Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006897

Physical Location & Seq

Genomic Coordinates Reverse (-)

7025009 .. 7027857

Gene Structure 2849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011130

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGGTACCGTAACGCGCTCTAAATCGTCGTCGGAAAGTCAAAATTGGGAGCACATATTCAACGCCATGGTCCAGATTTTACAGGAGCAGCAGTCCAAGCTGGAGACGATGGCCAAAGAGCGCAAAATGCTCGCTGATCGGATCAGAACGGAACACGAGAAGTGGGCCTTCAGCGTCAGCCAATTGCAAGATCAAATTTCCCAGTTGGAGGCGGATTTGATCACGCAAGAGAAGGGTGGTGTGGTTGAGGTGGCCAAATTGGAGTTGCTTCTGGGCTTGAAGGAAAGAGAGGCTGTACTCTTCAAATTTCAAAAAGAGGATATAAAGAGGGACTTGGACGATTTTATAAGATGGGTTGAATTACACGCCAAAGAATCCTCTGATTCGAAGGTAGGTGGGGAGAGCAGTAAACGAAAAGGAAGAAATAATAGCAATACAAAGTTGTCCAAAACTATTAATGAAGATAAGCGGCTTTCTAAAGGTGTGGATGATGATCTGGGAAAGTTACAGCAGGAATATGATAAGCTTGCTTTGGAAAAGAAAACTGAGGTATCTGCACTCTTGGCTCAGAAGCAATTCGTGTGGAATCAGTATAATCTTTTGGAAAAAGACTACACCAGTAAACTAAAGAGTAAGCAGTCTGAAGTTGACCAGGCTGATGAAAAGATACAGGCTCTTCTTGCCAGTATGGAGCAATTACAGTCCTCAAACAAGGAAAAGGATGATAAGATTGCATCATTAGAGACTGATTTCACCAAGCTGAAGGACGAAAATTCCAAAGTTTTAAGGGAACTGGAGTTGTTAAGAAAGTCTGCAAGTGCTTCCGTGACTCCTGTTTTGAACCACTGTTCAGCGGGAACCAGAGCATATAACTTGAGAGGCAAAAATAGTGCTCTTGATAGAAGTATTGTGACAGTCAAGAAAGAGTCATCTGCTGCACAACTTACTGATCCTCTGAAGAACACCAAAATGGGGAGGAGCAGTTCAAAGAGAAATGGAGATGATGTTATAACAACTGAGGGAACTGTAAAGTTGTTCTCGTCCAGCTTTAAAATTCAGTTTTGTCACAATCAAATCCAGAAGGAAGGCTCGAGAACCACCTACTATGAACCTGAAGAGCCCCAAATCGGAGATTGCTGCCGGATGGAGCGAGCGCGAGGGTCCGCCTATGCTGATATCTTGCTAGATGAAATCTCGGAGATGGAGGAGAAATCGAGGCCGGTAAGCATGGAAGCTCGGCTGAGGCCACTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

419

Amino Acids

47.53

Weight (kDa)

