Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006897

Physical Location & Seq

Genomic Coordinates Forward (+)

6933015 .. 6935053

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGTTGTGAAATCGGTTTCTGGAGATTCGTCGGAACGGGAAAACTGGGAAACGATTTTCAAGAGTTTGGTCAAGATTTTACAGACGAAACAGGACCAGCTTGAGTCGCTTCTCAAAGACAAGAAGATTCTTGAAAGTGAGATCAAGACTAATAACGAAAATTGGCTCTCTGATGTTCGAAATTACGAGGATCAACTCTCTCTGATGATGAAAGAAATTGAAACGACTAAGATGTTTCAGTTACTGGAGACCTATAAAAGCAATCTCTTGTGTGGCTTAAAGGAGAAAGATCGTTCTCTTTGCAATTTGAAACTAGAGCATTCGCTGGATGAGTTAAAAGACTTCAAGGCTTGGTTTGATTTCCTCACTCTGAATACAAATGTGGAGAGTGTAAGTGGCAATTCAGAAGGTACGGCTATTAAGTCATTGGAAGCAAAAATCAGAAAACTGAAACTTGAGTATGAGAAGCTTGCTTCTGAAAAGAAATGTGAGGTATCTGATCTTTTACGAGAAAACGGGTTTGCGTGGAATCAGTTCAAATGTATCGAGAGTGAATTCACTGATAAGTTAAAGAGGAAAGATGATGAGATCGTTCAAGCGAATACGAAAATTTCCAGTCTTATATCTTATCAAGAGCAGCTTCAGTCATCTAATCAAGAGAAGGATGAGACTATCTCAAGGTTAAAGGCTAAGATGGCTGAAATGGAGACCAATTCTACTAAGAAAGATGAGGAAATCTCAAAACTCACAAGGGATCTAGAGTCTGCAAAGAAGTCTCGTGGGTTCACACCGGTTTTAACTCGATGCACCAAACTTGAAAAGCGTAGCAATGGAAATACGGTGGGATCTCATATATCTACTAAGAAAGACAAGTCTGCTGCATCAACAACAAATGAAAAGGTAAGCAAAAGCTCAAAGAGGAAAAGAGCGAAGAACATGACACCGGTCTCGGTTTCAGAAGTCCCAAAGCTCTTCACTTCGACTTTTAGGCTTCCCAAGTTGAAGTCTCCATCTAATGGAGCCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

39.1

Weight (kDa)

