Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006897

Physical Location & Seq

Genomic Coordinates Reverse (-)

27806912 .. 27810154

Gene Structure 3243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCCACCGTAACACGCCCCAAATCCTCGTCGGAAAAGCAAAACTGGGAGCACATATTCAACGCCATGGTCAAGATTCTACAGGAGCAGCAGTCACAGCTGGAGACCATGGCCAAAGAGCGCAAAATGCTCGCGGATCGCATCCAAACCGAACACGACAAGTGGGCCTTCAACGTTAGATTGTTGCAGGATCAAATTGCCCAGTTGGAGGCGGATTTGGTTATGCAAGAGAAGAGTGGTGTGATTGAGGTGGCTAAGTTGGAGTTGCTTCTGGGCTTGAAGGAAAGAGAGGCTCTTTTCGTCAAATTTCAAAAAGAGGATACACAGAAGGACTTGGACGATTTTGTAACATGGGTCAAATTACACGCCGAAGGCTCTTGTGATCCAAAGGTTGGCGGGGAGAGCAGTAAACGAAAAGGGAGAAATGATAGCAATAAACAGTTGTCGAAAAGTGTTACAGAAGAAAAGCGGCTTTCTAGAGGTTTGGATGATGAACTAAAGAAGTTGCAGGGGGAATATGATAAGCTTGCTTCAAAAAAGAAAACTGAGGTTTCTGCGCTCTTGGCGGAGAAGAAATTTGTGTGGAATCAGTATAATCTTATGGAAAAAGACTATGCTGGGAAATTAAAGAGTAAGCAGTCTGAGGTTGACCAGGCTAATGAAAAGGTATATGCTCTTCTTGCCAGTATGGAGCAATTACAGTCGGCAAACAAAGAAAAGGATGATAAGATTGCATTGTTAGAGACTGATTTCACCAAGCTGAAGGAAGAGAATTCCAAAGTTGTAAGGGAACTGGAGTCGTTAAGAATGTCTGTTAGTGCTCCCGGCACTCCTGTTTTGAACCACTGCTCAGCAGGAACAAGAGCATTTAACTTGAGAGGCAAAAATAGTGCTCTGGATAGAAGTATTGTGACAGTCAAGAAAGAACCATCTGCTGCACAACTTACTGATCATCCTTCTAAGAACACCAAAATGGGGAGGAGGAGTTCAAAGAGAAATGGAGATGATGTTATAACAACCGAGGGAACTGTAAAGTTGTTCACGTCCAGCTTCAAAGTACCAAAAGTGAAGAGTCAATCAAGCAAATCTGCGGCATCATCTTCCAGAGGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

372

Amino Acids

41.73

Weight (kDa)