7.59

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19980
fragaria_vesca	FvH4_2g38440
malus_domestica	MD00G1092800.v1.1 MD08G1013200.v1.1 MD15G1012000.v1.1
prunus_persica	Prupe.1G365300_v2.0.a1
pyrus_communis	pycom08g01130 pycom15g01070
rosa_chinensis	RchiOBHm_Chr6g0302861
rosa_laevigata	RLG00000001570 RLG00000011130
rosa_multiflora	Rmu_ssc0000141.1_g000013 Rmu_ssc0000460.1_g000010
rosa_roxburghii	Rroxscaffold_2G00146980 Rroxscaffold_4G00295210 Rroxscaffold_7G00165210 Rroxscaffold_7G00165230
rosa_rugosa	Rorug06G0317800
rosa_samantha	Rh1BG155400 Rh6AG431100 Rh6BG471500 Rh6BG471600 Rh6CG443500 Rh6DG430200 Rh7CG342300
rosa_wichuraiana	Rw6G037350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	347, 1010
Acc65I	GGTACC	1 cut(s)	5
AccB1I	GGYRCC	1 cut(s)	5
AccII	CGCG	2 cut(s)	16, 1156
AciI	CCGC	4 cut(s)	212, 469, 854, 1164
AclWI	GGATC	2 cut(s)	149, 944
AcoI	YGGCCR	2 cut(s)	111, 252
AcsI	RAATTY	4 cut(s)	195, 305, 772, 1053
AcuI	CTGAAG	5 cut(s)	154, 663, 782, 977, 1134
AfaI	GTAC	2 cut(s)	7, 297
AfiI	CCNNNNNNNGG	3 cut(s)	208, 972, 1127
AgsI	TTSAA	7 cut(s)	61, 280, 304, 311, 359, 841, 987
AjnI	CCWGG	1 cut(s)	651
AloI	GAACNNNNNNTCC	2 cut(s)	967, 999
AluBI	AGCT	5 cut(s)	100, 526, 760, 1047, 1235
AluI	AGCT	5 cut(s)	100, 526, 760, 1047, 1235
Alw21I	GWGCWC	2 cut(s)	54, 895
Alw26I	GTCTC	2 cut(s)	98, 737
AlwI	GGATC	2 cut(s)	149, 944
Ama87I	CYCGRG	1 cut(s)	1090
AoxI	GGCC	5 cut(s)	111, 165, 252, 1217, 1244
ApeKI	GCWGC	3 cut(s)	88, 935, 1137
ApoI	RAATTY	4 cut(s)	195, 305, 772, 1053
ArsI	GACNNNNNNTTYG	2 cut(s)	820, 852
AseI	ATTAAT	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	575
Asp718I	GGTACC	1 cut(s)	5
AspLEI	GCGC	3 cut(s)	18, 123, 1156
AspS9I	GGNCC	3 cut(s)	70, 165, 1161
AsuHPI	GGTGA	1 cut(s)	745
AsuII	TTCGAA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	1090
AvaII	GGWCC	2 cut(s)	70, 1161
BaeI	ACNNNNGTAYC	2 cut(s)	534, 567
BalI	TGGCCA	2 cut(s)	113, 254
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	1122
BauI	CACGAG	1 cut(s)	155
Bbv12I	GWGCWC	2 cut(s)	54, 895
BbvCI	CCTCAGC	1 cut(s)	1241
BbvI	GCAGC	3 cut(s)	100, 922, 1124
BccI	CCATC	4 cut(s)	103, 345, 1138, 1195
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	1 cut(s)	653
BclI	TGATCA	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	98, 737
BfaI	CTAG	1 cut(s)	1184
BisI	GCNGC	4 cut(s)	89, 470, 936, 1138
BlsI	GCNGC	4 cut(s)	90, 471, 937, 1139
Bme1390I	CCNGG	1 cut(s)	653
Bme18I	GGWCC	2 cut(s)	70, 1161
BmeT110I	CYCGRG	1 cut(s)	1090
BmgT120I	GGNCC	3 cut(s)	70, 165, 1161
BmiI	GGNNCC	3 cut(s)	7, 859, 1162
BmrFI	CCNGG	1 cut(s)	653
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	743
BmuI	ACTGGG	1 cut(s)	196
BpmI	CTGGAG	2 cut(s)	122, 815
Bpu10I	CCTNAGC	1 cut(s)	1241
