Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008745

Physical Location & Seq

Genomic Coordinates Reverse (-)

7300867 .. 7305097

Gene Structure 4231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011169

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGCGGGGATTGCAGAAACGGGTTTCTTGGGCTTCAGATGTTAATCTTTCACAGGTTAAGCTGTTTCTGTTGGAGGACTCTCCTTCACAAGTTGGGTTGAGTGCTCAAGATCACCTCCAAGCAAAGACATCATGGTTGTCACATTCATCTGGAACAGGCTCTGACGACAATCTGCCCCCTGGTTTTGAAAGTGCTCATCCAGCAAATCAGCTGCAGATAGACTTGTCTCAAATTCCTTTAATTAGATGGAAATCTCCTCCTAGGGTTGTACTGAACTTGGCTTGGCAAGTTGTTGCTGGGGAAGAAAGCAAAGAGGTAGAGAGTGAAAATCAGAGAGAGTTACGAGTACTGGAAGCAGTTTATCCACGACCATCTGCTATTCCTCTAAACCCCTTTGTAGATGTGGAGGAGTCTAGTCACAATGATGTACAACCTCTTTCGATACCTATTACTCCTATTGAAGAGGAAGATGTAGCAATTGGTACATCATCTGAATTCATGGTGCCATTTAAGATTCCCACAAGTTCACAATCCTACCTATCAATGCATGGAACTCCAGCTCAATCTCAAAGCAGTGCAGCTATTAATAGAAATCTCATTGCCTCTAGTAAGCCAACAGCTGGGACTCCTATTGGGGTAGAACCGAATGTTGTAGCTGCTGCCTCTGCTGCCCTTGGTGCAATCATGAATGGCAATAATGAACATGGAAATATGATTGACCATGAATTGCTGATTCAGATTCTGAGCAACCCAAAGATGATTGAGAAGTTGGTTACAGATCCACAGGCAGTGACTAGATCACCATCCATGACTTCATCAGATCCATTCCCGCTTCACATTAATAACACAGAAAGTATTGCGCCTTTGTCAACCACTCCATCAAGTGGACATTTCTATCCTCAGGCAAATATAGGTGGAATGGGACATCTTTCTGATCAATCTTTGTTATCAAGCATTCCAGTTTCCTCCTCGCCTTCTGTTGGACCACCACCAGCAAAGGATATTAACTATTATAAAAGCTTGATTCAACAACATGGAGGGGATAGGCACGACTCCTTCCCACCATTTGGCAATCGTCCTAGCCACCATTCGGCAAACCAAGAATCCTTTAATGGTTACAAATCAAGGGATTCAAAGCCTAAGATTATGAAGCCTTGCATATACTTCAATAGTTCAAGGGGATGCCGCCATGGAGCGAATTGTTCATTCCAACATGATGCATCTTTCCAACAGCAGGGTAGTCGTGTGCCCGAGGTCCAGAATGCTAAGAGAATGAAAGTTGATAGGGAGATAAGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

434

Amino Acids

47.01

Weight (kDa)

6.05

Isoelectric Point (pI)

