Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000460.1

Orthogroup ID

OG0006897

Physical Location & Seq

Genomic Coordinates Forward (+)

55384 .. 58542

Gene Structure 3159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000460.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

atggtccagattttacaggagcagcagtccaagctggagacgatggccaaagagcgcaaaatgctcgccgatcggatcagaacggaacacgacaagtggaccttcagcgtcagccaattgcaagatcaaatttctcagttggaggcggatttggttactcaagagaagggtggtgtggttgaggtggccaaattggagttgcttctgggcttgaaggaaagagaggctgttctcttcaaatttcaaaaagaggatataaagagggacttggacgattttataagatgggttgaattgcacgccaaagaatcctctgattcgaaggtaggtggggagagcagtaaacgaaaaggaagaaataatagcaatacaaagttgtccaaaactattaatgaagaaaagcggctttctaaaggtgtggatgatgatctgagaaagctacagcaggaatatgataagcttgctttggaaaagaaaactgaggtatctgcactcttgtctcagaagcaattcgtgtggaatcagtataatcttttggaaaaagactacaccagtaaactaaagagtaagcagtctgaagttgaccaggctgatgaaaagatacaggctcttcttgccagtatggagcaattacagtcctcaaacaaagaaaaggatgataagattgcatcattagagactgatttcaccaagctgaaggaagaaaattccaaagttttaagggaactggagtcgttaagaaagtctgcaagtgcttctgcgactcctgttttgaaccactgttcagcgggaaccagagcatataacttgagaggcaaaaatagtgctcttgatagaagtattgtgacagtcaagaaagagtcatctgctgcacaacttactgatcctcttaagaacaccaaaatggggaggagcagttcaaagagaaatggagatgatgttataacaactgagggaactgtaaagttgttctcgtccagctttaaagtaccaaaagtgaagagtcattgtcctgcatctggcaaatcttcgacatcatcttccagaggggggacacgtattagtgtcacgatggagtatcataaagaaggctcgagaaccacctactatgaacatgaagaggcccaaatcggagattgttgccggatgaagcgagcgcaagggtcctcctatgctgatatcttgctagataaaatctcggacgtcgctatagaaagtgaaattggcgttttggttttggggttttggtcctcctatgttgtcttttatgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

424

Amino Acids

47.79

Weight (kDa)

