, 575
BspT107I	GGYRCC	2 cut(s)	262, 942
BsrBI	CCGCTC	1 cut(s)	635
BsrDI	GCAATG	1 cut(s)	357
BsrGI	TGTACA	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	114, 719
BssECI	CCNNGG	3 cut(s)	433, 949, 1011
BssMI	GATC	4 cut(s)	538, 557, 580, 694
BssT1I	CCWWGG	2 cut(s)	433, 949
Bst6I	CTCTTC	1 cut(s)	216
BstAUI	TGTACA	1 cut(s)	187
BstDEI	CTNAG	3 cut(s)	660, 900, 1026
BstDSI	CCRYGG	1 cut(s)	949
BstF5I	GGATG	1 cut(s)	563
BstKTI	GATC	4 cut(s)	541, 560, 583, 697
BstMBI	GATC	4 cut(s)	538, 557, 580, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 428, 437
BstSLI	GKGCMC	1 cut(s)	1011
BstV1I	GCAGC	4 cut(s)	350, 403, 406, 415
BstX2I	RGATCY	2 cut(s)	538, 580
BstYI	RGATCY	2 cut(s)	538, 580
Bsu36I	CCTNAGG	1 cut(s)	660
BtgI	CCRYGG	1 cut(s)	949
BtsCI	GGATG	1 cut(s)	563
BtsI	GCAGTG	2 cut(s)	340, 555
BtsIMutI	CAGTG	2 cut(s)	340, 555
CciI	TCATGA	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	743, 1015
Csp6I	GTAC	4 cut(s)	29, 107, 188, 243
CviAII	CATG	9 cut(s)	259, 308, 445, 464, 482, 568, 794, 950, 974
CviQI	GTAC	4 cut(s)	29, 107, 188, 243
DdeI	CTNAG	3 cut(s)	660, 900, 1026
DpnI	GATC	4 cut(s)	540, 559, 582, 696
DpnII	GATC	4 cut(s)	538, 557, 580, 694
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	433, 949
Eco32I	GATATC	1 cut(s)	763
Eco47I	GGWCC	2 cut(s)	743, 1015
Eco81I	CCTNAGG	1 cut(s)	660
Eco88I	CYCGRG	1 cut(s)	1010
EcoRI	GAATTC	1 cut(s)	254
EcoRV	GATATC	1 cut(s)	763
EcoT14I	CCWWGG	2 cut(s)	433, 949
EcoT22I	ATGCAT	3 cut(s)	6, 309, 982
ErhI	CCWWGG	2 cut(s)	433, 949
FaeI	CATG	9 cut(s)	262, 311, 448, 467, 485, 571, 797, 953, 977
FaqI	GGGAC	2 cut(s)	397, 696
FatI	CATG	9 cut(s)	258, 307, 444, 463, 481, 567, 793, 949, 973
FauI	CCCGC	1 cut(s)	597
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	5 cut(s)	339, 417, 420, 429, 946
FokI	GGATG	1 cut(s)	550
Fsp4HI	GCNGC	5 cut(s)	339, 417, 420, 429, 946
FspBI	CTAG	4 cut(s)	174, 366, 555, 840
GluI	GCNGC	5 cut(s)	339, 417, 420, 429, 946
GsaI	CCCAGC	2 cut(s)	60, 384
GsuI	CTGGAG	1 cut(s)	300
Hin1II	CATG	9 cut(s)	262, 311, 448, 467, 485, 571, 797, 953, 977
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HindIII	AAGCTT	1 cut(s)	778
HinfI	GANTC	8 cut(s)	170, 274, 385, 493, 784, 812, 863, 890
HphI	GGTGA	1 cut(s)	552
Hpy166II	GTNNAC	3 cut(s)	287, 630, 647
Hpy188I	TCNGA	6 cut(s)	93, 253, 498, 580, 694, 743
Hpy188III	TCNNGA	2 cut(s)	445, 1018
Hpy8I	GTNNAC	3 cut(s)	287, 630, 647
HpyAV	CCTTC	3 cut(s)	304, 744, 826
HpyCH4V	TGCA	7 cut(s)	4, 307, 338, 440, 620, 918, 980
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 428, 437
HpyF3I	CTNAG	3 cut(s)	660, 900, 1026
Hsp92II	CATG	9 cut(s)	262, 311, 448, 467, 485, 571, 797, 953, 977
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	4 cut(s)	538, 557, 580, 694
LmnI	GCTCC	2 cut(s)	640, 953