Bpu14I	TTCGAA	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	895
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	66
BsaXI	ACNNNNNCTCC	6 cut(s)	77, 107, 967, 990, 997, 1020
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 972, 1127
Bse118I	RCCGGY	1 cut(s)	1219
Bse1I	ACTGG	4 cut(s)	202, 618, 684, 798
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	3 cut(s)	493, 727, 1149
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	3 cut(s)	208, 972, 1127
BseMII	CTCAG	4 cut(s)	537, 581, 1008, 1232
BseNI	ACTGG	4 cut(s)	202, 618, 684, 798
BseRI	GAGGAG	2 cut(s)	991, 1220
BseXI	GCAGC	3 cut(s)	100, 922, 1124
BsgI	GTGCAG	2 cut(s)	540, 921
Bsh1236I	CGCG	2 cut(s)	16, 1156
BshFI	GGCC	5 cut(s)	113, 167, 254, 1219, 1246
BshNI	GGYRCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	54, 895
BsiHKCI	CYCGRG	1 cut(s)	1090
BsiSI	CCGG	2 cut(s)	1141, 1220
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	3 cut(s)	208, 972, 1127
BsmAI	GTCTC	2 cut(s)	98, 737
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	5 cut(s)	113, 167, 254, 1219, 1246
BsoBI	CYCGRG	1 cut(s)	1090
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	3 cut(s)	54, 895, 1122
Bsp143I	GATC	6 cut(s)	136, 141, 190, 219, 493, 949
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	4 cut(s)	212, 469, 854, 1164
BspANI	GGCC	5 cut(s)	113, 167, 254, 1219, 1246
BspCNI	CTCAG	4 cut(s)	538, 580, 1009, 1233
BspFNI	CGCG	2 cut(s)	16, 1156
BspLI	GGNNCC	3 cut(s)	7, 859, 1162
BspPI	GGATC	2 cut(s)	149, 944
BspQI	GCTCTTC	2 cut(s)	681, 1110
BspT104I	TTCGAA	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	5
BsrFI	RCCGGY	1 cut(s)	1219
BsrI	ACTGG	4 cut(s)	202, 618, 684, 798
BssAI	RCCGGY	1 cut(s)	1219
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	6 cut(s)	136, 141, 190, 219, 493, 949
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	5 cut(s)	10, 702, 848, 916, 1027
Bst6I	CTCTTC	3 cut(s)	305, 681, 1110
BstBI	TTCGAA	1 cut(s)	386
BstC8I	GCNNGC	3 cut(s)	132, 528, 1152
BstDEI	CTNAG	4 cut(s)	546, 567, 1017, 1241
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	3 cut(s)	493, 727, 1149
BstFNI	CGCG	2 cut(s)	16, 1156
BstHHI	GCGC	3 cut(s)	18, 123, 1156
BstKTI	GATC	6 cut(s)	139, 144, 193, 222, 496, 952
BstMAI	GTCTC	2 cut(s)	98, 737
BstMBI	GATC	6 cut(s)	136, 141, 190, 219, 493, 949
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 127, 563, 680
BstNI	CCWGG	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	651
BstUI	CGCG	2 cut(s)	16, 1156
BstV1I	GCAGC	3 cut(s)	100, 922, 1124
BsuRI	GGCC	5 cut(s)	113, 167, 254, 1219, 1246
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	493, 727, 1149
BtsIMutI	CAGTG	1 cut(s)	844
Cac8I	GCNNGC	3 cut(s)	132, 528, 1152
CfoI	GCGC	3 cut(s)	18, 123, 1156
Cfr10I	RCCGGY	1 cut(s)	1219
