Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011021.1

Orthogroup ID

OG0008745

Physical Location & Seq

Genomic Coordinates Reverse (-)

24977 .. 25522

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011021.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgattgagaaattggttacagatccacaggcagtgactagatcaccatccatgacttcatcagatccattcccgcttcacattaataacacagaaagtattgcacctttgtcaaccgctccatcaagtggacatttctatcctcaggcaaatatgggtggaatgggacatctttctgatcaatctttgttatcaagcattccagtttcctcctcgccttctgtcggaccaccaccagcaaaggatatcaactattataaaagcttgattcaacaacatggaggggataggcacgactccttcccaccattcggcaatcgtcctagccaccattcggcaaaccaagaatccttcaatggttacaaatcaagggattcaaagcctaagattatgaagccttgcatatacttcaatagttcaagggggtgccgccatggagcaaattgttcattccaacatgatgcatctttccaacagcagggtagtcgtgtgcccgaggtccagaatgctaagagaatgaaagttgatagggagataagtagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

181

Amino Acids

19.83

Weight (kDa)

9.05

Isoelectric Point (pI)

63.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19860 AT1G19860
fragaria_vesca	FvH4_2g38810 FvH4_2g38810 FvH4_2g38810 FvH4_2g38810
malus_domestica	MD08G1015700.v1.1 MD15G1014600.v1.1
prunus_persica	Prupe.1G368900_v2.0.a1
pyrus_communis	pycom08g01370 pycom15g01270
rosa_chinensis	RchiOBHm_Chr6g0302461
rosa_laevigata	RLG00000011169
rosa_multiflora	Rmu_co8159708.1_g000001 Rmu_co8376349.1_g000001 Rmu_sc0011021.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165750
rosa_rugosa	Rorug06G0314400
rosa_samantha	Rh6AG427500 Rh6BG475200 Rh6CG439600 Rh6DG426600
rosa_wichuraiana	Rw6G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	426
AccB7I	CCANNNNNTGG	1 cut(s)	128
AccBSI	CCGCTC	1 cut(s)	119
AciI	CCGC	3 cut(s)	74, 117, 430
AclWI	GGATC	2 cut(s)	17, 59
AfiI	CCNNNNNNNGG	5 cut(s)	128, 224, 311, 334, 478
AgsI	TTSAA	5 cut(s)	272, 355, 378, 412, 420
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
AlwI	GGATC	2 cut(s)	17, 59
Ama87I	CYCGRG	1 cut(s)	494
AseI	ATTAAT	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	227, 499
AsuHPI	GGTGA	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	494
AvaII	GGWCC	2 cut(s)	227, 499
AxyI	CCTNAGG	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	426
BccI	CCATC	2 cut(s)	55, 130
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BclI	TGATCA	1 cut(s)	178
BfaI	CTAG	2 cut(s)	39, 324
BisI	GCNGC	1 cut(s)	430
BlsI	GCNGC	1 cut(s)	431
Bme18I	GGWCC	2 cut(s)	227, 499
BmeT110I	CYCGRG	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	227, 499
BmiI	GGNNCC	1 cut(s)	428
BmsI	GCATC	2 cut(s)	451, 473
BsaBI	GATNNNNATC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	433, 495
Bsc4I	CCNNNNNNNGG	5 cut(s)	128, 224, 311, 334, 478
Bse1I	ACTGG	1 cut(s)	203
Bse21I	CCTNAGG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	46
BseDI	CCNNGG	2 cut(s)	433, 495
BseGI	GGATG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	46
BseLI	CCNNNNNNNGG	5 cut(s)	128, 224, 311, 334, 478
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	202
BseSI	GKGCMC	1 cut(s)	495
BshNI	GGYRCC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	494
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	5 cut(s)	128, 224, 311, 334, 478
BsmFI	GGGAC	1 cut(s)	180
BsmI	GAATGC	2 cut(s)	198, 511
BsoBI	CYCGRG	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	4 cut(s)	22, 41, 64, 178
Bsp19I	CCATGG	1 cut(s)	433
BspACI	CCGC	3 cut(s)	74, 117, 430
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	428
BspPI	GGATC	2 cut(s)	17, 59
BspT107I	GGYRCC	1 cut(s)	426
BsrBI	CCGCTC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	433, 495
BssMI	GATC	4 cut(s)	22, 41, 64, 178