9.34

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19980
fragaria_vesca	FvH4_2g38440
malus_domestica	MD00G1092800.v1.1 MD08G1013200.v1.1 MD15G1012000.v1.1
prunus_persica	Prupe.1G365300_v2.0.a1
pyrus_communis	pycom08g01130 pycom15g01070
rosa_chinensis	RchiOBHm_Chr6g0302861
rosa_laevigata	RLG00000001570 RLG00000011130
rosa_multiflora	Rmu_ssc0000141.1_g000013 Rmu_ssc0000460.1_g000010
rosa_roxburghii	Rroxscaffold_2G00146980 Rroxscaffold_4G00295210 Rroxscaffold_7G00165210 Rroxscaffold_7G00165230
rosa_rugosa	Rorug06G0317800
rosa_samantha	Rh1BG155400 Rh6AG431100 Rh6BG471500 Rh6BG471600 Rh6CG443500 Rh6DG430200 Rh7CG342300
rosa_wichuraiana	Rw6G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1013
AccB7I	CCANNNNNTGG	1 cut(s)	392
AccII	CGCG	1 cut(s)	134
AciI	CCGC	6 cut(s)	134, 212, 396, 469, 566, 1091
AclI	AACGTT	1 cut(s)	174
AclWI	GGATC	3 cut(s)	144, 198, 377
AcoI	YGGCCR	2 cut(s)	3, 111
AcsI	RAATTY	3 cut(s)	305, 575, 772
AcuI	CTGAAG	1 cut(s)	782
AfaI	GTAC	1 cut(s)	1059
AfiI	CCNNNNNNNGG	4 cut(s)	208, 392, 975, 1110
AgsI	TTSAA	8 cut(s)	61, 172, 280, 311, 534, 841, 990, 1054
AjiI	CACGTC	1 cut(s)	1044
AjnI	CCWGG	1 cut(s)	651
AloI	GAACNNNNNNTCC	2 cut(s)	970, 1002
AluBI	AGCT	4 cut(s)	100, 526, 760, 1050
AluI	AGCT	4 cut(s)	100, 526, 760, 1050
Alw21I	GWGCWC	3 cut(s)	54, 823, 895
Alw26I	GTCTC	2 cut(s)	98, 737
AlwI	GGATC	3 cut(s)	144, 198, 377
AoxI	GGCC	3 cut(s)	3, 111, 165
ApeKI	GCWGC	2 cut(s)	88, 935
ApoI	RAATTY	3 cut(s)	305, 575, 772
AspLEI	GCGC	2 cut(s)	123, 559
AspS9I	GGNCC	1 cut(s)	165
AsuC2I	CCSGG	1 cut(s)	825
AsuHPI	GGTGA	1 cut(s)	745
BalI	TGGCCA	2 cut(s)	5, 113
BarI	GAAGNNNNNNTAC	2 cut(s)	660, 692
Bbv12I	GWGCWC	3 cut(s)	54, 823, 895
BbvI	GCAGC	2 cut(s)	100, 922
BccI	CCATC	1 cut(s)	937
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	1 cut(s)	653
BciVI	GTATCC	1 cut(s)	313
BclI	TGATCA	1 cut(s)	949
BcnI	CCSGG	1 cut(s)	825
BcoDI	GTCTC	2 cut(s)	98, 737
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	80
BfuI	GTATCC	1 cut(s)	313
BisI	GCNGC	4 cut(s)	89, 470, 936, 1092
BlpI	GCTNAGC	1 cut(s)	850
BlsI	GCNGC	4 cut(s)	90, 471, 937, 1093
Bme1390I	CCNGG	2 cut(s)	653, 825
BmgBI	CACGTC	1 cut(s)	1044
BmgT120I	GGNCC	1 cut(s)	165
BmrFI	CCNGG	2 cut(s)	653, 825
BmrI	ACTGGG	2 cut(s)	55, 196
BmsI	GCATC	2 cut(s)	150, 1103
BmuI	ACTGGG	2 cut(s)	55, 196
BpmI	CTGGAG	2 cut(s)	122, 815
Bpu1102I	GCTNAGC	1 cut(s)	850
BpuEI	CTTGAG	1 cut(s)	895
BpuMI	CCSGG	1 cut(s)	825
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	3 cut(s)	66, 108, 1020
BsaXI	ACNNNNNCTCC	6 cut(s)	77, 107, 970, 993, 1000, 1023
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 392, 975, 1110
Bse1I	ACTGG	4 cut(s)	50, 202, 684, 798
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	3 cut(s)	66, 108, 1020
BseGI	GGATG	4 cut(s)	141, 493, 727, 952
BseLI	CCNNNNNNNGG	4 cut(s)	208, 392, 975, 1110
BseMII	CTCAG	3 cut(s)	537, 633, 864
BseNI	ACTGG	4 cut(s)	50, 202, 684, 798
BseRI	GAGGAG	2 cut(s)	994, 997
BseXI	GCAGC	2 cut(s)	100, 922
BseYI	CCCAGC	1 cut(s)	617
BsgI	GTGCAG	1 cut(s)	921
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	3 cut(s)	5, 113, 167
BsiHKAI	GWGCWC	3 cut(s)	54, 823, 895
BsiSI	CCGG	1 cut(s)	825
BslI	CCNNNNNNNGG	4 cut(s)	208, 392, 975, 1110
