Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006897

Physical Location & Seq

Genomic Coordinates Reverse (-)

84877046 .. 84881025

Gene Structure 3980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00146980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGAGGCTGCATTGAACGCTGCATTGAACGATTGCGCTCTAAATCGTCGTCGGAAAGTCAAAATTGGGAGCACATATTCAATGCCACGATCCAGATTTTACAGGAGCAGCAGTACAAGCTAGAGACGATGGCCAAAGAGCGCAAAATGCTAGCCGATCGGATCAGAACGGAACACAACAAGTGGGCCTTCAACGTCAGCCAATTGCAAGATCAAATTTCCCAGTTGGAGGCGGATTTGGTTACGCAAGAGAAGGGTGGTGTGGTTGAGGTGGCCAAATTGGAGTTGCTTCTGGGCTTGAAGGAAAGAGAGGCTGTTCTCTTCAAATTTCAAAAAGATATCGGTTATGGTGGTGAAGATAGTGGTCATCAGCCGTATTTTATCTGGGATTTCAGCTGTGAGGAGGTTCCTACCAAAAGCTCGCCCAAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.58

Weight (kDa)

5.47

Isoelectric Point (pI)

57.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19980
fragaria_vesca	FvH4_2g38440
malus_domestica	MD00G1092800.v1.1 MD08G1013200.v1.1 MD15G1012000.v1.1
prunus_persica	Prupe.1G365300_v2.0.a1
pyrus_communis	pycom08g01130 pycom15g01070
rosa_chinensis	RchiOBHm_Chr6g0302861
rosa_laevigata	RLG00000001570 RLG00000011130
rosa_multiflora	Rmu_ssc0000141.1_g000013 Rmu_ssc0000460.1_g000010
rosa_roxburghii	Rroxscaffold_2G00146980 Rroxscaffold_4G00295210 Rroxscaffold_7G00165210 Rroxscaffold_7G00165230
rosa_rugosa	Rorug06G0317800
rosa_samantha	Rh1BG155400 Rh6AG431100 Rh6BG471500 Rh6BG471600 Rh6CG443500 Rh6DG430200 Rh7CG342300
rosa_wichuraiana	Rw6G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	2 cut(s)	85, 170
AcoI	YGGCCR	2 cut(s)	132, 273
AcsI	RAATTY	2 cut(s)	216, 326
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	7 cut(s)	17, 29, 82, 193, 301, 325, 332
AluBI	AGCT	3 cut(s)	121, 396, 420
AluI	AGCT	3 cut(s)	121, 396, 420
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	85, 170
AoxI	GGCC	3 cut(s)	132, 186, 273
ApeKI	GCWGC	3 cut(s)	9, 21, 109
ApoI	RAATTY	2 cut(s)	216, 326
AspLEI	GCGC	2 cut(s)	39, 144
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	365
AsuNHI	GCTAGC	1 cut(s)	151
BalI	TGGCCA	2 cut(s)	134, 275
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	8, 121
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	122, 152
BisI	GCNGC	3 cut(s)	10, 22, 110
BlsI	GCNGC	3 cut(s)	11, 23, 111
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	408
BmrI	ACTGGG	1 cut(s)	217
BmtI	GCTAGC	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	8, 121
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	3 cut(s)	134, 188, 275
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
BsnI	GGCC	3 cut(s)	134, 188, 275
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	4 cut(s)	90, 157, 162, 211
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	3 cut(s)	134, 188, 275
BspLI	GGNNCC	1 cut(s)	408
BspOI	GCTAGC	1 cut(s)	155
BspPI	GGATC	2 cut(s)	85, 170
BsrI	ACTGG	1 cut(s)	223
BssMI	GATC	4 cut(s)	90, 157, 162, 211
Bst6I	CTCTTC	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	153, 422
BstHHI	GCGC	2 cut(s)	39, 144
BstKTI	GATC	4 cut(s)	93, 160, 165, 214