8.8

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19980
fragaria_vesca	FvH4_2g38440
malus_domestica	MD00G1092800.v1.1 MD08G1013200.v1.1 MD15G1012000.v1.1
prunus_persica	Prupe.1G365300_v2.0.a1
pyrus_communis	pycom08g01130 pycom15g01070
rosa_chinensis	RchiOBHm_Chr6g0302861
rosa_laevigata	RLG00000001570 RLG00000011130
rosa_multiflora	Rmu_ssc0000141.1_g000013 Rmu_ssc0000460.1_g000010
rosa_roxburghii	Rroxscaffold_2G00146980 Rroxscaffold_4G00295210 Rroxscaffold_7G00165210 Rroxscaffold_7G00165230
rosa_rugosa	Rorug06G0317800
rosa_samantha	Rh1BG155400 Rh6AG431100 Rh6BG471500 Rh6BG471600 Rh6CG443500 Rh6DG430200 Rh7CG342300
rosa_wichuraiana	Rw6G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	281, 944
AatII	GACGTC	1 cut(s)	1206
AciI	CCGC	3 cut(s)	146, 403, 788
AclWI	GGATC	2 cut(s)	83, 878
AcoI	YGGCCR	2 cut(s)	45, 186
AcsI	RAATTY	3 cut(s)	129, 239, 706
AcuI	CTGAAG	3 cut(s)	88, 597, 716
AcyI	GRCGYC	1 cut(s)	1203
AfaI	GTAC	1 cut(s)	990
AfiI	CCNNNNNNNGG	3 cut(s)	906, 1019, 1050
AflII	CTTAAG	1 cut(s)	890
AflIII	ACRYGT	1 cut(s)	1055
AgsI	TTSAA	6 cut(s)	214, 238, 245, 293, 775, 921
AjnI	CCWGG	1 cut(s)	585
AjuI	GAANNNNNNNTTGG	2 cut(s)	1206, 1238
AloI	GAACNNNNNNTCC	2 cut(s)	901, 933
AluBI	AGCT	5 cut(s)	34, 439, 460, 694, 981
AluI	AGCT	5 cut(s)	34, 439, 460, 694, 981
Alw21I	GWGCWC	1 cut(s)	829
Alw26I	GTCTC	3 cut(s)	32, 504, 671
AlwI	GGATC	2 cut(s)	83, 878
Ama87I	CYCGRG	1 cut(s)	1093
AoxI	GGCC	3 cut(s)	45, 186, 1122
ApeKI	GCWGC	2 cut(s)	22, 869
ApoI	RAATTY	3 cut(s)	129, 239, 706
ArsI	GACNNNNNNTTYG	2 cut(s)	754, 786
AseI	ATTAAT	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	509
AspLEI	GCGC	2 cut(s)	57, 1159
AspS9I	GGNCC	5 cut(s)	4, 99, 1123, 1164, 1248
AsuHPI	GGTGA	1 cut(s)	679
AsuII	TTCGAA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	1093
AvaII	GGWCC	4 cut(s)	4, 99, 1164, 1248
BaeI	ACNNNNGTAYC	2 cut(s)	468, 501
BalI	TGGCCA	2 cut(s)	47, 188
Bbv12I	GWGCWC	1 cut(s)	829
BbvI	GCAGC	2 cut(s)	34, 856
BccI	CCATC	3 cut(s)	37, 279, 1066
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	1 cut(s)	587
BcoDI	GTCTC	3 cut(s)	32, 504, 671
BfaI	CTAG	1 cut(s)	1187
BfmI	CTRYAG	2 cut(s)	440, 1209
BfrI	CTTAAG	1 cut(s)	890
BisI	GCNGC	3 cut(s)	23, 404, 870
BlsI	GCNGC	3 cut(s)	24, 405, 871
Bme1390I	CCNGG	1 cut(s)	587
Bme18I	GGWCC	4 cut(s)	4, 99, 1164, 1248
BmeT110I	CYCGRG	1 cut(s)	1093
BmgT120I	GGNCC	5 cut(s)	4, 99, 1123, 1164, 1248
BmiI	GGNNCC	2 cut(s)	793, 1165
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	2 cut(s)	677, 1025
BpmI	CTGGAG	2 cut(s)	56, 749
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	2 cut(s)	144, 829
BsaAI	YACGTR	1 cut(s)	1058
BsaBI	GATNNNNATC	1 cut(s)	426
BsaHI	GRCGYC	1 cut(s)	1203
