Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008745

Physical Location & Seq

Genomic Coordinates Reverse (-)

731808 .. 735409

Gene Structure 3602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g01270.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCGGGGATTGCACAAAACGAAAAGGATTTCTTGGGCTTCAGATGTTAATCTTTGTCAGGTAAAGCTATTTCTCTTGGAGGAATCTCCTTCGCAAGTTGGGCTGAGCGCTCAAGATGACCTCCAAGCAAAGGCATCTTGGCCATCACATTCATCTGGAACAGGCTCAGATGACACTCTACCCCCTGGATTTGAGGGAGCTCATCCGGCAAATCAGCCGCAGATTGACTTGTCTCAAATTCCTTTGATCAAATGGAGATGCCCTCCTAAGGTTGTACTAAACTTCACTTGGCAAGTGGTTTCTGGGGAAGAAAGCAAAGAGATGGAGATTCAAAATCAGAGAGAGATAAGAGTACTGGAAGCTGTTTATCCACGGCCATCTGCCATTCCCTTAAACCCCTCTGTTTTGGCAGATGTTGAAGACTCTAGTCATGCTGGTGGGCAACCTCTTATCATACCTATTACTCCTATTGAAGACGAAGATGCAGGAGGTGAAACATCATCTGAATCCGTGGAACCGTTTAACATTTCCACAAGCTCGCAGTCCTTTCTATCCGTTCAGGGAATTTCGGCTCCATCTCAAAACAATATTCCTAACAATGGAAACCACATGCCTGCAACACTTGGAATGCCTATTGCAGCGGAACCTGATGTTGTAGCTGCTGCCCTTGGTGCAATTGTGAATAACAATGAGCACGGAAATATGATTGATCATGAATTGCTCATTAAGATTCTCAGCAACCCGAAAATGATTGAGAAATTGGTTACAGATCAACAACCAATAACAAGGCCACCCCAAATGGGCGTATCAGATTCATCTCACATCGATCAGGACAGAAATCAGCACACCTTCAGCAAGTGGACATTTCTATCCCCCACCAAATGTTGCTGGAATGGGACATTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

303

Amino Acids

32.86

Weight (kDa)

