Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8376349.1

Orthogroup ID

OG0008745

Physical Location & Seq

Genomic Coordinates Reverse (-)

273 .. 1031

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8376349.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atgcatggaactccagctcaatctcaaagcagtgcagctaataatagaaatctcattgcctctagtaagccaacagctgggactcctattggggtagaaccgaatgttgtagctgctgcctctgctgcccttggtgcaatcatgaatggcaataatgaacatggaaatatgattgaccatgaattgctgattcagattctgagcaacccaaagatgattgagaaattggttacagatccacaggcagtgactagatcaccatccatgacttcatcagatccattcccgcttcacattaataacacagaaagtattgcacctttgtcaaccgctccatcaagtggacatttctatcctcaggcaaatatgggtggaatgggacatctttctgatcaatctttgttatcaagcattccagtttcctcctcgccttctgtcggaccaccaccagcaaaggatatcaactattataaaagcttgattcaacaacatggaggggataggcacgactccttcccaccattcggcaatcgtcctagccaccattcggcaaaccaagaatccttcaatggttacaaatcaagggattcaaagcctaagattatgaagccttgcatatacttcaatagttcaagggggtgccgccatggagcaaattgttcattccaacatgatgcatctttccaacagcagggtagtcgtgtgcccgaggtccagaatgctaagagaatgaaagttgatagggagataagtagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

252

Amino Acids

27.02

Weight (kDa)

