AT1G20030

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006511
Physical Location & Seq
Forward (+)
6945425 .. 6947344
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G20030.1

Sequence Viewer

Length: 900 bp
ATGTCAAGGAGCTTCACATTTTCAAACAAATGCGATTACACAGTGTGGCCGGGAATTCTATCTAACGCCGGAGTTTCTCCATTACCAACCACCGGCTTCGTCCTCCTGAAAGGCGAGACGCGTACAATCAACGCACCGTCATCATGGGGGGGTCGTTTCTGGGGAAGAACACTCTGCTCAACCGATTCCGATGGAAAATTCTCGTGTGCCACCGGAGATTGCGGCTCCGGAAAAATCGAATGCTCCGGCGCTGGAGCTGCTCCTCCTGCGACTTTAGCTGAATTCACTCTCGATGGCTCCGGAGGACTCGATTTCTACGATGTCAGTCTCGTCGACGGCTACAATGTCCAGATGCTGGTGGTTCCTCAAGGCGGCTCCGGTCAGAATTGCAGCAGCACCGGCTGCGTCGTCGATTTAAACGGATCTTGCCCGTCGGAGCTAAGGGTGAATAGCGTCGACGGGAAGGAGGCGGTGGCGATGGCGTGTAAAAGTGCGTGCGAGGCGTTTCGGCAGCCGGAGTATTGCTGCAGCGGCGCGTTTGGATCGCCTGACACGTGTAAGCCGTCTACGTACTCGCGGATCTTCAAGAGCGCGTGTCCACGCGCCTATAGCTACGCGTATGACGATAAGTCTAGTACATTTACGTGCGCGAAATCTCCCAACTACGTCATCACTTTCTGTCCTTCTCCCAACACCAGCCTAAAATCAGCTGAGGAACACAGCACAGAGACAATGACGACGACAAGTCCAAGTTCCGGCAGTACGACGTCGTCGCAGATGGTCTACGAAGGTGCTCTGGACGAAAGCAGTGGTTCACCATCTACGTATCACGGCGTATCACGAGCAATCACAGTCGTTCTTCTCTCGCTTGCTTTTTGTCGTATGTGGTGGTTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

299

Amino Acids

31.56

Weight (kDa)

