Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006897

Physical Location & Seq

Genomic Coordinates Reverse (-)

67906467 .. 67908858

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG471600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGTACCGTAACGCGCTCTAAATCGTCGTCGGAAAGTCAAAATTGGGAGCACATATTCAACGCCATGGTCCAGATTTTACAGGAGCAGCAGTCCAAGCTGGAGACGATGGCCAAAGAGCGCAAAATGCTCGCCGATCGGATCAGAACGGAACACGACAAGTGGGCCTTCAGCGTCAGCCAATTGCAAGATCAAATTTCCCAGTTGGAGGCGGATTTGGTTACGCAAGAGAAGGGTGGTGTGGTTGAGGTGGCCAAATTGGAGTTGCTTCTGGGCTTGAAGGAAAGAGAGGCTGTTCTCTTCAAATTTCAAAAAGAGGATATAAAGAGGGACTTGGACGATTTTATAAGATGGGTTGAATTACACGCCAAAGAATCCTCTGATTCGAAGGTAGGTGGGGAGAGCAGTAAACGAAAAGGAAGAAATAATAGCAATACAAAGTTGTCCAAAACTATTAATGAAGAAAAGCGGCTTTCTAAAGGTGTGGATGATGATCTGAGAAAGTTACAGCAGGAATATGATAAACTTGCTTTGGAAAAGAAAACTGAGGTATCTGCACTCTTGGCTCAGAAGCAATTCGTGTGGAATCAGTATAATCTTTTGGAAAAAGACTACACCAGTAAACTAAAGAGTAAGCAGTCTGAAGTTGACCAGGCTGATGAAAAGATACAGGCTCTTCTTGCCAGTATGGAGCAATTACAGTCCTCAAACAAAGAAAAGGATGATAAGATTGCATCATTAGAGACTGATTTCACCAAGCTGAAGGAAGAAAATTCCAAAGTTTTAAGGGAACTGGAGTCGTTAAGAAAGTCTGCAAGTGCTTCCACGACTCCTGTTTTGAACCACTGTTCAGCGGGAACCAGAGCATATAACTTGAGAGGCAAAAATAGTGCTCTTGATAGAAGTATTGTGACAGTCAAGAAAGAGTCATCTGCTGCACAACTTACTGATCCTCTTAAAACCACCAAAATGGTACTTTTACTGTCAATACTATTTGTTTCTCCCTTGAAATTTTTAGCTTCTGTGATACATCTGCTAGTGGCTTTGACTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

39.83

Weight (kDa)

