Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006897

Physical Location & Seq

Genomic Coordinates Reverse (-)

17671487 .. 17672147

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001570

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGAGGCTGCATTGAATGCTACATTGAACGATTGCGCTCTAAATGGTCGTCGGAAAGTCAAAATTGGGAGCACATATTCAACGCCATGGTCCAGATTTTACAGGAGCAGCAGTCCAAGCTGGAGACGATGGCCAAAGAGAGCAAAATGCTCGCCGATCGGATCAGAACGGAACACGACAAGTGGGCCTTCAACGTCAGCCAATTACAAAATCAAATTTCCCAGACTGTTGTACCCAATGCTCTGCAGATATCGGTTATGGTGGTGAAGATAGTGGTCATCAGCCGTATTTTATCTGGGATTTCAGCTGTGGTGAGCAAGTTTTGTTCGTGTAAAGTCCCTGGTTATGTGCTTGGTTTAGGGGGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.82

Weight (kDa)

8.76

Isoelectric Point (pI)

63.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19980
fragaria_vesca	FvH4_2g38440
malus_domestica	MD00G1092800.v1.1 MD08G1013200.v1.1 MD15G1012000.v1.1
prunus_persica	Prupe.1G365300_v2.0.a1
pyrus_communis	pycom08g01130 pycom15g01070
rosa_chinensis	RchiOBHm_Chr6g0302861
rosa_laevigata	RLG00000001570 RLG00000011130
rosa_multiflora	Rmu_ssc0000141.1_g000013 Rmu_ssc0000460.1_g000010
rosa_roxburghii	Rroxscaffold_2G00146980 Rroxscaffold_4G00295210 Rroxscaffold_7G00165210 Rroxscaffold_7G00165230
rosa_rugosa	Rorug06G0317800
rosa_samantha	Rh1BG155400 Rh6AG431100 Rh6BG471500 Rh6BG471600 Rh6CG443500 Rh6DG430200 Rh7CG342300
rosa_wichuraiana	Rw6G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	216
AfaI	GTAC	1 cut(s)	234
AgsI	TTSAA	4 cut(s)	17, 29, 82, 193
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	2 cut(s)	121, 308
AluI	AGCT	2 cut(s)	121, 308
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	2 cut(s)	132, 186
ApeKI	GCWGC	2 cut(s)	9, 109
ApoI	RAATTY	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	91, 186
AsuHPI	GGTGA	2 cut(s)	277, 325
AvaII	GGWCC	1 cut(s)	91
BaeI	ACNNNNGTAYC	2 cut(s)	216, 249
BalI	TGGCCA	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	270
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	245
BisI	GCNGC	2 cut(s)	10, 110
BlsI	GCNGC	2 cut(s)	11, 111
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	91, 186
BmrFI	CCNGG	1 cut(s)	342
BpmI	CTGGAG	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	87, 340
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	87, 340
BseXI	GCAGC	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	134, 188
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	134, 188
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	157, 162
Bsp19I	CCATGG	1 cut(s)	87
BspANI	GGCC	2 cut(s)	134, 188
BspMAI	CTGCAG	1 cut(s)	249
BspPI	GGATC	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	87, 340
BssMI	GATC	2 cut(s)	157, 162
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	229
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	2 cut(s)	160, 165
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	2 cut(s)	157, 162
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 118
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	134, 188
BtgI	CCRYGG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	91, 186
Csp6I	GTAC	1 cut(s)	233
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	7 cut(s)	9, 121, 134, 188, 201, 285, 308
CviKI_1	RGCY	7 cut(s)	9, 121, 134, 188, 201, 285, 308
CviQI	GTAC	1 cut(s)	233
DpnI	GATC	2 cut(s)	159, 164
DpnII	GATC	2 cut(s)	157, 162
EaeI	YGGCCR	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	87
Eco32I	GATATC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	340
EcoRV	GATATC	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	1 cut(s)	91
FaiI	YATR	4 cut(s)	77, 89, 260, 348
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	10, 110
Fsp4HI	GCNGC	2 cut(s)	10, 110
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	2 cut(s)	10, 110
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	2 cut(s)	134, 188
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HphI	GGTGA	2 cut(s)	277, 325
Hpy188I	TCNGA	3 cut(s)	55, 162, 167
Hpy188III	TCNNGA	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	12, 247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 118
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	157, 162
LmnI	GCTCC	2 cut(s)	70, 106
LpnPI	CCDG	7 cut(s)	89, 107, 107, 236, 282, 327, 354
Lsp1109I	GCAGC	1 cut(s)	121
MaeII	ACGT	1 cut(s)	195
MalI	GATC	2 cut(s)	159, 164
MboI	GATC	2 cut(s)	157, 162
MboII	GAAGA	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	3 cut(s)	64, 203, 216
MluNI	TGGCCA	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	33
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
Msp20I	TGGCCA	1 cut(s)	134
MspA1I	CMGCKG	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	18, 118
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	157, 162
NlaIII	CATG	1 cut(s)	91
PctI	GAATGC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	11, 111
Ple19I	CGATCG	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspPI	GGNCC	2 cut(s)	91, 186
PstI	CTGCAG	1 cut(s)	249
PvuI	CGATCG	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
SatI	GCNGC	2 cut(s)	10, 110
Sau3AI	GATC	2 cut(s)	157, 162
Sau96I	GGNCC	2 cut(s)	91, 186
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	3 cut(s)	123, 198, 310
SfcI	CTRYAG	1 cut(s)	245
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	3 cut(s)	64, 203, 216
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	198
TasI	AATT	3 cut(s)	64, 203, 216
TseI	GCWGC	2 cut(s)	9, 109
TspGWI	ACGGA	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.