Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0008745

Physical Location & Seq

Genomic Coordinates Forward (+)

61438465 .. 61442700

Gene Structure 4236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGCGGGGATTGCAGAAACGGGTTTCTTGGGCTTCAGATGTTAATCTTTCACAGGTTAAGCTGTTTCTGTTGGAGGACTCTCCGTCACAAGTTGGGTTGAGTGCTCAAGATCACCTCCAAGCAAAGACATCATGGTTGTCACATTCATCTGGAACAGGCTCTGACGACAATCTGCCCCCTGGTTTTGAAAGTGCTCATCCAGCAAATCAGCTGCAGATAGACTTGTCTCAAATTCCTTTAATTAGATGGAAATCTCCTCCGAGGGTTGTACTGAACTTGGCTTGGCAAGTTGTTGCTGGGGAAGAAAGCAAAGAGGTAGAGAGTGAAAATCAGAGAGAGTTACGAGTACTGGAAGCAGTTTATCCACGACCATCTGCTATTCCTCTAAACCCCTTTGTAGATGTGGAGGAGTCTAGTCACAATGATGTACAACCTCTTTCGATACCTATTACTCCTATTGAAGAGGAAGATGTAGCAATTGGTACATCATCTGAATTCATGGTGCCATTTAAGATTCCCACAAGTTCACAATCCTTCCTATCAATGCATGGAACTCCAGCTCAATCTCAAAGCAGTGCAGCTAATAATAGAAATCTCATTGCCTCTAGTAAGCCAACAGCTGGGACTCCTATTGGGGTAGAACCGAATGTTGTAGCTGCTGCCTCTGCTGCCCTTGGTGCAATCATGAATGGCAATAATGAACATGGAAATATGATTGACCATGAATTGCTGATTCAGATTCTGAGCAACCCAAAGATGATTGAGAAATTGGTTACAGATCCACAGGCAGTGACTAGATCACCATCCATGACTTCATCAGATCCATTCCCGCTTCACATTAATAACACAGAAAGTATTGCACCTTTGTCAACCGCTCCATCAAGTGGACATTTCTATCCTCAGGCAAATATGGGTGGAATGGGACATCTTTCTGATCAATCTTTGTTATCAAGCATTCCAGTTTCCTCGCCTTCTGTCGGACCACCACCAGCAAAGGATATCAACTATTATAAAAGCTTGATTCAACAACATGGAGGGGATAGGCACGACTCCTTCCCACCATTCGGCAATCGTCCTAGCCACCATTCAGCAAACCAAGAATCCTTCAATGGTTACAAATCAAGGGATTCAAAGCCTAAGATTATGAAGCCTTGCATATACTTCAATAGTTCAAGGGGGTGCCGCCATGGAGCAAATTGTTCATTCCAACATGATGCATCTTTCCAACAGCAGGGTAGTCGTGTGCCCGAGGTCCAGAATGCTAAGAGAATGAAAGTTGATAGGGAGATAAGTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

432

Amino Acids

46.9

Weight (kDa)