8.78

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19860 AT1G19860
fragaria_vesca	FvH4_2g38810 FvH4_2g38810 FvH4_2g38810 FvH4_2g38810
malus_domestica	MD08G1015700.v1.1 MD15G1014600.v1.1
prunus_persica	Prupe.1G368900_v2.0.a1
pyrus_communis	pycom08g01370 pycom15g01270
rosa_chinensis	RchiOBHm_Chr6g0302461
rosa_laevigata	RLG00000011169
rosa_multiflora	Rmu_co8159708.1_g000001 Rmu_co8376349.1_g000001 Rmu_sc0011021.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165750
rosa_rugosa	Rorug06G0314400
rosa_samantha	Rh6AG427500 Rh6BG475200 Rh6CG439600 Rh6DG426600
rosa_wichuraiana	Rw6G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	639
AccB7I	CCANNNNNTGG	2 cut(s)	77, 341
AccBSI	CCGCTC	1 cut(s)	332
AciI	CCGC	3 cut(s)	287, 330, 643
AclWI	GGATC	2 cut(s)	230, 272
AfiI	CCNNNNNNNGG	6 cut(s)	77, 341, 437, 524, 547, 691
AgsI	TTSAA	5 cut(s)	485, 568, 591, 625, 633
AluBI	AGCT	5 cut(s)	17, 38, 77, 113, 477
AluI	AGCT	5 cut(s)	17, 38, 77, 113, 477
AlwI	GGATC	2 cut(s)	230, 272
AlwNI	CAGNNNCTG	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	707
ApeKI	GCWGC	4 cut(s)	35, 113, 116, 125
AseI	ATTAAT	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	440, 712
AsuHPI	GGTGA	1 cut(s)	249
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	2 cut(s)	440, 712
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	708
BanI	GGYRCC	1 cut(s)	639
BbvI	GCAGC	4 cut(s)	47, 100, 103, 112
BccI	CCATC	2 cut(s)	268, 343
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BclI	TGATCA	1 cut(s)	391
BfaI	CTAG	3 cut(s)	63, 252, 537
BisI	GCNGC	5 cut(s)	36, 114, 117, 126, 643
BlsI	GCNGC	5 cut(s)	37, 115, 118, 127, 644
Bme18I	GGWCC	2 cut(s)	440, 712
BmeT110I	CYCGRG	1 cut(s)	707
BmgT120I	GGNCC	2 cut(s)	440, 712
BmiI	GGNNCC	1 cut(s)	641
BmsI	GCATC	2 cut(s)	664, 686
BsaBI	GATNNNNATC	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	130, 646, 708
Bsc4I	CCNNNNNNNGG	6 cut(s)	77, 341, 437, 524, 547, 691
Bse1I	ACTGG	1 cut(s)	416
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	259
BseDI	CCNNGG	3 cut(s)	130, 646, 708
BseGI	GGATG	1 cut(s)	260
BseJI	GATNNNNATC	1 cut(s)	259
BseLI	CCNNNNNNNGG	6 cut(s)	77, 341, 437, 524, 547, 691
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	191, 371
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	415
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	4 cut(s)	47, 100, 103, 112
BseYI	CCCAGC	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	707
BslFI	GGGAC	2 cut(s)	94, 393
BslI	CCNNNNNNNGG	6 cut(s)	77, 341, 437, 524, 547, 691
BsmFI	GGGAC	2 cut(s)	94, 393
BsmI	GAATGC	2 cut(s)	411, 724
BsoBI	CYCGRG	1 cut(s)	707
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp143I	GATC	4 cut(s)	235, 254, 277, 391
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	3 cut(s)	287, 330, 643
BspCNI	CTCAG	2 cut(s)	192, 370
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	641
BspPI	GGATC	2 cut(s)	230, 272
BspT107I	GGYRCC	1 cut(s)	639
BsrBI	CCGCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	416
BssECI	CCNNGG	3 cut(s)	130, 646, 708
BssMI	GATC	4 cut(s)	235, 254, 277, 391
BssT1I	CCWWGG	2 cut(s)	130, 646
BstDEI	CTNAG	4 cut(s)	200, 357, 597, 723
BstDSI	CCRYGG	1 cut(s)	646
BstF5I	GGATG	1 cut(s)	260
BstKTI	GATC	4 cut(s)	238, 257, 280, 394
BstMBI	GATC	4 cut(s)	235, 254, 277, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 125, 134
BstSLI	GKGCMC	1 cut(s)	708
BstV1I	GCAGC	4 cut(s)	47, 100, 103, 112
BstX2I	RGATCY	2 cut(s)	235, 277
BstYI	RGATCY	2 cut(s)	235, 277
Bsu36I	CCTNAGG	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	646
BtsCI	GGATG	1 cut(s)	260
BtsI	GCAGTG	2 cut(s)	37, 252
BtsIMutI	CAGTG	2 cut(s)	37, 252
CaiI	CAGNNNCTG	1 cut(s)	199
CciI	TCATGA	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	440, 712
CviAII	CATG	8 cut(s)	5, 142, 161, 179, 265, 491, 647, 671
CviJI	RGCY	9 cut(s)	17, 38, 70, 77, 113, 477, 540, 595, 610
CviKI_1	RGCY	9 cut(s)	17, 38, 70, 77, 113, 477, 540, 595, 610
DdeI	CTNAG	4 cut(s)	200, 357, 597, 723
