Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006897

Physical Location & Seq

Genomic Coordinates Forward (+)

62206539 .. 62208836

Gene Structure 2298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG443500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGTACGGTAACGCACTCTAAATCGTCGTCGGAAAGTCAAAATTGGGAGCACATATTCAACGCCATGGTCCAGATTTTACAGGAGCAGCAGTCCAAGCTGGAGACGATGGCCAAAGAGCGCAAAATGCTCGCCGAGCGGATCAGAACGGAACACGACAAGTGGACCTTCAGCGTCAGCCAATTGCAAGATCAAATTTCCCAGTTGGAGGCGGATTTGGTTACGCAAGAGAAGGGTGGTGTGGTTGAGGTGGCCAAATTGGAGTTGCTTCTGGGCTTGAAGGAAAGAGAGGCTGTTCTCTTCAAATTTCAAAAAGAGGATATAAAGAGGGACTTGGACGATTTTATAAGATGGGTTGAATTGCACGCCAAAGAATCCTCTGATTCGAAGGTAGGTGGGGAGAGCAGTAAACGAAAAGGAAGAAATAATAGCAATACAAAGTTGTCCAAAACTATTAACGAAGAAAAGCGGCTTGCTAAAGGTGTGGATGATGATCTGAGAAAGTTACAGCAGGAATATGATAAGCTTGCTTTGGAAAAGAAAACTGAGGTATCTGCACTCTTGTCTCAGAAGCAATTCGTGTGGAATCAGTATAATCTTTTGGAAAAAGACTACACCAGTAAACTAAAGAGTAAGCAGTCTGAAGTTGACCAGGCTGATGAAAAGATACGGGCTCTTCTTGCCAGTATGGAGCAATTACAGTCCTCAAACAAAGAAAAGGATGATAAGATTGCATCATTAGAGACTGATTTCACCAAGCTGAAGGAAGAAAATTCCAAAGTTTTAAGGGAACTGGAGTCGTTAAGAAAGTCTGCAAGTGCTTCCACGACTCCTGTTTTGAACCACTGTTCAGCGGGAACCAGAGCATATAACTTGAGAGGCAAAAATAGTGCTCTTGATAGAAGTATTGTGACAGTCAAGAAAGAGTCATCTGCTGCACAACTTACTGATCCTCTTAAGAACACCAAAATGGGGAGGAGCAGTTCAAAGAGAAATGGAGATGATGTTATAACAACTGAGGGAACTGTAAAGTTGTTCTCGTCCAGCTTTAAAGTACCAAAAGTGAAGAGTCATTGTCCTGCATCTGGCAAATCTTCGACATCATCTTCCAGAGGGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

373

Amino Acids

41.98

Weight (kDa)