Cfr13I	GGNCC	3 cut(s)	70, 165, 1161
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	6, 296
CspCI	CAANNNNNGTGG	2 cut(s)	563, 598
CviAII	CATG	2 cut(s)	67, 1228
CviQI	GTAC	2 cut(s)	6, 296
DdeI	CTNAG	4 cut(s)	546, 567, 1017, 1241
DpnI	GATC	6 cut(s)	138, 143, 192, 221, 495, 951
DpnII	GATC	6 cut(s)	136, 141, 190, 219, 493, 949
DraI	TTTAAA	1 cut(s)	1051
EaeI	YGGCCR	2 cut(s)	111, 252
Eam1104I	CTCTTC	3 cut(s)	305, 681, 1110
EarI	CTCTTC	3 cut(s)	305, 681, 1110
EciI	GGCGGA	2 cut(s)	227, 1153
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	1122
Eco32I	GATATC	1 cut(s)	1177
Eco47I	GGWCC	2 cut(s)	70, 1161
Eco57I	CTGAAG	5 cut(s)	154, 663, 782, 977, 1134
Eco88I	CYCGRG	1 cut(s)	1090
EcoRII	CCWGG	1 cut(s)	651
EcoRV	GATATC	1 cut(s)	1177
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	1122
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	2 cut(s)	70, 1231
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 317, 349
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	2 cut(s)	66, 1227
FauI	CCCGC	1 cut(s)	847
FbaI	TGATCA	1 cut(s)	219
Fnu4HI	GCNGC	4 cut(s)	89, 470, 936, 1138
FokI	GGATG	3 cut(s)	500, 734, 1156
FriOI	GRGCYC	1 cut(s)	1122
Fsp4HI	GCNGC	4 cut(s)	89, 470, 936, 1138
FspBI	CTAG	1 cut(s)	1184
GlaI	GCGC	3 cut(s)	17, 122, 1155
GluI	GCNGC	4 cut(s)	89, 470, 936, 1138
GsuI	CTGGAG	2 cut(s)	122, 815
HaeIII	GGCC	5 cut(s)	113, 167, 254, 1219, 1246
HapII	CCGG	2 cut(s)	1141, 1220
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	3 cut(s)	18, 123, 1156
Hin1II	CATG	2 cut(s)	70, 1231
Hin6I	GCGC	3 cut(s)	16, 121, 1154
HinP1I	GCGC	3 cut(s)	16, 121, 1154
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	5 cut(s)	374, 383, 586, 829, 926
HpaII	CCGG	2 cut(s)	1141, 1220
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	3 cut(s)	410, 623, 649
Hpy188I	TCNGA	9 cut(s)	34, 141, 146, 382, 570, 643, 957, 1130, 1198
Hpy188III	TCNNGA	5 cut(s)	73, 896, 919, 1078, 1092
Hpy8I	GTNNAC	3 cut(s)	410, 623, 649
Hpy99I	CGWCG	2 cut(s)	31, 34
HpyAV	CCTTC	7 cut(s)	178, 226, 274, 382, 757, 1075, 1079
HpyCH4III	ACNGT	5 cut(s)	10, 702, 848, 916, 1027
HpyCH4V	TGCA	5 cut(s)	187, 557, 734, 815, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 127, 563, 680
HpyF3I	CTNAG	4 cut(s)	546, 567, 1017, 1241
Hsp92II	CATG	2 cut(s)	70, 1231
HspAI	GCGC	3 cut(s)	16, 121, 1154
KpnI	GGTACC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	6 cut(s)	136, 141, 190, 219, 493, 949
LguI	GCTCTTC	2 cut(s)	681, 1110
LmnI	GCTCC	5 cut(s)	49, 85, 691, 978, 1147
Lsp1109I	GCAGC	3 cut(s)	100, 922, 1124
LweI	GCATC	1 cut(s)	743
MaeI	CTAG	1 cut(s)	1184
MaeIII	GTNAC	5 cut(s)	10, 504, 826, 910, 1064
MalI	GATC	6 cut(s)	138, 143, 192, 221, 495, 951
MboI	GATC	6 cut(s)	136, 141, 190, 219, 493, 949
MboII	GAAGA	6 cut(s)	292, 432, 473, 668, 970, 1127