DpnI	GATC	4 cut(s)	237, 256, 279, 393
DpnII	GATC	4 cut(s)	235, 254, 277, 391
Eco130I	CCWWGG	2 cut(s)	130, 646
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	440, 712
Eco81I	CCTNAGG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	707
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	2 cut(s)	130, 646
EcoT22I	ATGCAT	2 cut(s)	6, 679
ErhI	CCWWGG	2 cut(s)	130, 646
FaeI	CATG	8 cut(s)	8, 145, 164, 182, 268, 494, 650, 674
FaqI	GGGAC	2 cut(s)	94, 393
FatI	CATG	8 cut(s)	4, 141, 160, 178, 264, 490, 646, 670
FauI	CCCGC	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	5 cut(s)	36, 114, 117, 126, 643
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	5 cut(s)	36, 114, 117, 126, 643
FspBI	CTAG	3 cut(s)	63, 252, 537
GluI	GCNGC	5 cut(s)	36, 114, 117, 126, 643
GsaI	CCCAGC	1 cut(s)	81
Hin1II	CATG	8 cut(s)	8, 145, 164, 182, 268, 494, 650, 674
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	475
HinfI	GANTC	7 cut(s)	82, 190, 196, 481, 509, 560, 587
HphI	GGTGA	1 cut(s)	249
Hpy166II	GTNNAC	2 cut(s)	327, 344
Hpy188I	TCNGA	5 cut(s)	195, 201, 277, 391, 440
Hpy188III	TCNNGA	2 cut(s)	142, 715
Hpy8I	GTNNAC	2 cut(s)	327, 344
HpyAV	CCTTC	3 cut(s)	441, 523, 574
HpyCH4V	TGCA	6 cut(s)	4, 35, 137, 317, 615, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 125, 134
HpyF3I	CTNAG	4 cut(s)	200, 357, 597, 723
Hsp92II	CATG	8 cut(s)	8, 145, 164, 182, 268, 494, 650, 674
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	235, 254, 277, 391
LmnI	GCTCC	2 cut(s)	337, 650
LpnPI	CCDG	8 cut(s)	27, 63, 227, 344, 429, 462, 677, 728
Lsp1109I	GCAGC	4 cut(s)	47, 100, 103, 112
LweI	GCATC	2 cut(s)	664, 686
MaeI	CTAG	3 cut(s)	63, 252, 537
MaeIII	GTNAC	3 cut(s)	229, 247, 572
MalI	GATC	4 cut(s)	237, 256, 279, 393
MbiI	CCGCTC	1 cut(s)	332
MboI	GATC	4 cut(s)	235, 254, 277, 391
MflI	RGATCY	2 cut(s)	235, 277
MhlI	GDGCHC	1 cut(s)	708
MluCI	AATT	3 cut(s)	182, 224, 655
MlyI	GAGTC	2 cut(s)	76, 503
MmeI	TCCRAC	3 cut(s)	418, 691, 709
MnlI	CCTC	7 cut(s)	70, 130, 366, 433, 436, 488, 703
Mph1103I	ATGCAT	2 cut(s)	6, 679
MseI	TTAA	2 cut(s)	297, 757
MspA1I	CMGCKG	1 cut(s)	77
Mva1269I	GAATGC	2 cut(s)	411, 724
MwoI	GCNNNNNNNGC	3 cut(s)	122, 125, 134
NcoI	CCATGG	1 cut(s)	646
NdeII	GATC	4 cut(s)	235, 254, 277, 391
NlaIII	CATG	8 cut(s)	8, 145, 164, 182, 268, 494, 650, 674
NlaIV	GGNNCC	1 cut(s)	641
NmuCI	GTSAC	1 cut(s)	247
NsiI	ATGCAT	2 cut(s)	6, 679
PagI	TCATGA	1 cut(s)	141
PctI	GAATGC	2 cut(s)	411, 724
PfeI	GAWTC	5 cut(s)	190, 196, 481, 560, 587
PflMI	CCANNNNNTGG	2 cut(s)	77, 341
PkrI	GCNGC	5 cut(s)	37, 115, 118, 127, 644
PleI	GAGTC	2 cut(s)	76, 503
PpsI	GAGTC	2 cut(s)	76, 503
PshBI	ATTAAT	1 cut(s)	297
PsiI	TTATAA	1 cut(s)	471
PspFI	CCCAGC	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	641
PspPI	GGNCC	2 cut(s)	440, 712
PstNI	CAGNNNCTG	1 cut(s)	199
PsuI	RGATCY	2 cut(s)	235, 277
PvuII	CAGCTG	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	297, 757
SatI	GCNGC	5 cut(s)	36, 114, 117, 126, 643
Sau3AI	GATC	4 cut(s)	235, 254, 277, 391
Sau96I	GGNCC	2 cut(s)	440, 712
SchI	GAGTC	2 cut(s)	76, 503
SduI	GDGCHC	1 cut(s)	708
SetI	ASST	7 cut(s)	19, 40, 79, 115, 322, 479, 714
SfaNI	GCATC	2 cut(s)	664, 686
SinI	GGWCC	2 cut(s)	440, 712
Sse9I	AATT	3 cut(s)	182, 224, 655
SsiI	CCGC	3 cut(s)	287, 330, 643
SspMI	CTAG	3 cut(s)	63, 252, 537
StyI	CCWWGG	2 cut(s)	130, 646
TasI	AATT	3 cut(s)	182, 224, 655
TauI	GCSGC	1 cut(s)	645
TfiI	GAWTC	5 cut(s)	190, 196, 481, 560, 587
Tru1I	TTAA	2 cut(s)	297, 757
Tru9I	TTAA	2 cut(s)	297, 757
TscAI	CASTG	2 cut(s)	37, 252
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	4 cut(s)	35, 113, 116, 125
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	7 cut(s)	158, 171, 195, 261, 620, 651, 746
TspRI	CASTG	2 cut(s)	37, 252
Van91I	CCANNNNNTGG	2 cut(s)	77, 341
VpaK11BI	GGWCC	2 cut(s)	440, 712
VspI	ATTAAT	1 cut(s)	297
XspI	CTAG	3 cut(s)	63, 252, 537
Zsp2I	ATGCAT	2 cut(s)	6, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.