6.05

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19860 AT1G19860
fragaria_vesca	FvH4_2g38810 FvH4_2g38810 FvH4_2g38810 FvH4_2g38810
malus_domestica	MD08G1015700.v1.1 MD15G1014600.v1.1
prunus_persica	Prupe.1G368900_v2.0.a1
pyrus_communis	pycom08g01370 pycom15g01270
rosa_chinensis	RchiOBHm_Chr6g0302461
rosa_laevigata	RLG00000011169
rosa_multiflora	Rmu_co8159708.1_g000001 Rmu_co8376349.1_g000001 Rmu_sc0011021.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165750
rosa_rugosa	Rorug06G0314400
rosa_samantha	Rh6AG427500 Rh6BG475200 Rh6CG439600 Rh6DG426600
rosa_wichuraiana	Rw6G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1011
AccB1I	GGYRCC	2 cut(s)	502, 1179
AccB7I	CCANNNNNTGG	2 cut(s)	620, 884
AccBSI	CCGCTC	1 cut(s)	875
AciI	CCGC	4 cut(s)	4, 830, 873, 1183
AclWI	GGATC	2 cut(s)	773, 815
AcsI	RAATTY	2 cut(s)	231, 494
AcuI	CTGAAG	1 cut(s)	18
AfaI	GTAC	4 cut(s)	270, 348, 429, 484
AfiI	CCNNNNNNNGG	5 cut(s)	620, 884, 977, 1064, 1231
AgsI	TTSAA	7 cut(s)	188, 461, 1025, 1108, 1131, 1165, 1173
AhdI	GACNNNNNGTC	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	7 cut(s)	61, 211, 560, 581, 620, 656, 1017
AluI	AGCT	7 cut(s)	61, 211, 560, 581, 620, 656, 1017
Alw21I	GWGCWC	2 cut(s)	106, 196
Alw26I	GTCTC	1 cut(s)	231
AlwI	GGATC	2 cut(s)	773, 815
AlwNI	CAGNNNCTG	2 cut(s)	161, 742
Ama87I	CYCGRG	1 cut(s)	1247
ApeKI	GCWGC	5 cut(s)	211, 578, 656, 659, 668
ApoI	RAATTY	2 cut(s)	231, 494
AseI	ATTAAT	1 cut(s)	840
AspS9I	GGNCC	2 cut(s)	980, 1252
AsuHPI	GGTGA	2 cut(s)	104, 792
AvaI	CYCGRG	1 cut(s)	1247
AvaII	GGWCC	2 cut(s)	980, 1252
AxyI	CCTNAGG	1 cut(s)	900
BaeGI	GKGCMC	1 cut(s)	1248
BanI	GGYRCC	2 cut(s)	502, 1179
Bbv12I	GWGCWC	2 cut(s)	106, 196
BbvI	GCAGC	5 cut(s)	198, 590, 643, 646, 655
BccI	CCATC	4 cut(s)	240, 379, 811, 886
BcgI	CGANNNNNNTGC	2 cut(s)	1220, 1254
BciT130I	CCWGG	1 cut(s)	180
BclI	TGATCA	1 cut(s)	934
BcoDI	GTCTC	1 cut(s)	231
BfaI	CTAG	4 cut(s)	414, 606, 795, 1077
BfmI	CTRYAG	1 cut(s)	212
BisI	GCNGC	6 cut(s)	212, 579, 657, 660, 669, 1183
BlsI	GCNGC	6 cut(s)	213, 580, 658, 661, 670, 1184
BmcAI	AGTACT	1 cut(s)	348
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	2 cut(s)	980, 1252
BmeRI	GACNNNNNGTC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	1247
BmgT120I	GGNCC	2 cut(s)	980, 1252
BmiI	GGNNCC	2 cut(s)	504, 1181
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	1204, 1226
BpmI	CTGGAG	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	90
BsaBI	GATNNNNATC	3 cut(s)	42, 250, 802
BsaJI	CCNNGG	5 cut(s)	178, 260, 673, 1186, 1248
Bsc4I	CCNNNNNNNGG	5 cut(s)	620, 884, 977, 1064, 1231
Bse1I	ACTGG	2 cut(s)	354, 959
Bse21I	CCTNAGG	1 cut(s)	900
Bse3DI	GCAATG	1 cut(s)	597
Bse8I	GATNNNNATC	3 cut(s)	42, 250, 802
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	5 cut(s)	178, 260, 673, 1186, 1248
BseGI	GGATG	2 cut(s)	196, 803
BseJI	GATNNNNATC	3 cut(s)	42, 250, 802
BseLI	CCNNNNNNNGG	5 cut(s)	620, 884, 977, 1064, 1231
BseMI	GCAATG	1 cut(s)	597
BseMII	CTCAG	2 cut(s)	734, 914
BseNI	ACTGG	2 cut(s)	354, 959
BseRI	GAGGAG	2 cut(s)	246, 422
BseSI	GKGCMC	1 cut(s)	1248
BseXI	GCAGC	5 cut(s)	198, 590, 643, 646, 655
BseYI	CCCAGC	2 cut(s)	296, 620
BsgI	GTGCAG	1 cut(s)	597
BshNI	GGYRCC	2 cut(s)	502, 1179
BsiHKAI	GWGCWC	2 cut(s)	106, 196
BsiHKCI	CYCGRG	1 cut(s)	1247
BslFI	GGGAC	2 cut(s)	637, 936