58.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19860 AT1G19860
fragaria_vesca	FvH4_2g38810 FvH4_2g38810 FvH4_2g38810 FvH4_2g38810
malus_domestica	MD08G1015700.v1.1 MD15G1014600.v1.1
prunus_persica	Prupe.1G368900_v2.0.a1
pyrus_communis	pycom08g01370 pycom15g01270
rosa_chinensis	RchiOBHm_Chr6g0302461
rosa_laevigata	RLG00000011169
rosa_multiflora	Rmu_co8159708.1_g000001 Rmu_co8376349.1_g000001 Rmu_sc0011021.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165750
rosa_rugosa	Rorug06G0314400
rosa_samantha	Rh6AG427500 Rh6BG475200 Rh6CG439600 Rh6DG426600
rosa_wichuraiana	Rw6G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1014
AccB1I	GGYRCC	1 cut(s)	502
AccB7I	CCANNNNNTGG	3 cut(s)	620, 884, 1067
AciI	CCGC	3 cut(s)	4, 830, 1186
AclWI	GGATC	2 cut(s)	773, 815
AcsI	RAATTY	2 cut(s)	231, 494
AcuI	CTGAAG	1 cut(s)	18
AfaI	GTAC	4 cut(s)	270, 348, 429, 484
AfiI	CCNNNNNNNGG	6 cut(s)	620, 884, 980, 1067, 1090, 1234
AgsI	TTSAA	6 cut(s)	188, 461, 1028, 1134, 1168, 1176
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	7 cut(s)	61, 211, 560, 581, 620, 656, 1020
AluI	AGCT	7 cut(s)	61, 211, 560, 581, 620, 656, 1020
Alw21I	GWGCWC	2 cut(s)	106, 196
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	773, 815
AlwNI	CAGNNNCTG	2 cut(s)	161, 742
Ama87I	CYCGRG	1 cut(s)	1250
ApeKI	GCWGC	5 cut(s)	211, 578, 656, 659, 668
ApoI	RAATTY	2 cut(s)	231, 494
AseI	ATTAAT	2 cut(s)	585, 840
AspA2I	CCTAGG	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	862
AspS9I	GGNCC	2 cut(s)	983, 1255
AsuHPI	GGTGA	2 cut(s)	104, 792
AvaI	CYCGRG	1 cut(s)	1250
AvaII	GGWCC	2 cut(s)	983, 1255
AvrII	CCTAGG	1 cut(s)	260
AxyI	CCTNAGG	1 cut(s)	900
BaeGI	GKGCMC	1 cut(s)	1251
BanI	GGYRCC	1 cut(s)	502
Bbv12I	GWGCWC	2 cut(s)	106, 196
BbvI	GCAGC	5 cut(s)	198, 590, 643, 646, 655
BccI	CCATC	4 cut(s)	240, 379, 811, 886
BcgI	CGANNNNNNTGC	2 cut(s)	1223, 1257
BciT130I	CCWGG	1 cut(s)	180
BclI	TGATCA	1 cut(s)	934
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	5 cut(s)	261, 414, 606, 795, 1080
BfmI	CTRYAG	1 cut(s)	212
BisI	GCNGC	6 cut(s)	212, 579, 657, 660, 669, 1186
BlnI	CCTAGG	1 cut(s)	260
BlsI	GCNGC	6 cut(s)	213, 580, 658, 661, 670, 1187
BmcAI	AGTACT	1 cut(s)	348
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	2 cut(s)	983, 1255
BmeT110I	CYCGRG	1 cut(s)	1250
BmgT120I	GGNCC	2 cut(s)	983, 1255
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	3 cut(s)	1172, 1207, 1229
BpmI	CTGGAG	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	90
BsaBI	GATNNNNATC	3 cut(s)	42, 250, 802
BsaJI	CCNNGG	5 cut(s)	178, 260, 673, 1189, 1251
Bsc4I	CCNNNNNNNGG	6 cut(s)	620, 884, 980, 1067, 1090, 1234
Bse1I	ACTGG	2 cut(s)	354, 959
Bse21I	CCTNAGG	1 cut(s)	900
Bse3DI	GCAATG	1 cut(s)	597
Bse8I	GATNNNNATC	3 cut(s)	42, 250, 802
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	5 cut(s)	178, 260, 673, 1189, 1251
BseGI	GGATG	3 cut(s)	196, 803, 1187
BseJI	GATNNNNATC	3 cut(s)	42, 250, 802
BseLI	CCNNNNNNNGG	6 cut(s)	620, 884, 980, 1067, 1090, 1234
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	2 cut(s)	734, 914
BseNI	ACTGG	2 cut(s)	354, 959
BseRI	GAGGAG	3 cut(s)	246, 422, 958
BseSI	GKGCMC	1 cut(s)	1251
BseXI	GCAGC	5 cut(s)	198, 590, 643, 646, 655
BseYI	CCCAGC	2 cut(s)	296, 620
BsgI	GTGCAG	1 cut(s)	597
BshNI	GGYRCC	1 cut(s)	502
BsiHKAI	GWGCWC	2 cut(s)	106, 196
BsiHKCI	CYCGRG	1 cut(s)	1250
BslFI	GGGAC	2 cut(s)	637, 936
