Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8159708.1

Orthogroup ID

OG0008745

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 645

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8159708.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 412 bp

atgtggatgtttacagtttcctttgaacttttagtcctcaggtcagttaagctgtttctgttggaggactctccgtcacaagttgggttgagtgctcaagatcacctccaagcaaagacatcatggttgtcacattcatctggaacaggctctgacgacaatctgccccctggttttgaaagtgctcatccagcaaatcagctgcagatagacttgtctcaaattcctttaattagatggaaatctcctccgagggttgtactgaacttggcttggcaagttgttgctggggaagaaagcaaagaggtagagagtgaaaatcagagagagttacgagtactggaagcagtttatccacgaccatctgctattcctctaaagttcgattcttgcttttttatcttcttatggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

137

Amino Acids

15.52

Weight (kDa)

5.1

Isoelectric Point (pI)

58.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19860 AT1G19860
fragaria_vesca	FvH4_2g38810 FvH4_2g38810 FvH4_2g38810 FvH4_2g38810
malus_domestica	MD08G1015700.v1.1 MD15G1014600.v1.1
prunus_persica	Prupe.1G368900_v2.0.a1
pyrus_communis	pycom08g01370 pycom15g01270
rosa_chinensis	RchiOBHm_Chr6g0302461
rosa_laevigata	RLG00000011169
rosa_multiflora	Rmu_co8159708.1_g000001 Rmu_co8376349.1_g000001 Rmu_sc0011021.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165750
rosa_rugosa	Rorug06G0314400
rosa_samantha	Rh6AG427500 Rh6BG475200 Rh6CG439600 Rh6DG426600
rosa_wichuraiana	Rw6G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	222
AfaI	GTAC	2 cut(s)	261, 339
AgsI	TTSAA	2 cut(s)	26, 179
AhdI	GACNNNNNGTC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	169
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	2 cut(s)	52, 202
AluI	AGCT	2 cut(s)	52, 202
Alw21I	GWGCWC	2 cut(s)	97, 187
Alw26I	GTCTC	1 cut(s)	222
AlwNI	CAGNNNCTG	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	222
AsuHPI	GGTGA	1 cut(s)	95
AxyI	CCTNAGG	1 cut(s)	38
Bbv12I	GWGCWC	2 cut(s)	97, 187
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	2 cut(s)	231, 370
BciT130I	CCWGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	203
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
BmcAI	AGTACT	1 cut(s)	339
Bme1390I	CCNGG	1 cut(s)	171
BmeRI	GACNNNNNGTC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	241
BsaJI	CCNNGG	2 cut(s)	169, 251
Bse1I	ACTGG	1 cut(s)	345
Bse21I	CCTNAGG	1 cut(s)	38
Bse8I	GATNNNNATC	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	169, 251
BseGI	GGATG	2 cut(s)	12, 187
BseJI	GATNNNNATC	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	189
BseYI	CCCAGC	1 cut(s)	287
BsiHKAI	GWGCWC	2 cut(s)	97, 187
BsmAI	GTCTC	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	97, 187
Bsp143I	GATC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	169, 251
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	12, 187
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	12, 187
CaiI	CAGNNNCTG	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	260, 338
CviAII	CATG	1 cut(s)	123
CviJI	RGCY	4 cut(s)	52, 150, 202, 272
CviKI_1	RGCY	4 cut(s)	52, 150, 202, 272
CviQI	GTAC	2 cut(s)	260, 338
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
DriI	GACNNNNNGTC	1 cut(s)	73
Eam1105I	GACNNNNNGTC	1 cut(s)	73
Eco81I	CCTNAGG	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	169
FaeI	CATG	1 cut(s)	126
FaiI	YATR	2 cut(s)	124, 409
FatI	CATG	1 cut(s)	122
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	2 cut(s)	19, 174
Fsp4HI	GCNGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	203
GsaI	CCCAGC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	126
HinfI	GANTC	2 cut(s)	68, 386
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	3 cut(s)	154, 252, 324
Hpy188III	TCNNGA	2 cut(s)	98, 141
Hpy8I	GTNNAC	1 cut(s)	12
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	8 cut(s)	25, 126, 132, 156, 183, 204, 273, 326
Lsp1109I	GCAGC	1 cut(s)	189
MaeIII	GTNAC	3 cut(s)	75, 129, 330
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	305, 394
MhlI	GDGCHC	2 cut(s)	97, 187
MluCI	AATT	2 cut(s)	222, 231
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	7 cut(s)	47, 58, 116, 246, 258, 298, 384
MseI	TTAA	2 cut(s)	48, 230
MspA1I	CMGCKG	1 cut(s)	202
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	126
NmuCI	GTSAC	2 cut(s)	75, 129
PfeI	GAWTC	1 cut(s)	386
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	2 cut(s)	261, 339
RsaNI	GTAC	2 cut(s)	260, 338
SaqAI	TTAA	2 cut(s)	48, 230
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	339
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	2 cut(s)	97, 187
SetI	ASST	5 cut(s)	44, 54, 108, 204, 309
SfcI	CTRYAG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	2 cut(s)	222, 231
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	1 cut(s)	384
TasI	AATT	2 cut(s)	222, 231
TatI	WGTACW	2 cut(s)	259, 337
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	2 cut(s)	48, 230
Tru9I	TTAA	2 cut(s)	48, 230
TseFI	GTSAC	2 cut(s)	75, 129
TseI	GCWGC	1 cut(s)	202
Tsp45I	GTSAC	2 cut(s)	75, 129
TspDTI	ATGAA	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	63
XapI	RAATTY	1 cut(s)	222
ZrmI	AGTACT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.