BslI	CCNNNNNNNGG	5 cut(s)	620, 884, 977, 1064, 1231
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	637, 936
BsmI	GAATGC	2 cut(s)	954, 1264
BsoBI	CYCGRG	1 cut(s)	1247
Bsp1286I	GDGCHC	3 cut(s)	106, 196, 1248
Bsp1407I	TGTACA	1 cut(s)	427
Bsp143I	GATC	5 cut(s)	109, 778, 797, 820, 934
Bsp19I	CCATGG	1 cut(s)	1186
BspACI	CCGC	4 cut(s)	4, 830, 873, 1183
BspCNI	CTCAG	2 cut(s)	735, 913
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	2 cut(s)	504, 1181
BspMAI	CTGCAG	1 cut(s)	216
BspPI	GGATC	2 cut(s)	773, 815
BspT107I	GGYRCC	2 cut(s)	502, 1179
BsrBI	CCGCTC	1 cut(s)	875
BsrDI	GCAATG	1 cut(s)	597
BsrGI	TGTACA	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	354, 959
BssECI	CCNNGG	5 cut(s)	178, 260, 673, 1186, 1248
BssMI	GATC	5 cut(s)	109, 778, 797, 820, 934
BssT1I	CCWWGG	2 cut(s)	673, 1186
Bst2UI	CCWGG	1 cut(s)	180
Bst6I	CTCTTC	1 cut(s)	456
BstAUI	TGTACA	1 cut(s)	427
BstDEI	CTNAG	4 cut(s)	743, 900, 1137, 1263
BstDSI	CCRYGG	1 cut(s)	1186
BstF5I	GGATG	2 cut(s)	196, 803
BstKTI	GATC	5 cut(s)	112, 781, 800, 823, 937
BstMAI	GTCTC	1 cut(s)	231
BstMBI	GATC	5 cut(s)	109, 778, 797, 820, 934
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 200, 665, 668, 677
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	212
BstSLI	GKGCMC	1 cut(s)	1248
BstV1I	GCAGC	5 cut(s)	198, 590, 643, 646, 655
BstX2I	RGATCY	2 cut(s)	778, 820
BstYI	RGATCY	2 cut(s)	778, 820
Bsu36I	CCTNAGG	1 cut(s)	900
BtgI	CCRYGG	1 cut(s)	1186
BtsCI	GGATG	2 cut(s)	196, 803
BtsI	GCAGTG	2 cut(s)	580, 795
BtsIMutI	CAGTG	2 cut(s)	580, 795
CaiI	CAGNNNCTG	2 cut(s)	161, 742
CciI	TCATGA	1 cut(s)	684
Cfr13I	GGNCC	2 cut(s)	980, 1252
Csp6I	GTAC	4 cut(s)	269, 347, 428, 483
CviQI	GTAC	4 cut(s)	269, 347, 428, 483
DdeI	CTNAG	4 cut(s)	743, 900, 1137, 1263
DpnI	GATC	5 cut(s)	111, 780, 799, 822, 936
DpnII	GATC	5 cut(s)	109, 778, 797, 820, 934
DriI	GACNNNNNGTC	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	456
Eam1105I	GACNNNNNGTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	2 cut(s)	673, 1186
Eco32I	GATATC	1 cut(s)	1000
Eco47I	GGWCC	2 cut(s)	980, 1252
Eco57I	CTGAAG	1 cut(s)	18
Eco81I	CCTNAGG	1 cut(s)	900
Eco88I	CYCGRG	1 cut(s)	1247
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	178
EcoRV	GATATC	1 cut(s)	1000
EcoT14I	CCWWGG	2 cut(s)	673, 1186
EcoT22I	ATGCAT	2 cut(s)	549, 1219
ErhI	CCWWGG	2 cut(s)	673, 1186
FaqI	GGGAC	2 cut(s)	637, 936
FauI	CCCGC	1 cut(s)	837
FbaI	TGATCA	1 cut(s)	934
Fnu4HI	GCNGC	6 cut(s)	212, 579, 657, 660, 669, 1183
FokI	GGATG	2 cut(s)	183, 790
Fsp4HI	GCNGC	6 cut(s)	212, 579, 657, 660, 669, 1183
FspBI	CTAG	4 cut(s)	414, 606, 795, 1077
GluI	GCNGC	6 cut(s)	212, 579, 657, 660, 669, 1183
GsaI	CCCAGC	2 cut(s)	300, 624
GsuI	CTGGAG	1 cut(s)	540
HincII	GTYRAC	1 cut(s)	870
HindII	GTYRAC	1 cut(s)	870
HindIII	AAGCTT	1 cut(s)	1015
HphI	GGTGA	2 cut(s)	104, 792
Hpy166II	GTNNAC	3 cut(s)	527, 870, 887
Hpy188III	TCNNGA	4 cut(s)	107, 150, 685, 1255
Hpy8I	GTNNAC	3 cut(s)	527, 870, 887
HpyAV	CCTTC	4 cut(s)	544, 981, 1063, 1114
HpyCH4V	TGCA	8 cut(s)	13, 214, 547, 578, 680, 860, 1155, 1217
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 200, 665, 668, 677
HpyF3I	CTNAG	4 cut(s)	743, 900, 1137, 1263
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	5 cut(s)	109, 778, 797, 820, 934
LmnI	GCTCC	2 cut(s)	880, 1190
Lsp1109I	GCAGC	5 cut(s)	198, 590, 643, 646, 655