BsmAI	GTCTC	2 cut(s)	98, 737
BsnI	GGCC	3 cut(s)	5, 113, 167
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	54, 823, 895
Bsp143I	GATC	4 cut(s)	136, 190, 382, 949
Bsp1720I	GCTNAGC	1 cut(s)	850
Bsp19I	CCATGG	2 cut(s)	66, 108
BspACI	CCGC	6 cut(s)	134, 212, 396, 469, 566, 1091
BspANI	GGCC	3 cut(s)	5, 113, 167
BspCNI	CTCAG	3 cut(s)	538, 634, 863
BspFNI	CGCG	1 cut(s)	134
BspPI	GGATC	3 cut(s)	144, 198, 377
BspQI	GCTCTTC	1 cut(s)	681
BspTNI	GGTCTC	1 cut(s)	98
BsrI	ACTGG	4 cut(s)	50, 202, 684, 798
BssECI	CCNNGG	3 cut(s)	66, 108, 1020
BssMI	GATC	4 cut(s)	136, 190, 382, 949
BssT1I	CCWWGG	2 cut(s)	66, 108
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	5 cut(s)	10, 441, 702, 916, 1030
Bst6I	CTCTTC	4 cut(s)	227, 681, 762, 1064
BstC8I	GCNNGC	2 cut(s)	132, 528
BstDEI	CTNAG	5 cut(s)	255, 546, 642, 850, 960
BstDSI	CCRYGG	2 cut(s)	66, 108
BstF5I	GGATG	4 cut(s)	141, 493, 727, 952
BstFNI	CGCG	1 cut(s)	134
BstHHI	GCGC	2 cut(s)	123, 559
BstKTI	GATC	4 cut(s)	139, 193, 385, 952
BstMAI	GTCTC	2 cut(s)	98, 737
BstMBI	GATC	4 cut(s)	136, 190, 382, 949
BstMWI	GCNNNNNNNGC	5 cut(s)	97, 127, 402, 563, 680
BstNI	CCWGG	1 cut(s)	653
BstSCI	CCNGG	2 cut(s)	651, 823
BstSFI	CTRYAG	1 cut(s)	80
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	100, 922
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	5, 113, 167
BtgI	CCRYGG	2 cut(s)	66, 108
BtrI	CACGTC	1 cut(s)	1044
BtsCI	GGATG	4 cut(s)	141, 493, 727, 952
BtsI	GCAGTG	1 cut(s)	844
BtsIMutI	CAGTG	1 cut(s)	844
Cac8I	GCNNGC	2 cut(s)	132, 528
CfoI	GCGC	2 cut(s)	123, 559
Cfr13I	GGNCC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	1058
CviAII	CATG	3 cut(s)	67, 109, 351
CviQI	GTAC	1 cut(s)	1058
DdeI	CTNAG	5 cut(s)	255, 546, 642, 850, 960
DpnI	GATC	4 cut(s)	138, 192, 384, 951
DpnII	GATC	4 cut(s)	136, 190, 382, 949
EaeI	YGGCCR	2 cut(s)	3, 111
Eam1104I	CTCTTC	4 cut(s)	227, 681, 762, 1064
EarI	CTCTTC	4 cut(s)	227, 681, 762, 1064
EciI	GGCGGA	2 cut(s)	227, 581
Eco130I	CCWWGG	2 cut(s)	66, 108
Eco31I	GGTCTC	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	782
EcoRI	GAATTC	1 cut(s)	772
EcoRII	CCWGG	1 cut(s)	651
EcoT14I	CCWWGG	2 cut(s)	66, 108
ErhI	CCWWGG	2 cut(s)	66, 108
FaeI	CATG	3 cut(s)	70, 112, 354
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	3 cut(s)	66, 108, 350
FauI	CCCGC	1 cut(s)	389
FbaI	TGATCA	1 cut(s)	949
Fnu4HI	GCNGC	4 cut(s)	89, 470, 936, 1092
FokI	GGATG	4 cut(s)	128, 500, 734, 939
Fsp4HI	GCNGC	4 cut(s)	89, 470, 936, 1092
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	2 cut(s)	122, 558
GluI	GCNGC	4 cut(s)	89, 470, 936, 1092
GsaI	CCCAGC	1 cut(s)	621
GsuI	CTGGAG	2 cut(s)	122, 815
HaeIII	GGCC	3 cut(s)	5, 113, 167
HapII	CCGG	1 cut(s)	825
HhaI	GCGC	2 cut(s)	123, 559
Hin1II	CATG	3 cut(s)	70, 112, 354
Hin6I	GCGC	2 cut(s)	121, 557
HinP1I	GCGC	2 cut(s)	121, 557
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	4 cut(s)	76, 586, 797, 1072
HpaII	CCGG	1 cut(s)	825
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	3 cut(s)	410, 649, 1041
Hpy188I	TCNGA	2 cut(s)	34, 643
Hpy188III	TCNNGA	5 cut(s)	73, 477, 896, 919, 1104
Hpy8I	GTNNAC	3 cut(s)	410, 649, 1041
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	6 cut(s)	178, 274, 322, 365, 757, 966
HpyCH4III	ACNGT	5 cut(s)	10, 441, 702, 916, 1030