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	4 cut(s)	90, 157, 162, 211
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 118, 148
BstV1I	GCAGC	2 cut(s)	8, 121
BsuRI	GGCC	3 cut(s)	134, 188, 275
Cac8I	GCNNGC	2 cut(s)	153, 422
CfoI	GCGC	2 cut(s)	39, 144
Cfr13I	GGNCC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	115
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	4 cut(s)	92, 159, 164, 213
DpnII	GATC	4 cut(s)	90, 157, 162, 211
EaeI	YGGCCR	2 cut(s)	132, 273
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
EciI	GGCGGA	1 cut(s)	248
Eco32I	GATATC	1 cut(s)	340
EcoRV	GATATC	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	119
FaiI	YATR	2 cut(s)	77, 348
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
Fnu4HI	GCNGC	3 cut(s)	10, 22, 110
Fsp4HI	GCNGC	3 cut(s)	10, 22, 110
FspBI	CTAG	2 cut(s)	122, 152
GlaI	GCGC	2 cut(s)	38, 143
GluI	GCNGC	3 cut(s)	10, 22, 110
HaeIII	GGCC	3 cut(s)	134, 188, 275
HhaI	GCGC	2 cut(s)	39, 144
Hin6I	GCGC	2 cut(s)	37, 142
HinP1I	GCGC	2 cut(s)	37, 142
HphI	GGTGA	1 cut(s)	365
Hpy188I	TCNGA	3 cut(s)	55, 162, 167
Hpy188III	TCNNGA	1 cut(s)	94
Hpy99I	CGWCG	2 cut(s)	52, 55
HpyAV	CCTTC	3 cut(s)	199, 247, 295
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	12, 24, 208
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 118, 148
HpySE526I	ACGT	1 cut(s)	195
HspAI	GCGC	2 cut(s)	37, 142
Kzo9I	GATC	4 cut(s)	90, 157, 162, 211
LmnI	GCTCC	2 cut(s)	70, 106
LpnPI	CCDG	5 cut(s)	89, 107, 236, 278, 370
Lsp1109I	GCAGC	2 cut(s)	8, 121
MaeI	CTAG	2 cut(s)	122, 152
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	4 cut(s)	92, 159, 164, 213
MboI	GATC	4 cut(s)	90, 157, 162, 211
MboII	GAAGA	2 cut(s)	313, 368
MfeI	CAATTG	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	2 cut(s)	134, 275
MluCI	AATT	5 cut(s)	64, 203, 216, 278, 326
MluNI	TGGCCA	2 cut(s)	134, 275
MmeI	TCCRAC	2 cut(s)	33, 207
MnlI	CCTC	5 cut(s)	223, 262, 304, 394, 397
Mox20I	TGGCCA	2 cut(s)	134, 275
MscI	TGGCCA	2 cut(s)	134, 275
Msp20I	TGGCCA	2 cut(s)	134, 275
MspA1I	CMGCKG	1 cut(s)	396
MunI	CAATTG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	18, 118, 148
NdeII	GATC	4 cut(s)	90, 157, 162, 211
NheI	GCTAGC	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	408
PkrI	GCNGC	3 cut(s)	11, 23, 111
Ple19I	CGATCG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	186
PvuI	CGATCG	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	396
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SatI	GCNGC	3 cut(s)	10, 22, 110
Sau3AI	GATC	4 cut(s)	90, 157, 162, 211
Sau96I	GGNCC	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	6 cut(s)	123, 198, 273, 398, 408, 422
Sse9I	AATT	5 cut(s)	64, 203, 216, 278, 326
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	2 cut(s)	122, 152
TaiI	ACGT	1 cut(s)	198
TasI	AATT	5 cut(s)	64, 203, 216, 278, 326
TatI	WGTACW	1 cut(s)	114
TseI	GCWGC	3 cut(s)	9, 21, 109
TspGWI	ACGGA	1 cut(s)	185
XapI	RAATTY	2 cut(s)	216, 326
XspI	CTAG	2 cut(s)	122, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.