BslI	CCNNNNNNNGG	6 cut(s)	620, 884, 980, 1067, 1090, 1234
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	637, 936
BsmI	GAATGC	2 cut(s)	954, 1267
BsoBI	CYCGRG	1 cut(s)	1250
Bsp1286I	GDGCHC	3 cut(s)	106, 196, 1251
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	5 cut(s)	109, 778, 797, 820, 934
Bsp19I	CCATGG	1 cut(s)	1189
BspACI	CCGC	3 cut(s)	4, 830, 1186
BspCNI	CTCAG	2 cut(s)	735, 913
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	1 cut(s)	504
BspMAI	CTGCAG	1 cut(s)	216
BspPI	GGATC	2 cut(s)	773, 815
BspT107I	GGYRCC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	597
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	354, 959
BssECI	CCNNGG	5 cut(s)	178, 260, 673, 1189, 1251
BssMI	GATC	5 cut(s)	109, 778, 797, 820, 934
BssT1I	CCWWGG	3 cut(s)	260, 673, 1189
Bst2UI	CCWGG	1 cut(s)	180
Bst6I	CTCTTC	1 cut(s)	456
BstAUI	TGTACA	1 cut(s)	427
BstDEI	CTNAG	4 cut(s)	743, 900, 1140, 1266
BstDSI	CCRYGG	1 cut(s)	1189
BstF5I	GGATG	3 cut(s)	196, 803, 1187
BstHHI	GCGC	1 cut(s)	862
BstKTI	GATC	5 cut(s)	112, 781, 800, 823, 937
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	5 cut(s)	109, 778, 797, 820, 934
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 200, 665, 668, 677
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	212
BstSLI	GKGCMC	1 cut(s)	1251
BstV1I	GCAGC	5 cut(s)	198, 590, 643, 646, 655
BstX2I	RGATCY	2 cut(s)	778, 820
BstYI	RGATCY	2 cut(s)	778, 820
Bsu36I	CCTNAGG	1 cut(s)	900
BtgI	CCRYGG	1 cut(s)	1189
BtsCI	GGATG	3 cut(s)	196, 803, 1187
BtsI	GCAGTG	2 cut(s)	580, 795
BtsIMutI	CAGTG	2 cut(s)	580, 795
CaiI	CAGNNNCTG	2 cut(s)	161, 742
CciI	TCATGA	1 cut(s)	684
CfoI	GCGC	1 cut(s)	862
Cfr13I	GGNCC	2 cut(s)	983, 1255
Csp6I	GTAC	4 cut(s)	269, 347, 428, 483
CviQI	GTAC	4 cut(s)	269, 347, 428, 483
DdeI	CTNAG	4 cut(s)	743, 900, 1140, 1266
DpnI	GATC	5 cut(s)	111, 780, 799, 822, 936
DpnII	GATC	5 cut(s)	109, 778, 797, 820, 934
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	3 cut(s)	260, 673, 1189
Eco47I	GGWCC	2 cut(s)	983, 1255
Eco57I	CTGAAG	1 cut(s)	18
Eco81I	CCTNAGG	1 cut(s)	900
Eco88I	CYCGRG	1 cut(s)	1250
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	3 cut(s)	260, 673, 1189
EcoT22I	ATGCAT	2 cut(s)	549, 1222
ErhI	CCWWGG	3 cut(s)	260, 673, 1189
FaqI	GGGAC	2 cut(s)	637, 936
FauI	CCCGC	1 cut(s)	837
FbaI	TGATCA	1 cut(s)	934
Fnu4HI	GCNGC	6 cut(s)	212, 579, 657, 660, 669, 1186
FokI	GGATG	3 cut(s)	183, 790, 1194
Fsp4HI	GCNGC	6 cut(s)	212, 579, 657, 660, 669, 1186
FspBI	CTAG	5 cut(s)	261, 414, 606, 795, 1080
GlaI	GCGC	1 cut(s)	861
GluI	GCNGC	6 cut(s)	212, 579, 657, 660, 669, 1186
GsaI	CCCAGC	2 cut(s)	300, 624
GsuI	CTGGAG	1 cut(s)	540
HhaI	GCGC	1 cut(s)	862
Hin6I	GCGC	1 cut(s)	860
HinP1I	GCGC	1 cut(s)	860
HincII	GTYRAC	1 cut(s)	870
HindII	GTYRAC	1 cut(s)	870
HindIII	AAGCTT	1 cut(s)	1018
HphI	GGTGA	2 cut(s)	104, 792
Hpy166II	GTNNAC	3 cut(s)	527, 870, 887
Hpy188I	TCNGA	8 cut(s)	37, 163, 333, 493, 738, 744, 820, 934
Hpy188III	TCNNGA	4 cut(s)	107, 150, 685, 1258
Hpy8I	GTNNAC	3 cut(s)	527, 870, 887
HpyAV	CCTTC	3 cut(s)	93, 984, 1066
HpyCH4V	TGCA	7 cut(s)	13, 214, 547, 578, 680, 1158, 1220
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 200, 665, 668, 677
HpyF3I	CTNAG	4 cut(s)	743, 900, 1140, 1266
HspAI	GCGC	1 cut(s)	860
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	5 cut(s)	109, 778, 797, 820, 934
LmnI	GCTCC	1 cut(s)	1193