Lsp1109I	GCAGC	4 cut(s)	350, 403, 406, 415
LweI	GCATC	2 cut(s)	967, 989
MaeI	CTAG	4 cut(s)	174, 366, 555, 840
MaeIII	GTNAC	5 cut(s)	99, 176, 532, 550, 875
MalI	GATC	4 cut(s)	540, 559, 582, 696
MbiI	CCGCTC	1 cut(s)	635
MboI	GATC	4 cut(s)	538, 557, 580, 694
MboII	GAAGA	3 cut(s)	74, 233, 239
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	2 cut(s)	538, 580
MhlI	GDGCHC	1 cut(s)	1011
MluCI	AATT	6 cut(s)	13, 237, 254, 485, 527, 958
MlyI	GAGTC	3 cut(s)	179, 379, 806
MmeI	TCCRAC	3 cut(s)	721, 994, 1012
Mph1103I	ATGCAT	3 cut(s)	6, 309, 982
MseI	TTAA	3 cut(s)	270, 600, 1060
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	380
MunI	CAATTG	1 cut(s)	237
Mva1269I	GAATGC	2 cut(s)	714, 1027
MwoI	GCNNNNNNNGC	3 cut(s)	425, 428, 437
NcoI	CCATGG	1 cut(s)	949
NdeII	GATC	4 cut(s)	538, 557, 580, 694
NlaIII	CATG	9 cut(s)	262, 311, 448, 467, 485, 571, 797, 953, 977
NlaIV	GGNNCC	2 cut(s)	264, 944
NmuCI	GTSAC	2 cut(s)	176, 550
NsiI	ATGCAT	3 cut(s)	6, 309, 982
PagI	TCATGA	1 cut(s)	444
PctI	GAATGC	2 cut(s)	714, 1027
PfeI	GAWTC	5 cut(s)	274, 493, 784, 863, 890
PflMI	CCANNNNNTGG	3 cut(s)	380, 644, 827
PkrI	GCNGC	5 cut(s)	340, 418, 421, 430, 947
PleI	GAGTC	3 cut(s)	178, 379, 806
PpsI	GAGTC	3 cut(s)	178, 379, 806
PshBI	ATTAAT	1 cut(s)	600
PsiI	TTATAA	1 cut(s)	774
PspFI	CCCAGC	2 cut(s)	56, 380
PspN4I	GGNNCC	2 cut(s)	264, 944
PspPI	GGNCC	2 cut(s)	743, 1015
PsuI	RGATCY	2 cut(s)	538, 580
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	4 cut(s)	30, 108, 189, 244
RsaNI	GTAC	4 cut(s)	29, 107, 188, 243
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	270, 600, 1060
SatI	GCNGC	5 cut(s)	339, 417, 420, 429, 946
Sau3AI	GATC	4 cut(s)	538, 557, 580, 694
Sau96I	GGNCC	2 cut(s)	743, 1015
ScaI	AGTACT	1 cut(s)	108
SchI	GAGTC	3 cut(s)	179, 379, 806
SduI	GDGCHC	1 cut(s)	1011
SfaNI	GCATC	2 cut(s)	967, 989
SinI	GGWCC	2 cut(s)	743, 1015
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	6 cut(s)	13, 237, 254, 485, 527, 958
SsiI	CCGC	3 cut(s)	590, 633, 946
SspMI	CTAG	4 cut(s)	174, 366, 555, 840
StyI	CCWWGG	2 cut(s)	433, 949
TaqI	TCGA	1 cut(s)	200
TasI	AATT	6 cut(s)	13, 237, 254, 485, 527, 958
TatI	WGTACW	3 cut(s)	28, 106, 187
TauI	GCSGC	1 cut(s)	948
TfiI	GAWTC	5 cut(s)	274, 493, 784, 863, 890
Tru1I	TTAA	3 cut(s)	270, 600, 1060
Tru9I	TTAA	3 cut(s)	270, 600, 1060
TscAI	CASTG	2 cut(s)	340, 555
TseFI	GTSAC	2 cut(s)	176, 550
TseI	GCWGC	4 cut(s)	338, 416, 419, 428
Tsp45I	GTSAC	2 cut(s)	176, 550
TspDTI	ATGAA	8 cut(s)	247, 461, 474, 498, 564, 923, 954, 1049
TspRI	CASTG	2 cut(s)	340, 555
Van91I	CCANNNNNTGG	3 cut(s)	380, 644, 827
VpaK11BI	GGWCC	2 cut(s)	743, 1015
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	4 cut(s)	174, 366, 555, 840
ZrmI	AGTACT	1 cut(s)	108
Zsp2I	ATGCAT	3 cut(s)	6, 309, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.