Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006897

Physical Location & Seq

Genomic Coordinates Reverse (-)

33533131 .. 33535555

Gene Structure 2425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G365300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCTGTTAAGGAGCGCTCGAGAGCCTCCTCTCAAAGTCAAAACTGGCAGAACACATTCAACGGTTTGGTGCAGATGATACGGGATCAACAATCACAGCTCGAGACACTGGCCAAAGACCGACAACTCCTTGAAGATCGCGTCCGAACGCAAAACGAGCGATGGACCTATGATATTCGTCTCTTGGAAGATCAAATCTCCCAGATGAAGGGGGATTTGGAATTTCAAGAGTTGGCGGGCTCCCTTCAGGCGGCCAAGTTTGAGTTGGTCCTGGGATTGAAGCAACGAGAGGGTTATCTCACCAAACTCAAATTAGAATACACGGACAGTGAGTTAGAAGGTTTCAAAGGATGGTTTGACTTATACAATAAATTCTCTGATTTAAAGGGAGGAGGCGAAGATGGGGATAAAAGAATTAGCAATACAAAGTCTCCCAAAAAAAGCAAGCAAGAGAAACAGCGTTCTAAACAATTGGAAGATGACCTCAGGAGGTTAAATCAGCAGTACGATAAGCTCGCTTCAGAAAAGAGCTCGGAGGTATCTGCACTATTGGCAGAGAAGAAGTTTGTGTGGAATCAGTATAAGATTATGGAAGAAAATTACACCACTAAACTAAGGAGCAAGCATTCTGAAGTTGAGCAGGCGGAGGCAAAGATACAAAATTTTCTTGCTCATATGGAGCACTTACAATCCTCAAATAAGGAAAAGGATGGCAAGATTGCAATATTAATAAGTAAAGTTGCTAAGATGGAGTCTGATTCAAATAAGTTGAAGGAAGAAATTTCCAAACTTTCAACGGAATTGGATTTGTTAAGAAAGTCCACAAGTGCTTCCTCTACTCCTCTCTTGAACCATTGCACGGCAGGAACTAGAACTTGTAGCTTGAGAGGCAACAATAGTGCTAAGGATAGAACCAATGTAACTGTGAAGAAAGATTCATCTGCTGCACAACTTCCTGATCCCATAAAGGACACCAGAAAGGGGAGCAGCATCTCAAAGAGAAAAATAGACGATGTTATAACGATTTCGGAGACTCCAAAGTTGTTCTCATCCAGATTTAAAGTACCGAAATTGAAGAATGCATCACCAGGCATAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

367

Amino Acids

41.79

Weight (kDa)