4.92

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19860 AT1G19860
fragaria_vesca	FvH4_2g38810 FvH4_2g38810 FvH4_2g38810 FvH4_2g38810
malus_domestica	MD08G1015700.v1.1 MD15G1014600.v1.1
prunus_persica	Prupe.1G368900_v2.0.a1
pyrus_communis	pycom08g01370 pycom15g01270
rosa_chinensis	RchiOBHm_Chr6g0302461
rosa_laevigata	RLG00000011169
rosa_multiflora	Rmu_co8159708.1_g000001 Rmu_co8376349.1_g000001 Rmu_sc0011021.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165750
rosa_rugosa	Rorug06G0314400
rosa_samantha	Rh6AG427500 Rh6BG475200 Rh6CG439600 Rh6DG426600
rosa_wichuraiana	Rw6G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	4, 218, 641
AcoI	YGGCCR	2 cut(s)	140, 374
AcsI	RAATTY	2 cut(s)	237, 564
AcuI	CTGAAG	2 cut(s)	24, 835
AfaI	GTAC	2 cut(s)	276, 354
AfeI	AGCGCT	1 cut(s)	109
AfiI	CCNNNNNNNGG	4 cut(s)	130, 268, 599, 800
AgsI	TTSAA	3 cut(s)	332, 419, 473
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	5 cut(s)	67, 200, 362, 537, 659
AluI	AGCT	5 cut(s)	67, 200, 362, 537, 659
Alw21I	GWGCWC	2 cut(s)	202, 696
Alw26I	GTCTC	1 cut(s)	237
Aor51HI	AGCGCT	1 cut(s)	109
AoxI	GGCC	3 cut(s)	140, 374, 788
ApeKI	GCWGC	3 cut(s)	638, 659, 662
ApoI	RAATTY	2 cut(s)	237, 564
AspLEI	GCGC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	503
AxyI	CCTNAGG	1 cut(s)	267
BalI	TGGCCA	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	202
BbsI	GAAGAC	2 cut(s)	426, 480
Bbv12I	GWGCWC	2 cut(s)	202, 696
BbvI	GCAGC	3 cut(s)	646, 649, 650
BccI	CCATC	4 cut(s)	151, 316, 385, 583
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	186
BclI	TGATCA	2 cut(s)	246, 709
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	4 cut(s)	218, 639, 660, 663
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	4 cut(s)	219, 640, 661, 664
BmcAI	AGTACT	1 cut(s)	354
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	3 cut(s)	516, 573, 645
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	3 cut(s)	143, 248, 472
BoxI	GACNNNNGTC	1 cut(s)	426
BpiI	GAAGAC	2 cut(s)	426, 480
BplI	GAGNNNNNCTC	2 cut(s)	247, 279
Bpu1102I	GCTNAGC	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	96
Bsa29I	ATCGAT	1 cut(s)	825
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	4 cut(s)	184, 371, 510, 667
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 268, 599, 800
Bse1I	ACTGG	1 cut(s)	360
Bse21I	CCTNAGG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	186
BseCI	ATCGAT	1 cut(s)	825
BseDI	CCNNGG	4 cut(s)	184, 371, 510, 667
BseGI	GGATG	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	4 cut(s)	130, 268, 599, 800
BseMII	CTCAG	3 cut(s)	95, 180, 748
BseNI	ACTGG	1 cut(s)	360
BseXI	GCAGC	3 cut(s)	646, 649, 650
BshFI	GGCC	3 cut(s)	142, 376, 790
BshVI	ATCGAT	1 cut(s)	825
BsiHKAI	GWGCWC	2 cut(s)	202, 696
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	4 cut(s)	130, 268, 599, 800
BsmAI	GTCTC	1 cut(s)	237
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	3 cut(s)	142, 376, 790
Bsp1286I	GDGCHC	2 cut(s)	202, 696
Bsp143I	GATC	4 cut(s)	246, 709, 769, 826
Bsp1720I	GCTNAGC	1 cut(s)	104
BspACI	CCGC	3 cut(s)	4, 218, 641
BspANI	GGCC	3 cut(s)	142, 376, 790
BspCNI	CTCAG	3 cut(s)	96, 179, 747
BspDI	ATCGAT	1 cut(s)	825
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	3 cut(s)	516, 573, 645
BsrI	ACTGG	1 cut(s)	360
BssECI	CCNNGG	4 cut(s)	184, 371, 510, 667
BssMI	GATC	4 cut(s)	246, 709, 769, 826
BssT1I	CCWWGG	1 cut(s)	667
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	519
BstC8I	GCNNGC	2 cut(s)	539, 615
BstDEI	CTNAG	4 cut(s)	104, 166, 267, 734
BstDSI	CCRYGG	2 cut(s)	371, 510
BstF5I	GGATG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	4 cut(s)	249, 712, 772, 829
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	4 cut(s)	246, 709, 769, 826
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 100, 206, 671
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	613
BstPAI	GACNNNNGTC	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	184
BstV1I	GCAGC	3 cut(s)	646, 649, 650
BstV2I	GAAGAC	2 cut(s)	426, 480
Bsu15I	ATCGAT	1 cut(s)	825
Bsu36I	CCTNAGG	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	142, 376, 790
BsuTUI	ATCGAT	1 cut(s)	825
BtgI	CCRYGG	2 cut(s)	371, 510
BtsCI	GGATG	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	539, 615