HpyCH4IV	ACGT	2 cut(s)	174, 1043
HpyCH4V	TGCA	5 cut(s)	187, 226, 508, 734, 938
HpyF10VI	GCNNNNNNNGC	5 cut(s)	97, 127, 402, 563, 680
HpyF3I	CTNAG	5 cut(s)	255, 546, 642, 850, 960
HpySE526I	ACGT	2 cut(s)	174, 1043
Hsp92II	CATG	3 cut(s)	70, 112, 354
HspAI	GCGC	2 cut(s)	121, 557
Ksp22I	TGATCA	1 cut(s)	949
Kzo9I	GATC	4 cut(s)	136, 190, 382, 949
LguI	GCTCTTC	1 cut(s)	681
LmnI	GCTCC	4 cut(s)	49, 85, 691, 826
Lsp1109I	GCAGC	2 cut(s)	100, 922
LweI	GCATC	2 cut(s)	150, 1103
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	2 cut(s)	174, 1043
MaeIII	GTNAC	5 cut(s)	10, 93, 346, 454, 910
MalI	GATC	4 cut(s)	138, 192, 384, 951
MboI	GATC	4 cut(s)	136, 190, 382, 949
MboII	GAAGA	7 cut(s)	244, 473, 583, 668, 779, 1081, 1092
MhlI	GDGCHC	3 cut(s)	54, 823, 895
MlsI	TGGCCA	2 cut(s)	5, 113
MluCI	AATT	7 cut(s)	195, 305, 359, 575, 623, 695, 772
MluNI	TGGCCA	2 cut(s)	5, 113
MlyI	GAGTC	2 cut(s)	806, 1081
MmeI	TCCRAC	3 cut(s)	12, 186, 240
Mox20I	TGGCCA	2 cut(s)	5, 113
MscI	TGGCCA	2 cut(s)	5, 113
MseI	TTAA	3 cut(s)	626, 803, 870
MslI	CAYNNNNRTG	1 cut(s)	971
Msp20I	TGGCCA	2 cut(s)	5, 113
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	1 cut(s)	825
MspR9I	CCNGG	2 cut(s)	653, 825
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	5 cut(s)	97, 127, 402, 563, 680
NciI	CCSGG	1 cut(s)	825
NcoI	CCATGG	2 cut(s)	66, 108
NdeII	GATC	4 cut(s)	136, 190, 382, 949
NlaIII	CATG	3 cut(s)	70, 112, 354
NmuCI	GTSAC	2 cut(s)	93, 910
PciSI	GCTCTTC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	76, 586
PflMI	CCANNNNNTGG	1 cut(s)	392
PkrI	GCNGC	4 cut(s)	90, 471, 937, 1093
PleI	GAGTC	2 cut(s)	805, 1080
PpsI	GAGTC	2 cut(s)	805, 1080
PsiI	TTATAA	1 cut(s)	1013
Psp1406I	AACGTT	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	651
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	1 cut(s)	651
PspPI	GGNCC	1 cut(s)	165
PvuII	CAGCTG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	1059
RsaNI	GTAC	1 cut(s)	1058
RseI	CAYNNNNRTG	1 cut(s)	971
SapI	GCTCTTC	1 cut(s)	681
SaqAI	TTAA	3 cut(s)	626, 803, 870
SatI	GCNGC	4 cut(s)	89, 470, 936, 1092
Sau3AI	GATC	4 cut(s)	136, 190, 382, 949
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	2 cut(s)	806, 1081
ScrFI	CCNGG	2 cut(s)	653, 825
SduI	GDGCHC	3 cut(s)	54, 823, 895
SfaNI	GCATC	2 cut(s)	150, 1103
SfcI	CTRYAG	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	971
SmlI	CTYRAG	1 cut(s)	874
SmoI	CTYRAG	1 cut(s)	874
Sse9I	AATT	7 cut(s)	195, 305, 359, 575, 623, 695, 772
SsiI	CCGC	6 cut(s)	134, 212, 396, 469, 566, 1091
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	2 cut(s)	651, 823
StyI	CCWWGG	2 cut(s)	66, 108
TaaI	ACNGT	5 cut(s)	10, 441, 702, 916, 1030
TaiI	ACGT	2 cut(s)	177, 1046
TaqI	TCGA	1 cut(s)	446
TasI	AATT	7 cut(s)	195, 305, 359, 575, 623, 695, 772
TauI	GCSGC	2 cut(s)	472, 1094
TfiI	GAWTC	2 cut(s)	76, 586
Tru1I	TTAA	3 cut(s)	626, 803, 870
Tru9I	TTAA	3 cut(s)	626, 803, 870
TscAI	CASTG	1 cut(s)	851
TseFI	GTSAC	2 cut(s)	93, 910
TseI	GCWGC	2 cut(s)	88, 935
Tsp45I	GTSAC	2 cut(s)	93, 910
TspDTI	ATGAA	2 cut(s)	507, 675
TspRI	CASTG	1 cut(s)	851
Van91I	CCANNNNNTGG	1 cut(s)	392
XapI	RAATTY	3 cut(s)	305, 575, 772
XbaI	TCTAGA	1 cut(s)	476
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.