Lsp1109I	GCAGC	5 cut(s)	198, 590, 643, 646, 655
LweI	GCATC	3 cut(s)	1172, 1207, 1229
MaeI	CTAG	5 cut(s)	261, 414, 606, 795, 1080
MaeIII	GTNAC	6 cut(s)	138, 339, 416, 772, 790, 1115
MalI	GATC	5 cut(s)	111, 780, 799, 822, 936
MboI	GATC	5 cut(s)	109, 778, 797, 820, 934
MboII	GAAGA	3 cut(s)	314, 473, 479
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	2 cut(s)	778, 820
MhlI	GDGCHC	3 cut(s)	106, 196, 1251
MluCI	AATT	6 cut(s)	231, 240, 477, 494, 725, 1198
MlyI	GAGTC	4 cut(s)	71, 419, 619, 1046
MmeI	TCCRAC	4 cut(s)	51, 961, 1234, 1252
Mph1103I	ATGCAT	2 cut(s)	549, 1222
MseI	TTAA	9 cut(s)	42, 57, 239, 510, 585, 840, 1005, 1110, 1300
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	2 cut(s)	211, 620
MspR9I	CCNGG	1 cut(s)	180
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	2 cut(s)	954, 1267
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	5 cut(s)	10, 200, 665, 668, 677
NcoI	CCATGG	1 cut(s)	1189
NdeII	GATC	5 cut(s)	109, 778, 797, 820, 934
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	3 cut(s)	138, 416, 790
NsiI	ATGCAT	2 cut(s)	549, 1222
PagI	TCATGA	1 cut(s)	684
PctI	GAATGC	2 cut(s)	954, 1267
PfeI	GAWTC	6 cut(s)	514, 733, 739, 1024, 1103, 1130
PflMI	CCANNNNNTGG	3 cut(s)	620, 884, 1067
PkrI	GCNGC	6 cut(s)	213, 580, 658, 661, 670, 1187
PleI	GAGTC	4 cut(s)	71, 418, 619, 1046
PpsI	GAGTC	4 cut(s)	71, 418, 619, 1046
PshBI	ATTAAT	2 cut(s)	585, 840
PsiI	TTATAA	1 cut(s)	1014
Psp6I	CCWGG	1 cut(s)	178
PspFI	CCCAGC	2 cut(s)	296, 620
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	2 cut(s)	983, 1255
PstI	CTGCAG	1 cut(s)	216
PstNI	CAGNNNCTG	2 cut(s)	161, 742
PsuI	RGATCY	2 cut(s)	778, 820
PvuII	CAGCTG	2 cut(s)	211, 620
RsaI	GTAC	4 cut(s)	270, 348, 429, 484
RsaNI	GTAC	4 cut(s)	269, 347, 428, 483
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	9 cut(s)	42, 57, 239, 510, 585, 840, 1005, 1110, 1300
SatI	GCNGC	6 cut(s)	212, 579, 657, 660, 669, 1186
Sau3AI	GATC	5 cut(s)	109, 778, 797, 820, 934
Sau96I	GGNCC	2 cut(s)	983, 1255
ScaI	AGTACT	1 cut(s)	348
SchI	GAGTC	4 cut(s)	71, 419, 619, 1046
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	3 cut(s)	106, 196, 1251
SfaNI	GCATC	3 cut(s)	1172, 1207, 1229
SfcI	CTRYAG	1 cut(s)	212
SinI	GGWCC	2 cut(s)	983, 1255
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	6 cut(s)	231, 240, 477, 494, 725, 1198
SsiI	CCGC	3 cut(s)	4, 830, 1186
SspMI	CTAG	5 cut(s)	261, 414, 606, 795, 1080
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	3 cut(s)	260, 673, 1189
TaqI	TCGA	1 cut(s)	440
TasI	AATT	6 cut(s)	231, 240, 477, 494, 725, 1198
TatI	WGTACW	3 cut(s)	268, 346, 427
TauI	GCSGC	1 cut(s)	1188
TfiI	GAWTC	6 cut(s)	514, 733, 739, 1024, 1103, 1130
Tru1I	TTAA	9 cut(s)	42, 57, 239, 510, 585, 840, 1005, 1110, 1300
Tru9I	TTAA	9 cut(s)	42, 57, 239, 510, 585, 840, 1005, 1110, 1300
TscAI	CASTG	2 cut(s)	580, 795
TseFI	GTSAC	3 cut(s)	138, 416, 790
TseI	GCWGC	5 cut(s)	211, 578, 656, 659, 668
Tsp45I	GTSAC	3 cut(s)	138, 416, 790
TspDTI	ATGAA	9 cut(s)	135, 487, 701, 714, 738, 804, 1163, 1194, 1289
TspRI	CASTG	2 cut(s)	580, 795
Van91I	CCANNNNNTGG	3 cut(s)	620, 884, 1067
VpaK11BI	GGWCC	2 cut(s)	983, 1255
VspI	ATTAAT	2 cut(s)	585, 840
XapI	RAATTY	2 cut(s)	231, 494
XmaJI	CCTAGG	1 cut(s)	260
XspI	CTAG	5 cut(s)	261, 414, 606, 795, 1080
ZrmI	AGTACT	1 cut(s)	348
Zsp2I	ATGCAT	2 cut(s)	549, 1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.