9.25

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19980
fragaria_vesca	FvH4_2g38440
malus_domestica	MD00G1092800.v1.1 MD08G1013200.v1.1 MD15G1012000.v1.1
prunus_persica	Prupe.1G365300_v2.0.a1
pyrus_communis	pycom08g01130 pycom15g01070
rosa_chinensis	RchiOBHm_Chr6g0302861
rosa_laevigata	RLG00000001570 RLG00000011130
rosa_multiflora	Rmu_ssc0000141.1_g000013 Rmu_ssc0000460.1_g000010
rosa_roxburghii	Rroxscaffold_2G00146980 Rroxscaffold_4G00295210 Rroxscaffold_7G00165210 Rroxscaffold_7G00165230
rosa_rugosa	Rorug06G0317800
rosa_samantha	Rh1BG155400 Rh6AG431100 Rh6BG471500 Rh6BG471600 Rh6CG443500 Rh6DG430200 Rh7CG342300
rosa_wichuraiana	Rw6G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	347, 1010
AccBSI	CCGCTC	1 cut(s)	139
AciI	CCGC	4 cut(s)	139, 212, 469, 854
AclWI	GGATC	2 cut(s)	149, 944
AcoI	YGGCCR	2 cut(s)	111, 252
AcsI	RAATTY	3 cut(s)	195, 305, 772
AcuI	CTGAAG	3 cut(s)	154, 663, 782
AfaI	GTAC	2 cut(s)	7, 1056
AfiI	CCNNNNNNNGG	4 cut(s)	208, 972, 1085, 1116
AflII	CTTAAG	1 cut(s)	956
AgsI	TTSAA	7 cut(s)	61, 280, 304, 311, 359, 841, 987
AjnI	CCWGG	1 cut(s)	651
AloI	GAACNNNNNNTCC	2 cut(s)	967, 999
AluBI	AGCT	4 cut(s)	100, 526, 760, 1047
AluI	AGCT	4 cut(s)	100, 526, 760, 1047
Alw21I	GWGCWC	2 cut(s)	54, 895
Alw26I	GTCTC	3 cut(s)	98, 570, 737
AlwI	GGATC	2 cut(s)	149, 944
AoxI	GGCC	2 cut(s)	111, 252
ApeKI	GCWGC	2 cut(s)	88, 935
ApoI	RAATTY	3 cut(s)	195, 305, 772
ArsI	GACNNNNNNTTYG	2 cut(s)	820, 852
Asp700I	GAANNNNTTC	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	70, 165
AsuHPI	GGTGA	1 cut(s)	745
AsuII	TTCGAA	1 cut(s)	386
AvaII	GGWCC	2 cut(s)	70, 165
BaeI	ACNNNNGTAYC	2 cut(s)	534, 567
BalI	TGGCCA	2 cut(s)	113, 254
BanII	GRGCYC	1 cut(s)	676
Bbv12I	GWGCWC	2 cut(s)	54, 895
BbvI	GCAGC	2 cut(s)	100, 922
BccI	CCATC	2 cut(s)	103, 345
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	1 cut(s)	653
BcoDI	GTCTC	3 cut(s)	98, 570, 737
BfrI	CTTAAG	1 cut(s)	956
BisI	GCNGC	3 cut(s)	89, 470, 936
BlsI	GCNGC	3 cut(s)	90, 471, 937
Bme1390I	CCNGG	1 cut(s)	653
Bme18I	GGWCC	2 cut(s)	70, 165
BmgT120I	GGNCC	2 cut(s)	70, 165
BmiI	GGNNCC	1 cut(s)	859
BmrFI	CCNGG	1 cut(s)	653
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	2 cut(s)	743, 1091
BmuI	ACTGGG	1 cut(s)	196
BpmI	CTGGAG	2 cut(s)	122, 815
Bpu14I	TTCGAA	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	895
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	6 cut(s)	77, 107, 967, 990, 997, 1020
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 972, 1085, 1116
Bse1I	ACTGG	4 cut(s)	202, 618, 684, 798
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	2 cut(s)	493, 727
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	4 cut(s)	208, 972, 1085, 1116
BseMII	CTCAG	4 cut(s)	488, 537, 581, 1008
BseNI	ACTGG	4 cut(s)	202, 618, 684, 798
BseRI	GAGGAG	1 cut(s)	991
BseXI	GCAGC	2 cut(s)	100, 922
BsgI	GTGCAG	2 cut(s)	540, 921
BshFI	GGCC	2 cut(s)	113, 254
BsiHKAI	GWGCWC	2 cut(s)	54, 895
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	4 cut(s)	208, 972, 1085, 1116
BsmAI	GTCTC	3 cut(s)	98, 570, 737
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	113, 254