5.12

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 9 - 228 1.7e-85 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 770
AccB7I CCANNNNNTGG 1 cut(s) 355
AccI GTMKAC 4 cut(s) 333, 456, 566, 783
AccII CGCG 7 cut(s) 121, 536, 577, 593, 603, 617, 650
AccIII TCCGGA 2 cut(s) 227, 299
AciI CCGC 5 cut(s) 222, 372, 470, 531, 577
AclWI GGATC 3 cut(s) 430, 550, 587
AcoI YGGCCR 1 cut(s) 47
AcsI RAATTY 3 cut(s) 54, 197, 281
AcvI CACGTG 1 cut(s) 555
AcyI GRCGYC 1 cut(s) 767
AdeI CACNNNGTG 1 cut(s) 45
AfaI GTAC 4 cut(s) 124, 572, 637, 763
AfiI CCNNNNNNNGG 4 cut(s) 92, 355, 371, 755
AflIII ACRYGT 4 cut(s) 119, 552, 554, 615
AgsI TTSAA 2 cut(s) 24, 586
AhdI GACNNNNNGTC 2 cut(s) 628, 744
AluBI AGCT 6 cut(s) 12, 257, 278, 439, 612, 710
AluI AGCT 6 cut(s) 12, 257, 278, 439, 612, 710
Alw21I GWGCWC 1 cut(s) 796
Alw26I GTCTC 3 cut(s) 110, 332, 722
AlwI GGATC 3 cut(s) 430, 550, 587
AlwNI CAGNNNCTG 1 cut(s) 355
Aor13HI TCCGGA 2 cut(s) 227, 299
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 7 cut(s) 257, 390, 393, 402, 511, 525, 528
ApoI RAATTY 3 cut(s) 54, 197, 281
AspLEI GCGC 5 cut(s) 251, 536, 593, 605, 650
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 2 cut(s) 457, 807
BauI CACGAG 2 cut(s) 202, 840
BbrPI CACGTG 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 796
BbvCI CCTCAGC 1 cut(s) 711
BbvI GCAGC 7 cut(s) 244, 389, 402, 405, 512, 523, 540
BccI CCATC 5 cut(s) 185, 287, 472, 772, 826
BceAI ACGGC 3 cut(s) 352, 547, 847
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 3 cut(s) 110, 332, 722
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 2 cut(s) 526, 607
BfoI RGCGCY 1 cut(s) 252
Bme1390I CCNGG 1 cut(s) 51
BmeRI GACNNNNNGTC 2 cut(s) 628, 744
BmiI GGNNCC 4 cut(s) 226, 298, 363, 376
BmrFI CCNGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 273
Bpu10I CCTNAGC 2 cut(s) 440, 711
BpuEI CTTGAG 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 51
BsaAI YACGTR 4 cut(s) 555, 570, 645, 825
BsaHI GRCGYC 1 cut(s) 767
BsaWI WCCGGW 4 cut(s) 212, 227, 299, 377
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 355, 371, 755
Bse118I RCCGGY 2 cut(s) 92, 398
BseAI TCCGGA 2 cut(s) 227, 299
BseLI CCNNNNNNNGG 4 cut(s) 92, 355, 371, 755
BseMII CTCAG 1 cut(s) 702
BseRI GAGGAG 1 cut(s) 252
BseXI GCAGC 7 cut(s) 244, 389, 402, 405, 512, 523, 540
Bsh1236I CGCG 7 cut(s) 121, 536, 577, 593, 603, 617, 650
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 796
BslI CCNNNNNNNGG 4 cut(s) 92, 355, 371, 755
BsmAI GTCTC 3 cut(s) 110, 332, 722
BsmBI CGTCTC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 245
BsnI GGCC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 796
Bsp13I TCCGGA 2 cut(s) 227, 299
Bsp143I GATC 3 cut(s) 422, 542, 579
BspACI CCGC 5 cut(s) 222, 372, 470, 531, 577
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 703
BspEI TCCGGA 2 cut(s) 227, 299
BspFNI CGCG 7 cut(s) 121, 536, 577, 593, 603, 617, 650
BspLI GGNNCC 4 cut(s) 226, 298, 363, 376
BspMAI CTGCAG 1 cut(s) 530
BspPI GGATC 3 cut(s) 430, 550, 587
