Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008745

Physical Location & Seq

Genomic Coordinates Reverse (-)

1067629 .. 1068279

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g01370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCCTATTGCAGCAGAACCTGATGTTGTAGCTGCTGCCCTTGGTGCAATTGTGAATAGCAACGAGCACGGAAATATGATTGACCATGAATTGCTCATTAAGATTCTCAGCAACCCGAAAATGATTGAGCAATTGGTTACAGATCCACAACCAATGACAAGGCCACCCCCAATGGGCATATCAGATCCATCTCACATGATCAGGACAGAAATCAACACACCTTCATCAAGTGGACATTTCTATCCTCAACCAAATATGGGACATATTCCTGATGCACGACCACCTCCGCCTGCAGGAATTCCAGTTCATTCTTCGCCTTCTGTTGGACCACCCCCACCAGCAAAGGACATCAACTATTATAAAAGCTTGATTCAACAACATGGAGGAGACCGGCATGACAACTTTCCACCATTTGGTAACCGACACAGCGACCATTCAGTGGTAAACCAAGAATCTAATAATAACTACAAATCAAGAGATTCAAAACCCAAGAATATGAAGCCTTGCATATTCTTCAACAGTTCAAGGGGATGCAACAAAGGAGCAAATTGCACGTTCCAGCATGATGCATCGTTCCAGCCACGAGGTAGTAGTGTGCCGGAGGTGCACAAGGCAAAGAGAATGAAAATGGATAGGGAGATCAGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

217

Amino Acids

23.73

Weight (kDa)