BsaXI	ACNNNNNCTCC	6 cut(s)	11, 41, 901, 924, 931, 954
Bsc4I	CCNNNNNNNGG	3 cut(s)	906, 1019, 1050
Bse1I	ACTGG	3 cut(s)	552, 618, 732
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	587
BseGI	GGATG	3 cut(s)	427, 661, 1152
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	3 cut(s)	906, 1019, 1050
BseMII	CTCAG	5 cut(s)	149, 422, 471, 515, 942
BseNI	ACTGG	3 cut(s)	552, 618, 732
BseRI	GAGGAG	1 cut(s)	925
BseXI	GCAGC	2 cut(s)	34, 856
BsgI	GTGCAG	2 cut(s)	474, 855
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	3 cut(s)	47, 188, 1124
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	829
BsiHKCI	CYCGRG	1 cut(s)	1093
BsiSI	CCGG	1 cut(s)	1144
BslFI	GGGAC	2 cut(s)	278, 1066
BslI	CCNNNNNNNGG	3 cut(s)	906, 1019, 1050
BsmAI	GTCTC	3 cut(s)	32, 504, 671
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	278, 1066
BsnI	GGCC	3 cut(s)	47, 188, 1124
BsoBI	CYCGRG	1 cut(s)	1093
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	829
Bsp143I	GATC	5 cut(s)	70, 75, 124, 427, 883
BspACI	CCGC	3 cut(s)	146, 403, 788
BspANI	GGCC	3 cut(s)	47, 188, 1124
BspCNI	CTCAG	5 cut(s)	148, 423, 472, 514, 943
BspLI	GGNNCC	2 cut(s)	793, 1165
BspPI	GGATC	2 cut(s)	83, 878
BspQI	GCTCTTC	1 cut(s)	615
BspT104I	TTCGAA	1 cut(s)	320
BspTI	CTTAAG	1 cut(s)	890
BsrI	ACTGG	3 cut(s)	552, 618, 732
BssMI	GATC	5 cut(s)	70, 75, 124, 427, 883
BssNI	GRCGYC	1 cut(s)	1203
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	4 cut(s)	636, 782, 850, 961
Bst6I	CTCTTC	4 cut(s)	239, 615, 995, 1113
BstACI	GRCGYC	1 cut(s)	1203
BstAFI	CTTAAG	1 cut(s)	890
BstBAI	YACGTR	1 cut(s)	1058
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	4 cut(s)	66, 300, 462, 1155
BstDEI	CTNAG	5 cut(s)	135, 431, 480, 501, 951
BstF5I	GGATG	3 cut(s)	427, 661, 1152
BstHHI	GCGC	2 cut(s)	57, 1159
BstKTI	GATC	5 cut(s)	73, 78, 127, 430, 886
BstMAI	GTCTC	3 cut(s)	32, 504, 671
BstMBI	GATC	5 cut(s)	70, 75, 124, 427, 883
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 61, 614
BstNI	CCWGG	1 cut(s)	587
BstSCI	CCNGG	1 cut(s)	585
BstSFI	CTRYAG	2 cut(s)	440, 1209
BstV1I	GCAGC	2 cut(s)	34, 856
BsuRI	GGCC	3 cut(s)	47, 188, 1124
BtsCI	GGATG	3 cut(s)	427, 661, 1152
BtsIMutI	CAGTG	1 cut(s)	778
Cac8I	GCNNGC	4 cut(s)	66, 300, 462, 1155
CfoI	GCGC	2 cut(s)	57, 1159
Cfr13I	GGNCC	5 cut(s)	4, 99, 1123, 1164, 1248
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	989
CspCI	CAANNNNNGTGG	2 cut(s)	497, 532
CviAII	CATG	1 cut(s)	1115
CviQI	GTAC	1 cut(s)	989
DdeI	CTNAG	5 cut(s)	135, 431, 480, 501, 951
DpnI	GATC	5 cut(s)	72, 77, 126, 429, 885
DpnII	GATC	5 cut(s)	70, 75, 124, 427, 883
DraI	TTTAAA	1 cut(s)	985
EaeI	YGGCCR	2 cut(s)	45, 186
Eam1104I	CTCTTC	4 cut(s)	239, 615, 995, 1113