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	3 cut(s)	54, 676, 895
Bsp143I	GATC	4 cut(s)	141, 190, 493, 949
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	4 cut(s)	139, 212, 469, 854
BspANI	GGCC	2 cut(s)	113, 254
BspCNI	CTCAG	4 cut(s)	489, 538, 580, 1009
BspLI	GGNNCC	1 cut(s)	859
BspPI	GGATC	2 cut(s)	149, 944
BspQI	GCTCTTC	1 cut(s)	681
BspT104I	TTCGAA	1 cut(s)	386
BspTI	CTTAAG	1 cut(s)	956
BsrBI	CCGCTC	1 cut(s)	139
BsrI	ACTGG	4 cut(s)	202, 618, 684, 798
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	4 cut(s)	141, 190, 493, 949
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	5 cut(s)	10, 702, 848, 916, 1027
Bst6I	CTCTTC	3 cut(s)	305, 681, 1061
BstAFI	CTTAAG	1 cut(s)	956
BstBI	TTCGAA	1 cut(s)	386
BstC8I	GCNNGC	4 cut(s)	132, 366, 474, 528
BstDEI	CTNAG	4 cut(s)	497, 546, 567, 1017
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	493, 727
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	4 cut(s)	144, 193, 496, 952
BstMAI	GTCTC	3 cut(s)	98, 570, 737
BstMBI	GATC	4 cut(s)	141, 190, 493, 949
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 127, 136, 680
BstNI	CCWGG	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	651
BstV1I	GCAGC	2 cut(s)	100, 922
BsuRI	GGCC	2 cut(s)	113, 254
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	493, 727
BtsIMutI	CAGTG	1 cut(s)	844
Cac8I	GCNNGC	4 cut(s)	132, 366, 474, 528
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	70, 165
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	6, 1055
CspCI	CAANNNNNGTGG	2 cut(s)	563, 598
CviAII	CATG	1 cut(s)	67
CviQI	GTAC	2 cut(s)	6, 1055
DdeI	CTNAG	4 cut(s)	497, 546, 567, 1017
DpnI	GATC	4 cut(s)	143, 192, 495, 951
DpnII	GATC	4 cut(s)	141, 190, 493, 949
DraI	TTTAAA	1 cut(s)	1051
EaeI	YGGCCR	2 cut(s)	111, 252
Eam1104I	CTCTTC	3 cut(s)	305, 681, 1061
EarI	CTCTTC	3 cut(s)	305, 681, 1061
EciI	GGCGGA	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	676
Eco47I	GGWCC	2 cut(s)	70, 165
Eco57I	CTGAAG	3 cut(s)	154, 663, 782
EcoRII	CCWGG	1 cut(s)	651
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	70
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 317, 349
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	1 cut(s)	66
FauI	CCCGC	1 cut(s)	847
Fnu4HI	GCNGC	3 cut(s)	89, 470, 936
FokI	GGATG	2 cut(s)	500, 734
FriOI	GRGCYC	1 cut(s)	676
Fsp4HI	GCNGC	3 cut(s)	89, 470, 936
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	3 cut(s)	89, 470, 936
GsuI	CTGGAG	2 cut(s)	122, 815
HaeIII	GGCC	2 cut(s)	113, 254
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	7 cut(s)	374, 383, 586, 797, 829, 926, 1069
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	4 cut(s)	165, 410, 623, 649
Hpy188I	TCNGA	6 cut(s)	34, 146, 382, 498, 570, 643
Hpy188III	TCNNGA	4 cut(s)	73, 896, 919, 1110
Hpy8I	GTNNAC	4 cut(s)	165, 410, 623, 649
Hpy99I	CGWCG	2 cut(s)	31, 34
HpyAV	CCTTC	5 cut(s)	178, 226, 274, 382, 757
HpyCH4III	ACNGT	5 cut(s)	10, 702, 848, 916, 1027
HpyCH4V	TGCA	7 cut(s)	187, 364, 557, 734, 815, 938, 1082
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 127, 136, 680