8.92

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19980
fragaria_vesca	FvH4_2g38440
malus_domestica	MD00G1092800.v1.1 MD08G1013200.v1.1 MD15G1012000.v1.1
prunus_persica	Prupe.1G365300_v2.0.a1
pyrus_communis	pycom08g01130 pycom15g01070
rosa_chinensis	RchiOBHm_Chr6g0302861
rosa_laevigata	RLG00000001570 RLG00000011130
rosa_multiflora	Rmu_ssc0000141.1_g000013 Rmu_ssc0000460.1_g000010
rosa_roxburghii	Rroxscaffold_2G00146980 Rroxscaffold_4G00295210 Rroxscaffold_7G00165210 Rroxscaffold_7G00165230
rosa_rugosa	Rorug06G0317800
rosa_samantha	Rh1BG155400 Rh6AG431100 Rh6BG471500 Rh6BG471600 Rh6CG443500 Rh6DG430200 Rh7CG342300
rosa_wichuraiana	Rw6G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
Acc65I	GGTACC	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	5
AccII	CGCG	1 cut(s)	16
AciI	CCGC	3 cut(s)	212, 469, 854
AclWI	GGATC	2 cut(s)	149, 944
AcoI	YGGCCR	2 cut(s)	111, 252
AcsI	RAATTY	4 cut(s)	195, 305, 772, 1010
AcuI	CTGAAG	3 cut(s)	154, 663, 782
AfaI	GTAC	2 cut(s)	7, 975
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	7 cut(s)	61, 280, 304, 311, 359, 841, 1009
AjnI	CCWGG	1 cut(s)	651
AluBI	AGCT	3 cut(s)	100, 760, 1019
AluI	AGCT	3 cut(s)	100, 760, 1019
Alw21I	GWGCWC	2 cut(s)	54, 895
Alw26I	GTCTC	2 cut(s)	98, 737
AlwI	GGATC	2 cut(s)	149, 944
AoxI	GGCC	3 cut(s)	111, 165, 252
ApeKI	GCWGC	2 cut(s)	88, 935
ApoI	RAATTY	4 cut(s)	195, 305, 772, 1010
ArsI	GACNNNNNNTTYG	2 cut(s)	820, 852
AseI	ATTAAT	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	575
Asp718I	GGTACC	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	18, 123
AspS9I	GGNCC	2 cut(s)	70, 165
AsuHPI	GGTGA	1 cut(s)	745
AsuII	TTCGAA	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	70
BaeI	ACNNNNGTAYC	2 cut(s)	534, 567
BalI	TGGCCA	2 cut(s)	113, 254
BanI	GGYRCC	1 cut(s)	5
Bbv12I	GWGCWC	2 cut(s)	54, 895
BbvI	GCAGC	2 cut(s)	100, 922
BccI	CCATC	2 cut(s)	103, 345
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	1 cut(s)	653
BcoDI	GTCTC	2 cut(s)	98, 737
BfaI	CTAG	1 cut(s)	1037
BisI	GCNGC	3 cut(s)	89, 470, 936
BlsI	GCNGC	3 cut(s)	90, 471, 937
Bme1390I	CCNGG	1 cut(s)	653
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	70, 165
BmiI	GGNNCC	2 cut(s)	7, 859
BmrFI	CCNGG	1 cut(s)	653
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	743
BmuI	ACTGGG	1 cut(s)	196
BpmI	CTGGAG	2 cut(s)	122, 815
Bpu14I	TTCGAA	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	895
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	4 cut(s)	202, 618, 684, 798
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	2 cut(s)	493, 727
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	3 cut(s)	488, 537, 581
BseNI	ACTGG	4 cut(s)	202, 618, 684, 798
BseXI	GCAGC	2 cut(s)	100, 922
BsgI	GTGCAG	2 cut(s)	540, 921
Bsh1236I	CGCG	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	3 cut(s)	113, 167, 254
BshNI	GGYRCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	2 cut(s)	54, 895
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	2 cut(s)	98, 737
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	3 cut(s)	113, 167, 254
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	54, 895
Bsp143I	GATC	5 cut(s)	136, 141, 190, 493, 949
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	3 cut(s)	212, 469, 854
BspANI	GGCC	3 cut(s)	113, 167, 254
BspCNI	CTCAG	3 cut(s)	489, 538, 580
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	2 cut(s)	7, 859
BspPI	GGATC	2 cut(s)	149, 944
BspQI	GCTCTTC	1 cut(s)	681
BspT104I	TTCGAA	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	5
BsrI	ACTGG	4 cut(s)	202, 618, 684, 798
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	5 cut(s)	136, 141, 190, 493, 949
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	5 cut(s)	10, 702, 848, 916, 984
Bst6I	CTCTTC	2 cut(s)	305, 681
BstBI	TTCGAA	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	4 cut(s)	497, 546, 567, 1050
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	493, 727
BstFNI	CGCG	1 cut(s)	16
BstHHI	GCGC	2 cut(s)	18, 123
BstKTI	GATC	5 cut(s)	139, 144, 193, 496, 952
BstMAI	GTCTC	2 cut(s)	98, 737
BstMBI	GATC	5 cut(s)	136, 141, 190, 493, 949
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 127, 563, 680
BstNI	CCWGG	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	651
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	100, 922
BstXI	CCANNNNNNTGG	1 cut(s)	970
BsuRI	GGCC	3 cut(s)	113, 167, 254
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	493, 727
BtsIMutI	CAGTG	1 cut(s)	844
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	2 cut(s)	18, 123
Cfr13I	GGNCC	2 cut(s)	70, 165
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	6, 974