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	1 cut(s)	110
ClaI	ATCGAT	1 cut(s)	825
Csp6I	GTAC	2 cut(s)	275, 353
CviAII	CATG	3 cut(s)	431, 610, 713
CviQI	GTAC	2 cut(s)	275, 353
DdeI	CTNAG	4 cut(s)	104, 166, 267, 734
DpnI	GATC	4 cut(s)	248, 711, 771, 828
DpnII	GATC	4 cut(s)	246, 709, 769, 826
EaeI	YGGCCR	2 cut(s)	140, 374
Ecl136II	GAGCTC	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	667
Eco24I	GRGCYC	1 cut(s)	202
Eco47III	AGCGCT	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	24, 835
Eco81I	CCTNAGG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	667
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	667
FaeI	CATG	3 cut(s)	434, 613, 716
FaiI	YATR	5 cut(s)	432, 455, 611, 704, 714
FalI	AAGNNNNNCTT	2 cut(s)	16, 48
FatI	CATG	3 cut(s)	430, 609, 712
FbaI	TGATCA	2 cut(s)	246, 709
Fnu4HI	GCNGC	4 cut(s)	218, 639, 660, 663
FokI	GGATG	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	4 cut(s)	218, 639, 660, 663
FspBI	CTAG	1 cut(s)	426
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	4 cut(s)	218, 639, 660, 663
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	142, 376, 790
HapII	CCGG	1 cut(s)	206
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	3 cut(s)	434, 613, 716
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	6 cut(s)	83, 328, 422, 506, 730, 812
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	1 cut(s)	861
Hpy188I	TCNGA	5 cut(s)	43, 169, 339, 505, 811
Hpy188III	TCNNGA	5 cut(s)	113, 156, 713, 830, 906
Hpy8I	GTNNAC	1 cut(s)	861
HpyAV	CCTTC	2 cut(s)	99, 859
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4V	TGCA	5 cut(s)	13, 485, 617, 638, 674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 100, 206, 671
HpyF3I	CTNAG	4 cut(s)	104, 166, 267, 734
Hsp92II	CATG	3 cut(s)	434, 613, 716
HspAI	GCGC	1 cut(s)	108
Ksp22I	TGATCA	2 cut(s)	246, 709
Kzo9I	GATC	4 cut(s)	246, 709, 769, 826
LmnI	GCTCC	2 cut(s)	197, 577
Lsp1109I	GCAGC	3 cut(s)	646, 649, 650
LweI	GCATC	3 cut(s)	143, 248, 472
MaeI	CTAG	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	4 cut(s)	248, 711, 771, 828
MboI	GATC	4 cut(s)	246, 709, 769, 826
MboII	GAAGA	4 cut(s)	320, 431, 485, 491
MfeI	CAATTG	1 cut(s)	675
MhlI	GDGCHC	2 cut(s)	202, 696
MlsI	TGGCCA	1 cut(s)	142
MluCI	AATT	5 cut(s)	237, 564, 675, 716, 758
MluNI	TGGCCA	1 cut(s)	142
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	7 cut(s)	73, 131, 187, 273, 409, 456, 482
Mox20I	TGGCCA	1 cut(s)	142
MscI	TGGCCA	1 cut(s)	142
MseI	TTAA	4 cut(s)	48, 392, 522, 726
MslI	CAYNNNNRTG	1 cut(s)	435
Msp20I	TGGCCA	1 cut(s)	142
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	4 cut(s)	10, 100, 206, 671
NdeII	GATC	4 cut(s)	246, 709, 769, 826
NlaIII	CATG	3 cut(s)	434, 613, 716
NlaIV	GGNNCC	3 cut(s)	516, 573, 645
NspI	RCATGY	1 cut(s)	613
PagI	TCATGA	1 cut(s)	712
PctI	GAATGC	1 cut(s)	633
PfeI	GAWTC	5 cut(s)	83, 328, 506, 730, 812
PkrI	GCNGC	4 cut(s)	219, 640, 661, 664
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PshAI	GACNNNNGTC	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	3 cut(s)	516, 573, 645
RsaI	GTAC	2 cut(s)	276, 354
RsaNI	GTAC	2 cut(s)	275, 353
RseI	CAYNNNNRTG	1 cut(s)	435
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	4 cut(s)	48, 392, 522, 726
SatI	GCNGC	4 cut(s)	218, 639, 660, 663
Sau3AI	GATC	4 cut(s)	246, 709, 769, 826
ScaI	AGTACT	1 cut(s)	354
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	202, 696
SfaNI	GCATC	3 cut(s)	143, 248, 472
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	5 cut(s)	237, 564, 675, 716, 758
SsiI	CCGC	3 cut(s)	4, 218, 641
SspI	AATATT	1 cut(s)	589
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	667
TaaI	ACNGT	1 cut(s)	519
TaqI	TCGA	1 cut(s)	825
TasI	AATT	5 cut(s)	237, 564, 675, 716, 758
TatI	WGTACW	2 cut(s)	274, 352
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	5 cut(s)	83, 328, 506, 730, 812
Tru1I	TTAA	4 cut(s)	48, 392, 522, 726
Tru9I	TTAA	4 cut(s)	48, 392, 522, 726
TseI	GCWGC	3 cut(s)	638, 659, 662
TspDTI	ATGAA	3 cut(s)	141, 729, 804
TspGWI	ACGGA	3 cut(s)	499, 544, 711
XapI	RAATTY	2 cut(s)	237, 564
XceI	RCATGY	1 cut(s)	613
XspI	CTAG	1 cut(s)	426
ZrmI	AGTACT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.