HpyF3I	CTNAG	4 cut(s)	497, 546, 567, 1017
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	141, 190, 493, 949
LguI	GCTCTTC	1 cut(s)	681
LmnI	GCTCC	4 cut(s)	49, 85, 691, 978
Lsp1109I	GCAGC	2 cut(s)	100, 922
LweI	GCATC	2 cut(s)	743, 1091
MaeIII	GTNAC	4 cut(s)	10, 220, 504, 910
MalI	GATC	4 cut(s)	143, 192, 495, 951
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	4 cut(s)	141, 190, 493, 949
MboII	GAAGA	8 cut(s)	292, 432, 473, 668, 779, 1078, 1086, 1098
MfeI	CAATTG	1 cut(s)	182
MhlI	GDGCHC	3 cut(s)	54, 676, 895
MlsI	TGGCCA	2 cut(s)	113, 254
MluCI	AATT	9 cut(s)	43, 182, 195, 257, 305, 359, 575, 695, 772
MluNI	TGGCCA	2 cut(s)	113, 254
MlyI	GAGTC	4 cut(s)	806, 823, 935, 1078
MmeI	TCCRAC	2 cut(s)	12, 186
Mox20I	TGGCCA	2 cut(s)	113, 254
MroXI	GAANNNNTTC	1 cut(s)	575
MscI	TGGCCA	2 cut(s)	113, 254
MseI	TTAA	5 cut(s)	456, 785, 803, 957, 1050
MslI	CAYNNNNRTG	1 cut(s)	968
Msp20I	TGGCCA	2 cut(s)	113, 254
MspA1I	CMGCKG	1 cut(s)	854
MspCI	CTTAAG	1 cut(s)	956
MspR9I	CCNGG	1 cut(s)	653
MunI	CAATTG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	653
MwoI	GCNNNNNNNGC	4 cut(s)	97, 127, 136, 680
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	4 cut(s)	141, 190, 493, 949
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	1 cut(s)	859
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	910
NspV	TTCGAA	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	681
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	3 cut(s)	374, 383, 586
PkrI	GCNGC	3 cut(s)	90, 471, 937
PleI	GAGTC	4 cut(s)	805, 823, 934, 1077
PpsI	GAGTC	4 cut(s)	805, 823, 934, 1077
PsiI	TTATAA	2 cut(s)	347, 1010
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	1 cut(s)	859
PspPI	GGNCC	2 cut(s)	70, 165
RsaI	GTAC	2 cut(s)	7, 1056
RsaNI	GTAC	2 cut(s)	6, 1055
RseI	CAYNNNNRTG	1 cut(s)	968
SapI	GCTCTTC	1 cut(s)	681
SaqAI	TTAA	5 cut(s)	456, 785, 803, 957, 1050
SatI	GCNGC	3 cut(s)	89, 470, 936
Sau3AI	GATC	4 cut(s)	141, 190, 493, 949
Sau96I	GGNCC	2 cut(s)	70, 165
SchI	GAGTC	4 cut(s)	806, 823, 935, 1078
ScrFI	CCNGG	1 cut(s)	653
SduI	GDGCHC	3 cut(s)	54, 676, 895
SfaNI	GCATC	2 cut(s)	743, 1091
SfuI	TTCGAA	1 cut(s)	386
SinI	GGWCC	2 cut(s)	70, 165
SmiMI	CAYNNNNRTG	1 cut(s)	968
SmlI	CTYRAG	2 cut(s)	874, 956
SmoI	CTYRAG	2 cut(s)	874, 956
Sse9I	AATT	9 cut(s)	43, 182, 195, 257, 305, 359, 575, 695, 772
SsiI	CCGC	4 cut(s)	139, 212, 469, 854
StyD4I	CCNGG	1 cut(s)	651
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	5 cut(s)	10, 702, 848, 916, 1027
TaqI	TCGA	2 cut(s)	386, 1097
TasI	AATT	9 cut(s)	43, 182, 195, 257, 305, 359, 575, 695, 772
TauI	GCSGC	1 cut(s)	472
TfiI	GAWTC	3 cut(s)	374, 383, 586
Tru1I	TTAA	5 cut(s)	456, 785, 803, 957, 1050
Tru9I	TTAA	5 cut(s)	456, 785, 803, 957, 1050
TscAI	CASTG	1 cut(s)	851
TseFI	GTSAC	1 cut(s)	910
TseI	GCWGC	2 cut(s)	88, 935
Tsp45I	GTSAC	1 cut(s)	910
TspDTI	ATGAA	1 cut(s)	675
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	851
Vha464I	CTTAAG	1 cut(s)	956
VpaK11BI	GGWCC	2 cut(s)	70, 165
XapI	RAATTY	3 cut(s)	195, 305, 772
XmnI	GAANNNNTTC	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.