CspCI	CAANNNNNGTGG	2 cut(s)	563, 598
CviAII	CATG	1 cut(s)	67
CviQI	GTAC	2 cut(s)	6, 974
DdeI	CTNAG	4 cut(s)	497, 546, 567, 1050
DpnI	GATC	5 cut(s)	138, 143, 192, 495, 951
DpnII	GATC	5 cut(s)	136, 141, 190, 493, 949
EaeI	YGGCCR	2 cut(s)	111, 252
Eam1104I	CTCTTC	2 cut(s)	305, 681
EarI	CTCTTC	2 cut(s)	305, 681
EciI	GGCGGA	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	3 cut(s)	154, 663, 782
EcoRII	CCWGG	1 cut(s)	651
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	70
FaiI	YATR	9 cut(s)	56, 68, 323, 347, 519, 594, 689, 868, 870
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 317, 349
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	1 cut(s)	66
FauI	CCCGC	1 cut(s)	847
Fnu4HI	GCNGC	3 cut(s)	89, 470, 936
FokI	GGATG	2 cut(s)	500, 734
Fsp4HI	GCNGC	3 cut(s)	89, 470, 936
FspBI	CTAG	1 cut(s)	1037
GlaI	GCGC	2 cut(s)	17, 122
GluI	GCNGC	3 cut(s)	89, 470, 936
GsuI	CTGGAG	2 cut(s)	122, 815
HaeIII	GGCC	3 cut(s)	113, 167, 254
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	2 cut(s)	18, 123
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	2 cut(s)	16, 121
HinP1I	GCGC	2 cut(s)	16, 121
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HinfI	GANTC	7 cut(s)	374, 383, 586, 797, 829, 926, 1048
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	3 cut(s)	410, 623, 649
Hpy188I	TCNGA	7 cut(s)	34, 141, 146, 382, 498, 570, 643
Hpy188III	TCNNGA	3 cut(s)	73, 896, 919
Hpy8I	GTNNAC	3 cut(s)	410, 623, 649
Hpy99I	CGWCG	2 cut(s)	31, 34
HpyAV	CCTTC	5 cut(s)	178, 226, 274, 382, 757
HpyCH4III	ACNGT	5 cut(s)	10, 702, 848, 916, 984
HpyCH4V	TGCA	5 cut(s)	187, 557, 734, 815, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 127, 563, 680
HpyF3I	CTNAG	4 cut(s)	497, 546, 567, 1050
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	2 cut(s)	16, 121
KpnI	GGTACC	1 cut(s)	9
Kzo9I	GATC	5 cut(s)	136, 141, 190, 493, 949
LguI	GCTCTTC	1 cut(s)	681
LmnI	GCTCC	3 cut(s)	49, 85, 691
Lsp1109I	GCAGC	2 cut(s)	100, 922
LweI	GCATC	1 cut(s)	743
MaeI	CTAG	1 cut(s)	1037
MaeIII	GTNAC	4 cut(s)	10, 220, 504, 910
MalI	GATC	5 cut(s)	138, 143, 192, 495, 951
MboI	GATC	5 cut(s)	136, 141, 190, 493, 949
MboII	GAAGA	5 cut(s)	292, 432, 473, 668, 779
MfeI	CAATTG	1 cut(s)	182
MhlI	GDGCHC	2 cut(s)	54, 895
MlsI	TGGCCA	2 cut(s)	113, 254
MluNI	TGGCCA	2 cut(s)	113, 254
MlyI	GAGTC	4 cut(s)	806, 823, 935, 1042
MmeI	TCCRAC	2 cut(s)	12, 186
Mox20I	TGGCCA	2 cut(s)	113, 254
MroXI	GAANNNNTTC	1 cut(s)	575
MscI	TGGCCA	2 cut(s)	113, 254
MseI	TTAA	4 cut(s)	456, 785, 803, 957
MslI	CAYNNNNRTG	1 cut(s)	968
Msp20I	TGGCCA	2 cut(s)	113, 254
MspA1I	CMGCKG	1 cut(s)	854
MspR9I	CCNGG	1 cut(s)	653
MunI	CAATTG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	4 cut(s)	97, 127, 563, 680
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	5 cut(s)	136, 141, 190, 493, 949
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	2 cut(s)	7, 859
NmuCI	GTSAC	1 cut(s)	910
NspV	TTCGAA	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	681
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	3 cut(s)	374, 383, 586
PkrI	GCNGC	3 cut(s)	90, 471, 937
Ple19I	CGATCG	1 cut(s)	139
PleI	GAGTC	4 cut(s)	805, 823, 934, 1042
PpsI	GAGTC	4 cut(s)	805, 823, 934, 1042
PshBI	ATTAAT	1 cut(s)	456
PsiI	TTATAA	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	2 cut(s)	7, 859
PspPI	GGNCC	2 cut(s)	70, 165
PvuI	CGATCG	1 cut(s)	139
RsaI	GTAC	2 cut(s)	7, 975
RsaNI	GTAC	2 cut(s)	6, 974
RseI	CAYNNNNRTG	1 cut(s)	968
SapI	GCTCTTC	1 cut(s)	681
SaqAI	TTAA	4 cut(s)	456, 785, 803, 957
SatI	GCNGC	3 cut(s)	89, 470, 936
Sau3AI	GATC	5 cut(s)	136, 141, 190, 493, 949
Sau96I	GGNCC	2 cut(s)	70, 165
SchI	GAGTC	4 cut(s)	806, 823, 935, 1042
ScrFI	CCNGG	1 cut(s)	653
SduI	GDGCHC	2 cut(s)	54, 895
SetI	ASST	8 cut(s)	102, 252, 393, 397, 484, 552, 762, 1021
SfaNI	GCATC	1 cut(s)	743
SfuI	TTCGAA	1 cut(s)	386
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	968
SmlI	CTYRAG	1 cut(s)	874
SmoI	CTYRAG	1 cut(s)	874
SsiI	CCGC	3 cut(s)	212, 469, 854
SspMI	CTAG	1 cut(s)	1037
StyD4I	CCNGG	1 cut(s)	651
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	5 cut(s)	10, 702, 848, 916, 984
TaqI	TCGA	1 cut(s)	386
TauI	GCSGC	1 cut(s)	472
TfiI	GAWTC	3 cut(s)	374, 383, 586
Tru1I	TTAA	4 cut(s)	456, 785, 803, 957
Tru9I	TTAA	4 cut(s)	456, 785, 803, 957
TscAI	CASTG	1 cut(s)	851
TseFI	GTSAC	1 cut(s)	910
TseI	GCWGC	2 cut(s)	88, 935
Tsp45I	GTSAC	1 cut(s)	910
TspDTI	ATGAA	2 cut(s)	474, 675
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	851
VpaK11BI	GGWCC	1 cut(s)	70
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	4 cut(s)	195, 305, 772, 1010
XmnI	GAANNNNTTC	1 cut(s)	575
XspI	CTAG	1 cut(s)	1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.