9.45

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19980
fragaria_vesca	FvH4_2g38440
malus_domestica	MD00G1092800.v1.1 MD08G1013200.v1.1 MD15G1012000.v1.1
prunus_persica	Prupe.1G365300_v2.0.a1
pyrus_communis	pycom08g01130 pycom15g01070
rosa_chinensis	RchiOBHm_Chr6g0302861
rosa_laevigata	RLG00000001570 RLG00000011130
rosa_multiflora	Rmu_ssc0000141.1_g000013 Rmu_ssc0000460.1_g000010
rosa_roxburghii	Rroxscaffold_2G00146980 Rroxscaffold_4G00295210 Rroxscaffold_7G00165210 Rroxscaffold_7G00165230
rosa_rugosa	Rorug06G0317800
rosa_samantha	Rh1BG155400 Rh6AG431100 Rh6BG471500 Rh6BG471600 Rh6CG443500 Rh6DG430200 Rh7CG342300
rosa_wichuraiana	Rw6G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1019
AccII	CGCG	1 cut(s)	141
AciI	CCGC	3 cut(s)	236, 251, 644
AclWI	GGATC	2 cut(s)	93, 953
AcoI	YGGCCR	2 cut(s)	111, 252
AcsI	RAATTY	4 cut(s)	221, 371, 661, 780
AcuI	CTGAAG	3 cut(s)	230, 504, 651
AfaI	GTAC	2 cut(s)	506, 1065
AfeI	AGCGCT	1 cut(s)	17
AfiI	CCNNNNNNNGG	4 cut(s)	208, 250, 859, 981
AjnI	CCWGG	2 cut(s)	270, 1087
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	4 cut(s)	100, 514, 531, 882
AluI	AGCT	4 cut(s)	100, 514, 531, 882
Alw21I	GWGCWC	2 cut(s)	533, 684
Alw26I	GTCTC	4 cut(s)	98, 185, 435, 1025
AlwI	GGATC	2 cut(s)	93, 953
Ama87I	CYCGRG	2 cut(s)	19, 101
Aor51HI	AGCGCT	1 cut(s)	17
AoxI	GGCC	2 cut(s)	111, 252
ApeKI	GCWGC	2 cut(s)	944, 987
ApoI	RAATTY	4 cut(s)	221, 371, 661, 780
AseI	ATTAAT	1 cut(s)	728
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	165, 268
AsuHPI	GGTGA	2 cut(s)	292, 1077
AvaI	CYCGRG	2 cut(s)	19, 101
AvaII	GGWCC	2 cut(s)	165, 268
AxyI	CCTNAGG	1 cut(s)	485
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	242, 533
Bbv12I	GWGCWC	2 cut(s)	533, 684
BbvI	GCAGC	2 cut(s)	931, 999
BccI	CCATC	5 cut(s)	156, 345, 395, 704, 742
BceAI	ACGGC	1 cut(s)	876
BciT130I	CCWGG	2 cut(s)	272, 1089
BcoDI	GTCTC	4 cut(s)	98, 185, 435, 1025
BfaI	CTAG	1 cut(s)	870
BfoI	RGCGCY	1 cut(s)	19
BisI	GCNGC	3 cut(s)	252, 945, 988
BlsI	GCNGC	3 cut(s)	253, 946, 989
Bme1390I	CCNGG	2 cut(s)	272, 1089
Bme18I	GGWCC	2 cut(s)	165, 268
BmeT110I	CYCGRG	2 cut(s)	19, 101
BmgT120I	GGNCC	2 cut(s)	165, 268
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	2 cut(s)	272, 1089
BmsI	GCATC	2 cut(s)	999, 1091
Bpu10I	CCTNAGC	1 cut(s)	903
BpuEI	CTTGAG	1 cut(s)	904
BsaJI	CCNNGG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 250, 859, 981
Bse1I	ACTGG	2 cut(s)	50, 114
Bse21I	CCTNAGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	853
BseBI	CCWGG	2 cut(s)	272, 1089
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	3 cut(s)	356, 715, 1049
BseLI	CCNNNNNNNGG	4 cut(s)	208, 250, 859, 981
BseMI	GCAATG	1 cut(s)	853
BseMII	CTCAG	1 cut(s)	499
BseNI	ACTGG	2 cut(s)	50, 114
BseRI	GAGGAG	3 cut(s)	19, 405, 831
BseXI	GCAGC	2 cut(s)	931, 999
BsgI	GTGCAG	3 cut(s)	92, 528, 930
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	113, 254
BsiHKAI	GWGCWC	2 cut(s)	533, 684
BsiHKCI	CYCGRG	2 cut(s)	19, 101
BslI	CCNNNNNNNGG	4 cut(s)	208, 250, 859, 981
BsmAI	GTCTC	4 cut(s)	98, 185, 435, 1025
BsmBI	CGTCTC	1 cut(s)	185