EarI	CTCTTC	4 cut(s)	239, 615, 995, 1113
EciI	GGCGGA	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	1180
Eco47I	GGWCC	4 cut(s)	4, 99, 1164, 1248
Eco57I	CTGAAG	3 cut(s)	88, 597, 716
Eco88I	CYCGRG	1 cut(s)	1093
EcoO109I	RGGNCCY	1 cut(s)	1164
EcoRII	CCWGG	1 cut(s)	585
EcoRV	GATATC	1 cut(s)	1180
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	1 cut(s)	1118
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 251, 283
FaqI	GGGAC	2 cut(s)	278, 1066
FatI	CATG	1 cut(s)	1114
FauI	CCCGC	1 cut(s)	781
Fnu4HI	GCNGC	3 cut(s)	23, 404, 870
FokI	GGATG	3 cut(s)	434, 668, 1159
Fsp4HI	GCNGC	3 cut(s)	23, 404, 870
FspBI	CTAG	1 cut(s)	1187
GlaI	GCGC	2 cut(s)	56, 1158
GluI	GCNGC	3 cut(s)	23, 404, 870
GsuI	CTGGAG	2 cut(s)	56, 749
HaeIII	GGCC	3 cut(s)	47, 188, 1124
HapII	CCGG	1 cut(s)	1144
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	2 cut(s)	57, 1159
Hin1I	GRCGYC	1 cut(s)	1203
Hin1II	CATG	1 cut(s)	1118
Hin6I	GCGC	2 cut(s)	55, 1157
HinP1I	GCGC	2 cut(s)	55, 1157
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	7 cut(s)	308, 317, 520, 731, 763, 860, 1003
HpaII	CCGG	1 cut(s)	1144
HphI	GGTGA	1 cut(s)	679
Hpy166II	GTNNAC	4 cut(s)	99, 344, 557, 583
Hpy188I	TCNGA	8 cut(s)	75, 80, 316, 432, 504, 577, 1133, 1201
Hpy188III	TCNNGA	7 cut(s)	7, 161, 830, 853, 1044, 1069, 1095
Hpy8I	GTNNAC	4 cut(s)	99, 344, 557, 583
Hpy99I	CGWCG	1 cut(s)	1208
HpyAV	CCTTC	6 cut(s)	112, 160, 208, 316, 691, 1082
HpyCH4III	ACNGT	4 cut(s)	636, 782, 850, 961
HpyCH4IV	ACGT	2 cut(s)	1057, 1203
HpyCH4V	TGCA	7 cut(s)	121, 298, 491, 668, 749, 872, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 61, 614
HpyF3I	CTNAG	5 cut(s)	135, 431, 480, 501, 951
HpySE526I	ACGT	2 cut(s)	1057, 1203
Hsp92I	GRCGYC	1 cut(s)	1203
Hsp92II	CATG	1 cut(s)	1118
HspAI	GCGC	2 cut(s)	55, 1157
Kzo9I	GATC	5 cut(s)	70, 75, 124, 427, 883
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	3 cut(s)	19, 625, 912
Lsp1109I	GCAGC	2 cut(s)	34, 856
LweI	GCATC	2 cut(s)	677, 1025
MaeI	CTAG	1 cut(s)	1187
MaeII	ACGT	2 cut(s)	1057, 1203
MaeIII	GTNAC	3 cut(s)	154, 844, 1066
MalI	GATC	5 cut(s)	72, 77, 126, 429, 885
MboI	GATC	5 cut(s)	70, 75, 124, 427, 883
MboII	GAAGA	9 cut(s)	226, 366, 407, 602, 713, 1012, 1020, 1032, 1130
MfeI	CAATTG	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	829
MlsI	TGGCCA	2 cut(s)	47, 188
MluCI	AATT	9 cut(s)	116, 129, 191, 239, 293, 509, 629, 706, 1221
MluNI	TGGCCA	2 cut(s)	47, 188
MlyI	GAGTC	4 cut(s)	740, 757, 869, 1012
MmeI	TCCRAC	1 cut(s)	120
Mox20I	TGGCCA	2 cut(s)	47, 188
MroXI	GAANNNNTTC	1 cut(s)	509
MscI	TGGCCA	2 cut(s)	47, 188
MseI	TTAA	5 cut(s)	390, 719, 737, 891, 984
MslI	CAYNNNNRTG	1 cut(s)	902
Msp20I	TGGCCA	2 cut(s)	47, 188