9.12

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19980
fragaria_vesca	FvH4_2g38440
malus_domestica	MD00G1092800.v1.1 MD08G1013200.v1.1 MD15G1012000.v1.1
prunus_persica	Prupe.1G365300_v2.0.a1
pyrus_communis	pycom08g01130 pycom15g01070
rosa_chinensis	RchiOBHm_Chr6g0302861
rosa_laevigata	RLG00000001570 RLG00000011130
rosa_multiflora	Rmu_ssc0000141.1_g000013 Rmu_ssc0000460.1_g000010
rosa_roxburghii	Rroxscaffold_2G00146980 Rroxscaffold_4G00295210 Rroxscaffold_7G00165210 Rroxscaffold_7G00165230
rosa_rugosa	Rorug06G0317800
rosa_samantha	Rh1BG155400 Rh6AG431100 Rh6BG471500 Rh6BG471600 Rh6CG443500 Rh6DG430200 Rh7CG342300
rosa_wichuraiana	Rw6G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1016
AclWI	GGATC	3 cut(s)	198, 762, 853
AcsI	RAATTY	2 cut(s)	554, 609
AcuI	CTGAAG	1 cut(s)	626
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	1016
AgeI	ACCGGT	2 cut(s)	790, 943
AgsI	TTSAA	9 cut(s)	61, 134, 221, 310, 346, 538, 596, 818, 1003
AluBI	AGCT	5 cut(s)	100, 469, 640, 912, 970
AluI	AGCT	5 cut(s)	100, 469, 640, 912, 970
Alw26I	GTCTC	6 cut(s)	242, 662, 701, 780, 952, 1011
AlwI	GGATC	3 cut(s)	198, 762, 853
AlwNI	CAGNNNCTG	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	637, 878
ApoI	RAATTY	2 cut(s)	554, 609
AsiGI	ACCGGT	2 cut(s)	790, 943
Asp700I	GAANNNNTTC	1 cut(s)	533
AspS9I	GGNCC	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	94
BauI	CACGAG	1 cut(s)	777
BbvI	GCAGC	2 cut(s)	649, 865
BccI	CCATC	2 cut(s)	688, 1018
BceAI	ACGGC	1 cut(s)	429
BcoDI	GTCTC	6 cut(s)	242, 662, 701, 780, 952, 1011
BfaI	CTAG	2 cut(s)	314, 758
BisI	GCNGC	2 cut(s)	638, 879
BlsI	GCNGC	2 cut(s)	639, 880
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	1021
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	2 cut(s)	794, 890
BmuI	ACTGGG	1 cut(s)	55
BoxI	GACNNNNGTC	1 cut(s)	944
BplI	GAGNNNNNCTC	4 cut(s)	659, 691, 722, 754
BpmI	CTGGAG	2 cut(s)	42, 266
Bpu14I	TTCGAA	1 cut(s)	178
BpuEI	CTTGAG	3 cut(s)	122, 476, 661
BsaI	GGTCTC	3 cut(s)	242, 701, 952
BsaWI	WCCGGW	2 cut(s)	790, 943
Bsc4I	CCNNNNNNNGG	1 cut(s)	1016
Bse118I	RCCGGY	2 cut(s)	790, 943
Bse1I	ACTGG	3 cut(s)	50, 249, 615
Bse3DI	GCAATG	1 cut(s)	835
BseGI	GGATG	2 cut(s)	334, 670
BseLI	CCNNNNNNNGG	1 cut(s)	1016
BseMI	GCAATG	1 cut(s)	835
BseNI	ACTGG	3 cut(s)	50, 249, 615
BseXI	GCAGC	2 cut(s)	649, 865
BshTI	ACCGGT	2 cut(s)	790, 943
BsiSI	CCGG	2 cut(s)	791, 944
BslFI	GGGAC	1 cut(s)	947
BslI	CCNNNNNNNGG	1 cut(s)	1016
BsmAI	GTCTC	6 cut(s)	242, 662, 701, 780, 952, 1011
BsmFI	GGGAC	1 cut(s)	947
BsmI	GAATGC	1 cut(s)	319
Bso31I	GGTCTC	3 cut(s)	242, 701, 952
Bsp119I	TTCGAA	1 cut(s)	178
Bsp143I	GATC	7 cut(s)	141, 190, 289, 499, 588, 754, 845
BspLI	GGNNCC	1 cut(s)	1021
BspPI	GGATC	3 cut(s)	198, 762, 853
BspQI	GCTCTTC	1 cut(s)	977
BspT104I	TTCGAA	1 cut(s)	178
BspTNI	GGTCTC	3 cut(s)	242, 701, 952
BsrDI	GCAATG	1 cut(s)	835
BsrFI	RCCGGY	2 cut(s)	790, 943
BsrI	ACTGG	3 cut(s)	50, 249, 615
BssAI	RCCGGY	2 cut(s)	790, 943
BssMI	GATC	7 cut(s)	141, 190, 289, 499, 588, 754, 845
BssSI	CACGAG	1 cut(s)	777
Bst2BI	CACGAG	1 cut(s)	777
Bst4CI	ACNGT	1 cut(s)	841
Bst6I	CTCTTC	1 cut(s)	977
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	4 cut(s)	228, 690, 720, 861
BstF5I	GGATG	2 cut(s)	334, 670
BstKTI	GATC	7 cut(s)	144, 193, 292, 502, 591, 757, 848
BstMAI	GTCTC	6 cut(s)	242, 662, 701, 780, 952, 1011
BstMBI	GATC	7 cut(s)	141, 190, 289, 499, 588, 754, 845
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 695
BstPAI	GACNNNNGTC	1 cut(s)	944
BstV1I	GCAGC	2 cut(s)	649, 865
BstX2I	RGATCY	2 cut(s)	754, 845
BstYI	RGATCY	2 cut(s)	754, 845
BtsCI	GGATG	2 cut(s)	334, 670
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	1 cut(s)	471
CaiI	CAGNNNCTG	1 cut(s)	244
Cfr10I	RCCGGY	2 cut(s)	790, 943
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	411
CspAI	ACCGGT	2 cut(s)	790, 943
CviAII	CATG	1 cut(s)	937