BsmI	GAATGC	2 cut(s)	625, 1084
BsnI	GGCC	2 cut(s)	113, 254
BsoBI	CYCGRG	2 cut(s)	19, 101
Bsp1286I	GDGCHC	3 cut(s)	242, 533, 684
Bsp143I	GATC	4 cut(s)	85, 136, 190, 958
BspACI	CCGC	3 cut(s)	236, 251, 644
BspANI	GGCC	2 cut(s)	113, 254
BspCNI	CTCAG	1 cut(s)	498
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	241
BspPI	GGATC	2 cut(s)	93, 953
BsrDI	GCAATG	1 cut(s)	853
BsrI	ACTGG	2 cut(s)	50, 114
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	4 cut(s)	85, 136, 190, 958
Bst2UI	CCWGG	2 cut(s)	272, 1089
Bst4CI	ACNGT	3 cut(s)	65, 329, 925
BstC8I	GCNNGC	5 cut(s)	238, 446, 516, 623, 642
BstDEI	CTNAG	4 cut(s)	485, 614, 744, 903
BstF5I	GGATG	3 cut(s)	356, 715, 1049
BstFNI	CGCG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	4 cut(s)	88, 139, 193, 961
BstMAI	GTCTC	4 cut(s)	98, 185, 435, 1025
BstMBI	GATC	4 cut(s)	85, 136, 190, 958
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 551, 888
BstNI	CCWGG	2 cut(s)	272, 1089
BstSCI	CCNGG	2 cut(s)	270, 1087
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	931, 999
Bsu36I	CCTNAGG	1 cut(s)	485
BsuRI	GGCC	2 cut(s)	113, 254
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	3 cut(s)	356, 715, 1049
BtsIMutI	CAGTG	2 cut(s)	107, 334
Cac8I	GCNNGC	5 cut(s)	238, 446, 516, 623, 642
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	165, 268
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	2 cut(s)	505, 1064
CviJI	RGCY	9 cut(s)	5, 26, 100, 113, 240, 254, 514, 531, 882
CviKI_1	RGCY	9 cut(s)	5, 26, 100, 113, 240, 254, 514, 531, 882
CviQI	GTAC	2 cut(s)	505, 1064
DdeI	CTNAG	4 cut(s)	485, 614, 744, 903
DpnI	GATC	4 cut(s)	87, 138, 192, 960
DpnII	GATC	4 cut(s)	85, 136, 190, 958
DraI	TTTAAA	2 cut(s)	384, 1060
EaeI	YGGCCR	2 cut(s)	111, 252
EciI	GGCGGA	1 cut(s)	659
Ecl136II	GAGCTC	1 cut(s)	531
Eco24I	GRGCYC	2 cut(s)	242, 533
Eco47I	GGWCC	2 cut(s)	165, 268
Eco47III	AGCGCT	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	531
Eco57I	CTGAAG	3 cut(s)	230, 504, 651
Eco81I	CCTNAGG	1 cut(s)	485
Eco88I	CYCGRG	2 cut(s)	19, 101
EcoICRI	GAGCTC	1 cut(s)	531
EcoRII	CCWGG	2 cut(s)	270, 1087
EcoT22I	ATGCAT	1 cut(s)	1084
EcoT38I	GRGCYC	2 cut(s)	242, 533
Esp3I	CGTCTC	1 cut(s)	185
FaiI	YATR	9 cut(s)	171, 364, 582, 590, 675, 677, 965, 1019, 1094
FauI	CCCGC	1 cut(s)	229
FauNDI	CATATG	1 cut(s)	675
Fnu4HI	GCNGC	3 cut(s)	252, 945, 988
FokI	GGATG	3 cut(s)	363, 722, 1036
FriOI	GRGCYC	2 cut(s)	242, 533
Fsp4HI	GCNGC	3 cut(s)	252, 945, 988
FspBI	CTAG	1 cut(s)	870
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	3 cut(s)	252, 945, 988
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	113, 254
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	18
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	5 cut(s)	574, 752, 758, 935, 1033
HphI	GGTGA	2 cut(s)	292, 1077
Hpy166II	GTNNAC	1 cut(s)	822
Hpy188I	TCNGA	7 cut(s)	146, 379, 523, 535, 631, 757, 1030
Hpy188III	TCNNGA	7 cut(s)	21, 103, 227, 487, 847, 956, 1053
Hpy8I	GTNNAC	1 cut(s)	822
HpyAV	CCTTC	4 cut(s)	202, 254, 332, 766
HpyCH4III	ACNGT	3 cut(s)	65, 329, 925
HpyCH4V	TGCA	6 cut(s)	73, 545, 722, 858, 947, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 551, 888