MspA1I	CMGCKG	1 cut(s)	788
MspCI	CTTAAG	1 cut(s)	890
MspI	CCGG	1 cut(s)	1144
MspR9I	CCNGG	1 cut(s)	587
MunI	CAATTG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	3 cut(s)	31, 61, 614
NdeII	GATC	5 cut(s)	70, 75, 124, 427, 883
NlaIII	CATG	1 cut(s)	1118
NlaIV	GGNNCC	2 cut(s)	793, 1165
NmuCI	GTSAC	2 cut(s)	844, 1066
NspV	TTCGAA	1 cut(s)	320
PaeR7I	CTCGAG	1 cut(s)	1093
PciSI	GCTCTTC	1 cut(s)	615
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	3 cut(s)	308, 317, 520
PkrI	GCNGC	3 cut(s)	24, 405, 871
Ple19I	CGATCG	1 cut(s)	73
PleI	GAGTC	4 cut(s)	739, 757, 868, 1011
PpsI	GAGTC	4 cut(s)	739, 757, 868, 1011
Ppu21I	YACGTR	1 cut(s)	1058
PpuMI	RGGWCCY	1 cut(s)	1164
PshBI	ATTAAT	1 cut(s)	390
PsiI	TTATAA	2 cut(s)	281, 944
Psp5II	RGGWCCY	1 cut(s)	1164
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspN4I	GGNNCC	2 cut(s)	793, 1165
PspPI	GGNCC	5 cut(s)	4, 99, 1123, 1164, 1248
PspPPI	RGGWCCY	1 cut(s)	1164
PvuI	CGATCG	1 cut(s)	73
RsaI	GTAC	1 cut(s)	990
RsaNI	GTAC	1 cut(s)	989
RseI	CAYNNNNRTG	1 cut(s)	902
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	5 cut(s)	390, 719, 737, 891, 984
SatI	GCNGC	3 cut(s)	23, 404, 870
Sau3AI	GATC	5 cut(s)	70, 75, 124, 427, 883
Sau96I	GGNCC	5 cut(s)	4, 99, 1123, 1164, 1248
SchI	GAGTC	4 cut(s)	740, 757, 869, 1012
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	829
SfaNI	GCATC	2 cut(s)	677, 1025
SfcI	CTRYAG	2 cut(s)	440, 1209
Sfr274I	CTCGAG	1 cut(s)	1093
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	4 cut(s)	4, 99, 1164, 1248
SlaI	CTCGAG	1 cut(s)	1093
SmiMI	CAYNNNNRTG	1 cut(s)	902
SmlI	CTYRAG	4 cut(s)	159, 808, 890, 1093
SmoI	CTYRAG	4 cut(s)	159, 808, 890, 1093
Sse9I	AATT	9 cut(s)	116, 129, 191, 239, 293, 509, 629, 706, 1221
SsiI	CCGC	3 cut(s)	146, 403, 788
SspMI	CTAG	1 cut(s)	1187
StyD4I	CCNGG	1 cut(s)	585
TaaI	ACNGT	4 cut(s)	636, 782, 850, 961
TaiI	ACGT	2 cut(s)	1060, 1206
TaqI	TCGA	3 cut(s)	320, 1031, 1094
TasI	AATT	9 cut(s)	116, 129, 191, 239, 293, 509, 629, 706, 1221
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	3 cut(s)	308, 317, 520
Tru1I	TTAA	5 cut(s)	390, 719, 737, 891, 984
Tru9I	TTAA	5 cut(s)	390, 719, 737, 891, 984
TscAI	CASTG	1 cut(s)	785
TseFI	GTSAC	2 cut(s)	844, 1066
TseI	GCWGC	2 cut(s)	22, 869
Tsp45I	GTSAC	2 cut(s)	844, 1066
TspDTI	ATGAA	5 cut(s)	408, 609, 1125, 1131, 1163
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	785
Vha464I	CTTAAG	1 cut(s)	890
VpaK11BI	GGWCC	4 cut(s)	4, 99, 1164, 1248
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	3 cut(s)	129, 239, 706
XhoI	CTCGAG	1 cut(s)	1093
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	1 cut(s)	1187
ZraI	GACGTC	1 cut(s)	1204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.