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	4 cut(s)	228, 690, 720, 861
DpnI	GATC	7 cut(s)	143, 192, 291, 501, 590, 756, 847
DpnII	GATC	7 cut(s)	141, 190, 289, 499, 588, 754, 845
Eam1104I	CTCTTC	1 cut(s)	977
EarI	CTCTTC	1 cut(s)	977
Eco31I	GGTCTC	3 cut(s)	242, 701, 952
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	626
EcoRI	GAATTC	1 cut(s)	554
FaeI	CATG	1 cut(s)	940
FaiI	YATR	8 cut(s)	255, 462, 623, 852, 854, 938, 1025, 1027
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FaqI	GGGAC	1 cut(s)	947
FatI	CATG	1 cut(s)	936
Fnu4HI	GCNGC	2 cut(s)	638, 879
FokI	GGATG	2 cut(s)	341, 677
Fsp4HI	GCNGC	2 cut(s)	638, 879
FspBI	CTAG	2 cut(s)	314, 758
GluI	GCNGC	2 cut(s)	638, 879
GsuI	CTGGAG	2 cut(s)	42, 266
HapII	CCGG	2 cut(s)	791, 944
Hin1II	CATG	1 cut(s)	940
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	5 cut(s)	26, 104, 127, 529, 761
HpaII	CCGG	2 cut(s)	791, 944
Hpy166II	GTNNAC	1 cut(s)	786
Hpy188I	TCNGA	9 cut(s)	34, 172, 204, 372, 406, 443, 478, 499, 958
Hpy188III	TCNNGA	9 cut(s)	21, 61, 73, 131, 145, 547, 632, 656, 758
Hpy8I	GTNNAC	1 cut(s)	786
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	401, 655
HpyCH4III	ACNGT	1 cut(s)	841
HpyCH4V	TGCA	4 cut(s)	303, 767, 807, 881
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 695
HpyF3I	CTNAG	4 cut(s)	228, 690, 720, 861
Hsp92II	CATG	1 cut(s)	940
Kzo9I	GATC	7 cut(s)	141, 190, 289, 499, 588, 754, 845
LguI	GCTCTTC	1 cut(s)	977
LmnI	GCTCC	1 cut(s)	1019
LpnPI	CCDG	9 cut(s)	6, 31, 77, 110, 230, 311, 628, 804, 957
Lsp1109I	GCAGC	2 cut(s)	649, 865
LweI	GCATC	2 cut(s)	794, 890
MaeI	CTAG	2 cut(s)	314, 758
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	7 cut(s)	143, 192, 291, 501, 590, 756, 847
MboI	GATC	7 cut(s)	141, 190, 289, 499, 588, 754, 845
MboII	GAAGA	3 cut(s)	136, 943, 964
MflI	RGATCY	2 cut(s)	754, 845
MluCI	AATT	8 cut(s)	160, 181, 216, 304, 400, 554, 609, 712
MlyI	GAGTC	2 cut(s)	113, 770
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	6 cut(s)	181, 374, 484, 567, 724, 912
MroXI	GAANNNNTTC	1 cut(s)	533
MseI	TTAA	6 cut(s)	278, 335, 420, 569, 683, 797
MspI	CCGG	2 cut(s)	791, 944
Mva1269I	GAATGC	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	106, 695
NdeII	GATC	7 cut(s)	141, 190, 289, 499, 588, 754, 845
NlaIII	CATG	1 cut(s)	940
NlaIV	GGNNCC	1 cut(s)	1021
NspV	TTCGAA	1 cut(s)	178
PciSI	GCTCTTC	1 cut(s)	977
PctI	GAATGC	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	3 cut(s)	26, 127, 529
PflMI	CCANNNNNTGG	1 cut(s)	1016
PinAI	ACCGGT	2 cut(s)	790, 943
PkrI	GCNGC	2 cut(s)	639, 880
PleI	GAGTC	2 cut(s)	112, 769
PpsI	GAGTC	2 cut(s)	112, 769
PshAI	GACNNNNGTC	1 cut(s)	944
PspN4I	GGNNCC	1 cut(s)	1021
PspPI	GGNCC	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	244
PsuI	RGATCY	2 cut(s)	754, 845
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SapI	GCTCTTC	1 cut(s)	977
SaqAI	TTAA	6 cut(s)	278, 335, 420, 569, 683, 797
SatI	GCNGC	2 cut(s)	638, 879
Sau3AI	GATC	7 cut(s)	141, 190, 289, 499, 588, 754, 845
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	2 cut(s)	113, 770
SfaNI	GCATC	2 cut(s)	794, 890
SfuI	TTCGAA	1 cut(s)	178
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	3 cut(s)	101, 455, 676
SmoI	CTYRAG	3 cut(s)	101, 455, 676
Sse9I	AATT	8 cut(s)	160, 181, 216, 304, 400, 554, 609, 712
SspMI	CTAG	2 cut(s)	314, 758
TaaI	ACNGT	1 cut(s)	841
TaqI	TCGA	4 cut(s)	178, 546, 802, 980
TasI	AATT	8 cut(s)	160, 181, 216, 304, 400, 554, 609, 712
TfiI	GAWTC	3 cut(s)	26, 127, 529
Tru1I	TTAA	6 cut(s)	278, 335, 420, 569, 683, 797
Tru9I	TTAA	6 cut(s)	278, 335, 420, 569, 683, 797
TscAI	CASTG	1 cut(s)	565
TseI	GCWGC	2 cut(s)	637, 878
TspDTI	ATGAA	2 cut(s)	224, 909
TspRI	CASTG	1 cut(s)	565
Van91I	CCANNNNNTGG	1 cut(s)	1016
VpaK11BI	GGWCC	1 cut(s)	94
XapI	RAATTY	2 cut(s)	554, 609
XbaI	TCTAGA	1 cut(s)	757
XmnI	GAANNNNTTC	1 cut(s)	533
XspI	CTAG	2 cut(s)	314, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.