HpyF3I	CTNAG	4 cut(s)	485, 614, 744, 903
HspAI	GCGC	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	85, 136, 190, 958
LmnI	GCTCC	5 cut(s)	13, 245, 618, 679, 984
Lsp1109I	GCAGC	2 cut(s)	931, 999
LweI	GCATC	2 cut(s)	999, 1091
MaeI	CTAG	1 cut(s)	870
MaeIII	GTNAC	1 cut(s)	919
MalI	GATC	4 cut(s)	87, 138, 192, 960
MboI	GATC	4 cut(s)	85, 136, 190, 958
MboII	GAAGA	9 cut(s)	146, 200, 410, 488, 571, 605, 788, 940, 1087
MfeI	CAATTG	1 cut(s)	470
MhlI	GDGCHC	3 cut(s)	242, 533, 684
MlsI	TGGCCA	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	761, 1027
Mox20I	TGGCCA	1 cut(s)	113
Mph1103I	ATGCAT	1 cut(s)	1084
MroXI	GAANNNNTTC	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	6 cut(s)	9, 383, 494, 728, 812, 1059
Msp20I	TGGCCA	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	272, 1089
MunI	CAATTG	1 cut(s)	470
Mva1269I	GAATGC	2 cut(s)	625, 1084
MvaI	CCWGG	2 cut(s)	272, 1089
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	157, 551, 888
NdeI	CATATG	1 cut(s)	675
NdeII	GATC	4 cut(s)	85, 136, 190, 958
NlaIV	GGNNCC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	1084
PaeR7I	CTCGAG	2 cut(s)	19, 101
PctI	GAATGC	2 cut(s)	625, 1084
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	3 cut(s)	574, 758, 935
PkrI	GCNGC	3 cut(s)	253, 946, 989
PleI	GAGTC	2 cut(s)	760, 1027
PpsI	GAGTC	2 cut(s)	760, 1027
PshBI	ATTAAT	1 cut(s)	728
PsiI	TTATAA	1 cut(s)	1019
Psp124BI	GAGCTC	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	270, 1087
PspGI	CCWGG	2 cut(s)	270, 1087
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	2 cut(s)	165, 268
RsaI	GTAC	2 cut(s)	506, 1065
RsaNI	GTAC	2 cut(s)	505, 1064
SacI	GAGCTC	1 cut(s)	533
SaqAI	TTAA	6 cut(s)	9, 383, 494, 728, 812, 1059
SatI	GCNGC	3 cut(s)	252, 945, 988
Sau3AI	GATC	4 cut(s)	85, 136, 190, 958
Sau96I	GGNCC	2 cut(s)	165, 268
SchI	GAGTC	2 cut(s)	761, 1027
ScrFI	CCNGG	2 cut(s)	272, 1089
SduI	GDGCHC	3 cut(s)	242, 533, 684
SetI	ASST	9 cut(s)	102, 170, 343, 486, 494, 516, 533, 540, 884
SfaNI	GCATC	2 cut(s)	999, 1091
Sfr274I	CTCGAG	2 cut(s)	19, 101
SinI	GGWCC	2 cut(s)	165, 268
SlaI	CTCGAG	2 cut(s)	19, 101
SmlI	CTYRAG	3 cut(s)	19, 101, 883
SmoI	CTYRAG	3 cut(s)	19, 101, 883
SsiI	CCGC	3 cut(s)	236, 251, 644
SspI	AATATT	1 cut(s)	726
SspMI	CTAG	1 cut(s)	870
SstI	GAGCTC	1 cut(s)	533
StyD4I	CCNGG	2 cut(s)	270, 1087
TaaI	ACNGT	3 cut(s)	65, 329, 925
TaqI	TCGA	2 cut(s)	20, 102
TaqII	GACCGA	1 cut(s)	135
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	574, 758, 935
Tru1I	TTAA	6 cut(s)	9, 383, 494, 728, 812, 1059
Tru9I	TTAA	6 cut(s)	9, 383, 494, 728, 812, 1059
TscAI	CASTG	2 cut(s)	114, 334
TseI	GCWGC	2 cut(s)	944, 987
TspDTI	ATGAA	2 cut(s)	221, 927
TspGWI	ACGGA	2 cut(s)	338, 812
TspRI	CASTG	2 cut(s)	114, 334
VpaK11BI	GGWCC	2 cut(s)	165, 268
VspI	ATTAAT	1 cut(s)	728
XapI	RAATTY	4 cut(s)	221, 371, 661, 780
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XhoI	CTCGAG	2 cut(s)	19, 101
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	870
Zsp2I	ATGCAT	1 cut(s)	1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.