LweI	GCATC	2 cut(s)	1204, 1226
MaeI	CTAG	4 cut(s)	414, 606, 795, 1077
MaeIII	GTNAC	7 cut(s)	84, 138, 339, 416, 772, 790, 1112
MalI	GATC	5 cut(s)	111, 780, 799, 822, 936
MbiI	CCGCTC	1 cut(s)	875
MboI	GATC	5 cut(s)	109, 778, 797, 820, 934
MboII	GAAGA	3 cut(s)	314, 473, 479
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	2 cut(s)	778, 820
MhlI	GDGCHC	3 cut(s)	106, 196, 1248
MluCI	AATT	7 cut(s)	231, 240, 477, 494, 725, 767, 1195
MlyI	GAGTC	4 cut(s)	71, 419, 619, 1043
MmeI	TCCRAC	4 cut(s)	51, 958, 1231, 1249
Mph1103I	ATGCAT	2 cut(s)	549, 1219
MseI	TTAA	6 cut(s)	42, 57, 239, 510, 840, 1297
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	2 cut(s)	211, 620
MspR9I	CCNGG	1 cut(s)	180
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	2 cut(s)	954, 1264
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	5 cut(s)	10, 200, 665, 668, 677
NcoI	CCATGG	1 cut(s)	1186
NdeII	GATC	5 cut(s)	109, 778, 797, 820, 934
NlaIV	GGNNCC	2 cut(s)	504, 1181
NmuCI	GTSAC	4 cut(s)	84, 138, 416, 790
NsiI	ATGCAT	2 cut(s)	549, 1219
PagI	TCATGA	1 cut(s)	684
PctI	GAATGC	2 cut(s)	954, 1264
PfeI	GAWTC	6 cut(s)	514, 733, 739, 1021, 1100, 1127
PflMI	CCANNNNNTGG	2 cut(s)	620, 884
PkrI	GCNGC	6 cut(s)	213, 580, 658, 661, 670, 1184
PleI	GAGTC	4 cut(s)	71, 418, 619, 1043
PpsI	GAGTC	4 cut(s)	71, 418, 619, 1043
PshBI	ATTAAT	1 cut(s)	840
PsiI	TTATAA	1 cut(s)	1011
Psp6I	CCWGG	1 cut(s)	178
PspFI	CCCAGC	2 cut(s)	296, 620
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	504, 1181
PspPI	GGNCC	2 cut(s)	980, 1252
PstI	CTGCAG	1 cut(s)	216
PstNI	CAGNNNCTG	2 cut(s)	161, 742
PsuI	RGATCY	2 cut(s)	778, 820
PvuII	CAGCTG	2 cut(s)	211, 620
RsaI	GTAC	4 cut(s)	270, 348, 429, 484
RsaNI	GTAC	4 cut(s)	269, 347, 428, 483
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	6 cut(s)	42, 57, 239, 510, 840, 1297
SatI	GCNGC	6 cut(s)	212, 579, 657, 660, 669, 1183
Sau3AI	GATC	5 cut(s)	109, 778, 797, 820, 934
Sau96I	GGNCC	2 cut(s)	980, 1252
ScaI	AGTACT	1 cut(s)	348
SchI	GAGTC	4 cut(s)	71, 419, 619, 1043
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	3 cut(s)	106, 196, 1248
SfaNI	GCATC	2 cut(s)	1204, 1226
SfcI	CTRYAG	1 cut(s)	212
SinI	GGWCC	2 cut(s)	980, 1252
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	7 cut(s)	231, 240, 477, 494, 725, 767, 1195
SsiI	CCGC	4 cut(s)	4, 830, 873, 1183
SspMI	CTAG	4 cut(s)	414, 606, 795, 1077
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	2 cut(s)	673, 1186
TaqI	TCGA	1 cut(s)	440
TasI	AATT	7 cut(s)	231, 240, 477, 494, 725, 767, 1195
TatI	WGTACW	3 cut(s)	268, 346, 427
TauI	GCSGC	1 cut(s)	1185
TfiI	GAWTC	6 cut(s)	514, 733, 739, 1021, 1100, 1127
Tru1I	TTAA	6 cut(s)	42, 57, 239, 510, 840, 1297
Tru9I	TTAA	6 cut(s)	42, 57, 239, 510, 840, 1297
TscAI	CASTG	2 cut(s)	580, 795
TseFI	GTSAC	4 cut(s)	84, 138, 416, 790
TseI	GCWGC	5 cut(s)	211, 578, 656, 659, 668
Tsp45I	GTSAC	4 cut(s)	84, 138, 416, 790
TspDTI	ATGAA	9 cut(s)	135, 487, 701, 714, 738, 804, 1160, 1191, 1286
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	2 cut(s)	580, 795
Van91I	CCANNNNNTGG	2 cut(s)	620, 884
VpaK11BI	GGWCC	2 cut(s)	980, 1252
VspI	ATTAAT	1 cut(s)	840
XapI	RAATTY	2 cut(s)	231, 494
XspI	CTAG	4 cut(s)	414, 606, 795, 1077
ZrmI	AGTACT	1 cut(s)	348
Zsp2I	ATGCAT	2 cut(s)	549, 1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.