8.44

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19860 AT1G19860
fragaria_vesca	FvH4_2g38810 FvH4_2g38810 FvH4_2g38810 FvH4_2g38810
malus_domestica	MD08G1015700.v1.1 MD15G1014600.v1.1
prunus_persica	Prupe.1G368900_v2.0.a1
pyrus_communis	pycom08g01370 pycom15g01270
rosa_chinensis	RchiOBHm_Chr6g0302461
rosa_laevigata	RLG00000011169
rosa_multiflora	Rmu_co8159708.1_g000001 Rmu_co8376349.1_g000001 Rmu_sc0011021.1_g000013
rosa_roxburghii	Rroxscaffold_7G00165750
rosa_rugosa	Rorug06G0314400
rosa_samantha	Rh6AG427500 Rh6BG475200 Rh6CG439600 Rh6DG426600
rosa_wichuraiana	Rw6G036980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AccB7I	CCANNNNNTGG	2 cut(s)	413, 439
AciI	CCGC	1 cut(s)	287
AclWI	GGATC	2 cut(s)	137, 179
AcsI	RAATTY	1 cut(s)	297
AfiI	CCNNNNNNNGG	6 cut(s)	173, 257, 293, 323, 413, 439
AgsI	TTSAA	4 cut(s)	374, 483, 517, 525
AloI	GAACNNNNNNTCC	2 cut(s)	288, 320
AluBI	AGCT	2 cut(s)	32, 366
AluI	AGCT	2 cut(s)	32, 366
Alw21I	GWGCWC	2 cut(s)	69, 609
Alw26I	GTCTC	1 cut(s)	381
Alw44I	GTGCAC	1 cut(s)	605
AlwI	GGATC	2 cut(s)	137, 179
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	161
ApaLI	GTGCAC	1 cut(s)	605
ApeKI	GCWGC	3 cut(s)	11, 32, 35
ApoI	RAATTY	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	609
BauI	CACGAG	1 cut(s)	582
Bbv12I	GWGCWC	2 cut(s)	69, 609
BbvI	GCAGC	3 cut(s)	19, 22, 23
BccI	CCATC	1 cut(s)	196
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	3 cut(s)	12, 33, 36
BlsI	GCNGC	3 cut(s)	13, 34, 37
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmsI	GCATC	4 cut(s)	262, 521, 556, 578
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	6 cut(s)	173, 257, 293, 323, 413, 439
Bse118I	RCCGGY	1 cut(s)	390
Bse1I	ACTGG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	536
BseLI	CCNNNNNNNGG	6 cut(s)	173, 257, 293, 323, 413, 439
BseMII	CTCAG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	399
BseSI	GKGCMC	1 cut(s)	609
BseXI	GCAGC	3 cut(s)	19, 22, 23
BshFI	GGCC	1 cut(s)	163
BsiHKAI	GWGCWC	2 cut(s)	69, 609
BsiSI	CCGG	2 cut(s)	391, 599
BslFI	GGGAC	1 cut(s)	273
BslI	CCNNNNNNNGG	6 cut(s)	173, 257, 293, 323, 413, 439
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	163
Bso31I	GGTCTC	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	69, 609
Bsp143I	GATC	4 cut(s)	142, 184, 198, 639
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	120
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	2 cut(s)	137, 179
BspTNI	GGTCTC	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	4 cut(s)	142, 184, 198, 639
BssSI	CACGAG	1 cut(s)	582
BssT1I	CCWWGG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	582
Bst4CI	ACNGT	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	107
BstEII	GGTNACC	1 cut(s)	416
BstF5I	GGATG	1 cut(s)	536
BstKTI	GATC	4 cut(s)	145, 187, 201, 642
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	4 cut(s)	142, 184, 198, 639
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 604
BstPI	GGTNACC	1 cut(s)	416
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	609
BstV1I	GCAGC	3 cut(s)	19, 22, 23
BstX2I	RGATCY	2 cut(s)	142, 184
BstYI	RGATCY	2 cut(s)	142, 184
BsuRI	GGCC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	536
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	1 cut(s)	291
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	326
CviAII	CATG	5 cut(s)	86, 196, 380, 395, 563
CviJI	RGCY	5 cut(s)	32, 163, 366, 502, 580
CviKI_1	RGCY	5 cut(s)	32, 163, 366, 502, 580
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	4 cut(s)	144, 186, 200, 641
DpnII	GATC	4 cut(s)	142, 184, 198, 639
EciI	GGCGGA	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	326
Eco91I	GGTNACC	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	5 cut(s)	89, 199, 383, 398, 566
FaqI	GGGAC	1 cut(s)	273
FatI	CATG	5 cut(s)	85, 195, 379, 394, 562
FbaI	TGATCA	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	12, 33, 36
FokI	GGATG	1 cut(s)	543
Fsp4HI	GCNGC	3 cut(s)	12, 33, 36
GluI	GCNGC	3 cut(s)	12, 33, 36
HaeIII	GGCC	1 cut(s)	163
HapII	CCGG	2 cut(s)	391, 599
Hin1II	CATG	5 cut(s)	89, 199, 383, 398, 566
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	4 cut(s)	103, 370, 452, 479
HpaII	CCGG	2 cut(s)	391, 599
Hpy166II	GTNNAC	3 cut(s)	233, 445, 607
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	3 cut(s)	202, 269, 474
Hpy8I	GTNNAC	3 cut(s)	233, 445, 607
HpyAV	CCTTC	2 cut(s)	231, 327
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	9 cut(s)	11, 47, 275, 293, 507, 534, 552, 569, 607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 604
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	554
Hsp92II	CATG	5 cut(s)	89, 199, 383, 398, 566
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	4 cut(s)	142, 184, 198, 639
LmnI	GCTCC	1 cut(s)	542
Lsp1109I	GCAGC	3 cut(s)	19, 22, 23
LweI	GCATC	4 cut(s)	262, 521, 556, 578
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	2 cut(s)	136, 416
MalI	GATC	4 cut(s)	144, 186, 200, 641
MboI	GATC	4 cut(s)	142, 184, 198, 639
MboII	GAAGA	2 cut(s)	303, 505
MfeI	CAATTG	2 cut(s)	48, 131
MflI	RGATCY	2 cut(s)	142, 184
MhlI	GDGCHC	2 cut(s)	69, 609
MluCI	AATT	5 cut(s)	48, 89, 131, 297, 547
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	5 cut(s)	255, 294, 377, 578, 595
Mph1103I	ATGCAT	1 cut(s)	571
MseI	TTAA	2 cut(s)	99, 649
MspI	CCGG	2 cut(s)	391, 599
MunI	CAATTG	2 cut(s)	48, 131
MwoI	GCNNNNNNNGC	2 cut(s)	44, 604
NdeII	GATC	4 cut(s)	142, 184, 198, 639
NlaIII	CATG	5 cut(s)	89, 199, 383, 398, 566
NsiI	ATGCAT	1 cut(s)	571
PfeI	GAWTC	4 cut(s)	103, 370, 452, 479
PflMI	CCANNNNNTGG	2 cut(s)	413, 439
PkrI	GCNGC	3 cut(s)	13, 34, 37
PsiI	TTATAA	1 cut(s)	360
PspEI	GGTNACC	1 cut(s)	416
PspPI	GGNCC	1 cut(s)	326
PstI	CTGCAG	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	2 cut(s)	142, 184
SaqAI	TTAA	2 cut(s)	99, 649
SatI	GCNGC	3 cut(s)	12, 33, 36
Sau3AI	GATC	4 cut(s)	142, 184, 198, 639
Sau96I	GGNCC	1 cut(s)	326
SbfI	CCTGCAGG	1 cut(s)	295
SdaI	CCTGCAGG	1 cut(s)	295
SduI	GDGCHC	2 cut(s)	69, 609
SetI	ASST	8 cut(s)	22, 34, 223, 286, 368, 557, 589, 606
SfaNI	GCATC	4 cut(s)	262, 521, 556, 578
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	326
Sse8387I	CCTGCAGG	1 cut(s)	295
Sse9I	AATT	5 cut(s)	48, 89, 131, 297, 547
SsiI	CCGC	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	1 cut(s)	557
TasI	AATT	5 cut(s)	48, 89, 131, 297, 547
TfiI	GAWTC	4 cut(s)	103, 370, 452, 479
Tru1I	TTAA	2 cut(s)	99, 649
Tru9I	TTAA	2 cut(s)	99, 649
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	3 cut(s)	11, 32, 35
TspDTI	ATGAA	5 cut(s)	102, 213, 296, 512, 638
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	444
Van91I	CCANNNNNTGG	2 cut(s)	413, 439
VneI	GTGCAC	1 cut(s)	605
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.