MfeI	CAATTG	1 cut(s)	182
MhlI	GDGCHC	3 cut(s)	54, 895, 1122
MlsI	TGGCCA	2 cut(s)	113, 254
MluNI	TGGCCA	2 cut(s)	113, 254
MlyI	GAGTC	2 cut(s)	823, 935
MmeI	TCCRAC	2 cut(s)	12, 186
Mox20I	TGGCCA	2 cut(s)	113, 254
MroXI	GAANNNNTTC	1 cut(s)	575
MscI	TGGCCA	2 cut(s)	113, 254
MseI	TTAA	5 cut(s)	456, 785, 803, 1050, 1251
MslI	CAYNNNNRTG	1 cut(s)	968
Msp20I	TGGCCA	2 cut(s)	113, 254
MspA1I	CMGCKG	1 cut(s)	854
MspI	CCGG	2 cut(s)	1141, 1220
MspR9I	CCNGG	1 cut(s)	653
MunI	CAATTG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	2 cut(s)	16, 1156
MwoI	GCNNNNNNNGC	4 cut(s)	97, 127, 563, 680
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	6 cut(s)	136, 141, 190, 219, 493, 949
NlaIII	CATG	2 cut(s)	70, 1231
NlaIV	GGNNCC	3 cut(s)	7, 859, 1162
NmeAIII	GCCGAG	1 cut(s)	1216
NmuCI	GTSAC	3 cut(s)	826, 910, 1064
NspV	TTCGAA	1 cut(s)	386
PaeR7I	CTCGAG	1 cut(s)	1090
PciSI	GCTCTTC	2 cut(s)	681, 1110
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	3 cut(s)	374, 383, 586
PkrI	GCNGC	4 cut(s)	90, 471, 937, 1139
PleI	GAGTC	2 cut(s)	823, 934
PpsI	GAGTC	2 cut(s)	823, 934
PshBI	ATTAAT	1 cut(s)	456
PsiI	TTATAA	2 cut(s)	347, 1010
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	3 cut(s)	7, 859, 1162
PspPI	GGNCC	3 cut(s)	70, 165, 1161
RsaI	GTAC	2 cut(s)	7, 297
RsaNI	GTAC	2 cut(s)	6, 296
RseI	CAYNNNNRTG	1 cut(s)	968
SapI	GCTCTTC	2 cut(s)	681, 1110
SaqAI	TTAA	5 cut(s)	456, 785, 803, 1050, 1251
SatI	GCNGC	4 cut(s)	89, 470, 936, 1138
Sau3AI	GATC	6 cut(s)	136, 141, 190, 219, 493, 949
Sau96I	GGNCC	3 cut(s)	70, 165, 1161
SchI	GAGTC	2 cut(s)	823, 935
ScrFI	CCNGG	1 cut(s)	653
SduI	GDGCHC	3 cut(s)	54, 895, 1122
SfaNI	GCATC	1 cut(s)	743
Sfr274I	CTCGAG	1 cut(s)	1090
SfuI	TTCGAA	1 cut(s)	386
SinI	GGWCC	2 cut(s)	70, 1161
SlaI	CTCGAG	1 cut(s)	1090
SmiMI	CAYNNNNRTG	1 cut(s)	968
SmlI	CTYRAG	2 cut(s)	874, 1090
SmoI	CTYRAG	2 cut(s)	874, 1090
SsiI	CCGC	4 cut(s)	212, 469, 854, 1164
SspMI	CTAG	1 cut(s)	1184
StyD4I	CCNGG	1 cut(s)	651
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	5 cut(s)	10, 702, 848, 916, 1027
TaqI	TCGA	3 cut(s)	386, 1091, 1214
TatI	WGTACW	1 cut(s)	295
TauI	GCSGC	1 cut(s)	472
TfiI	GAWTC	3 cut(s)	374, 383, 586
Tru1I	TTAA	5 cut(s)	456, 785, 803, 1050, 1251
Tru9I	TTAA	5 cut(s)	456, 785, 803, 1050, 1251
TscAI	CASTG	1 cut(s)	851
TseFI	GTSAC	3 cut(s)	826, 910, 1064
TseI	GCWGC	3 cut(s)	88, 935, 1137
Tsp45I	GTSAC	3 cut(s)	826, 910, 1064
TspDTI	ATGAA	4 cut(s)	474, 675, 1122, 1203
TspGWI	ACGGA	2 cut(s)	164, 814
TspRI	CASTG	1 cut(s)	851
VpaK11BI	GGWCC	2 cut(s)	70, 1161
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	4 cut(s)	195, 305, 772, 1053
XhoI	CTCGAG	1 cut(s)	1090
XmnI	GAANNNNTTC	1 cut(s)	575
XspI	CTAG	1 cut(s)	1184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.