BssT1I	CCWWGG	1 cut(s)	433
BstDEI	CTNAG	3 cut(s)	144, 384, 510
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	1 cut(s)	47
BstKTI	GATC	4 cut(s)	25, 44, 67, 181
BstMBI	GATC	4 cut(s)	22, 41, 64, 178
BstSLI	GKGCMC	1 cut(s)	495
BstX2I	RGATCY	2 cut(s)	22, 64
BstYI	RGATCY	2 cut(s)	22, 64
Bsu36I	CCTNAGG	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	227, 499
CviAII	CATG	4 cut(s)	52, 278, 434, 458
CviJI	RGCY	4 cut(s)	264, 327, 382, 397
CviKI_1	RGCY	4 cut(s)	264, 327, 382, 397
DdeI	CTNAG	3 cut(s)	144, 384, 510
DpnI	GATC	4 cut(s)	24, 43, 66, 180
DpnII	GATC	4 cut(s)	22, 41, 64, 178
Eco130I	CCWWGG	1 cut(s)	433
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	227, 499
Eco81I	CCTNAGG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	494
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	4 cut(s)	55, 281, 437, 461
FaiI	YATR	9 cut(s)	53, 155, 258, 279, 392, 404, 406, 435, 459
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	4 cut(s)	51, 277, 433, 457
FauI	CCCGC	1 cut(s)	81
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	430
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	430
FspBI	CTAG	2 cut(s)	39, 324
GluI	GCNGC	1 cut(s)	430
Hin1II	CATG	4 cut(s)	55, 281, 437, 461
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	4 cut(s)	268, 296, 347, 374
HphI	GGTGA	1 cut(s)	36
Hpy166II	GTNNAC	2 cut(s)	114, 131
Hpy188I	TCNGA	3 cut(s)	64, 178, 227
Hpy188III	TCNNGA	1 cut(s)	502
Hpy8I	GTNNAC	2 cut(s)	114, 131
HpyAV	CCTTC	3 cut(s)	228, 310, 361
HpyCH4V	TGCA	3 cut(s)	104, 402, 464
HpyF3I	CTNAG	3 cut(s)	144, 384, 510
Hsp92II	CATG	4 cut(s)	55, 281, 437, 461
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	22, 41, 64, 178
LmnI	GCTCC	2 cut(s)	124, 437
LpnPI	CCDG	6 cut(s)	14, 131, 216, 249, 464, 515
LweI	GCATC	2 cut(s)	451, 473
MaeI	CTAG	2 cut(s)	39, 324
MaeIII	GTNAC	3 cut(s)	16, 34, 359
MalI	GATC	4 cut(s)	24, 43, 66, 180
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	4 cut(s)	22, 41, 64, 178
MflI	RGATCY	2 cut(s)	22, 64
MhlI	GDGCHC	1 cut(s)	495
MluCI	AATT	2 cut(s)	11, 442
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	3 cut(s)	205, 478, 496
MnlI	CCTC	5 cut(s)	153, 220, 223, 275, 490
Mph1103I	ATGCAT	1 cut(s)	466
MseI	TTAA	2 cut(s)	84, 544
Mva1269I	GAATGC	2 cut(s)	198, 511
NcoI	CCATGG	1 cut(s)	433
NdeII	GATC	4 cut(s)	22, 41, 64, 178
NlaIII	CATG	4 cut(s)	55, 281, 437, 461
NlaIV	GGNNCC	1 cut(s)	428
NmuCI	GTSAC	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	466
PctI	GAATGC	2 cut(s)	198, 511
PfeI	GAWTC	3 cut(s)	268, 347, 374
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	431
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PshBI	ATTAAT	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	428
PspPI	GGNCC	2 cut(s)	227, 499
PsuI	RGATCY	2 cut(s)	22, 64
SaqAI	TTAA	2 cut(s)	84, 544
SatI	GCNGC	1 cut(s)	430
Sau3AI	GATC	4 cut(s)	22, 41, 64, 178
Sau96I	GGNCC	2 cut(s)	227, 499
SchI	GAGTC	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	495
SetI	ASST	3 cut(s)	109, 266, 501
SfaNI	GCATC	2 cut(s)	451, 473
SinI	GGWCC	2 cut(s)	227, 499
Sse9I	AATT	2 cut(s)	11, 442
SsiI	CCGC	3 cut(s)	74, 117, 430
SspMI	CTAG	2 cut(s)	39, 324
StyI	CCWWGG	1 cut(s)	433
TasI	AATT	2 cut(s)	11, 442
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	3 cut(s)	268, 347, 374
Tru1I	TTAA	2 cut(s)	84, 544
Tru9I	TTAA	2 cut(s)	84, 544
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	48, 407, 438, 533
TspRI	CASTG	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	128
VpaK11BI	GGWCC	2 cut(s)	227, 499
VspI	ATTAAT	1 cut(s)	84
XspI	CTAG	2 cut(s)	39, 324
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.