BsrFI RCCGGY 2 cut(s) 92, 398
BssAI RCCGGY 2 cut(s) 92, 398
BssMI GATC 3 cut(s) 422, 542, 579
BssNI GRCGYC 1 cut(s) 767
BssSI CACGAG 2 cut(s) 202, 840
Bst2BI CACGAG 2 cut(s) 202, 840
Bst4CI ACNGT 3 cut(s) 43, 138, 853
BstACI GRCGYC 1 cut(s) 767
BstAPI GCANNNNNTGC 1 cut(s) 402
BstBAI YACGTR 4 cut(s) 555, 570, 645, 825
BstC8I GCNNGC 2 cut(s) 496, 870
BstDEI CTNAG 2 cut(s) 440, 711
BstFNI CGCG 7 cut(s) 121, 536, 577, 593, 603, 617, 650
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 5 cut(s) 251, 536, 593, 605, 650
BstKTI GATC 3 cut(s) 425, 545, 582
BstMAI GTCTC 3 cut(s) 110, 332, 722
BstMBI GATC 3 cut(s) 422, 542, 579
BstMWI GCNNNNNNNGC 8 cut(s) 257, 266, 275, 399, 402, 500, 531, 609
BstSCI CCNGG 1 cut(s) 49
BstSFI CTRYAG 2 cut(s) 526, 607
BstSNI TACGTA 2 cut(s) 570, 825
BstUI CGCG 7 cut(s) 121, 536, 577, 593, 603, 617, 650
BstV1I GCAGC 7 cut(s) 244, 389, 402, 405, 512, 523, 540
BstX2I RGATCY 2 cut(s) 422, 579
BstYI RGATCY 2 cut(s) 422, 579
BsuRI GGCC 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 491
BtsI GCAGTG 1 cut(s) 814
BtsIMutI CAGTG 2 cut(s) 48, 814
Cac8I GCNNGC 2 cut(s) 496, 870
CaiI CAGNNNCTG 1 cut(s) 355
CfoI GCGC 5 cut(s) 251, 536, 593, 605, 650
Cfr10I RCCGGY 2 cut(s) 92, 398
CseI GACGC 3 cut(s) 127, 394, 442
Csp6I GTAC 4 cut(s) 123, 571, 636, 762
CviAII CATG 1 cut(s) 144
CviQI GTAC 4 cut(s) 123, 571, 636, 762
DdeI CTNAG 2 cut(s) 440, 711
DpnI GATC 3 cut(s) 424, 544, 581
DpnII GATC 3 cut(s) 422, 542, 579
DraI TTTAAA 1 cut(s) 417
DraIII CACNNNGTG 1 cut(s) 45
DriI GACNNNNNGTC 2 cut(s) 628, 744
EaeI YGGCCR 1 cut(s) 47
Eam1105I GACNNNNNGTC 2 cut(s) 628, 744
Eco105I TACGTA 2 cut(s) 570, 825
Eco72I CACGTG 1 cut(s) 555
EcoRI GAATTC 2 cut(s) 54, 281
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 1 cut(s) 147
FaiI YATR 4 cut(s) 145, 609, 621, 884
FatI CATG 1 cut(s) 143
FblI GTMKAC 4 cut(s) 333, 456, 566, 783
FspBI CTAG 1 cut(s) 633
GlaI GCGC 5 cut(s) 250, 535, 592, 604, 649
GsuI CTGGAG 1 cut(s) 273
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 1 cut(s) 49
HgaI GACGC 3 cut(s) 127, 394, 442
HhaI GCGC 5 cut(s) 251, 536, 593, 605, 650
Hin1I GRCGYC 1 cut(s) 767
Hin1II CATG 1 cut(s) 147
Hin6I GCGC 5 cut(s) 249, 534, 591, 603, 648
HinP1I GCGC 5 cut(s) 249, 534, 591, 603, 648
HincII GTYRAC 2 cut(s) 334, 457
HindII GTYRAC 2 cut(s) 334, 457
HinfI GANTC 2 cut(s) 185, 306
HphI GGTGA 2 cut(s) 457, 807
Hpy166II GTNNAC 6 cut(s) 334, 457, 567, 599, 784, 815
Hpy188I TCNGA 4 cut(s) 190, 384, 436, 899
Hpy188III TCNNGA 8 cut(s) 106, 228, 290, 300, 349, 586, 797, 840
Hpy8I GTNNAC 6 cut(s) 334, 457, 567, 599, 784, 815
HpyAV CCTTC 3 cut(s) 457, 693, 782
HpyCH4III ACNGT 3 cut(s) 43, 138, 853
HpyCH4IV ACGT 6 cut(s) 554, 569, 644, 666, 767, 824
HpyCH4V TGCA 2 cut(s) 390, 528
HpyF10VI GCNNNNNNNGC 8 cut(s) 257, 266, 275, 399, 402, 500, 531, 609
HpyF3I CTNAG 2 cut(s) 440, 711
HpySE526I ACGT 6 cut(s) 554, 569, 644, 666, 767, 824
Hsp92I GRCGYC 1 cut(s) 767
Hsp92II CATG 1 cut(s) 147
HspAI GCGC 5 cut(s) 249, 534, 591, 603, 648
Kpn2I TCCGGA 2 cut(s) 227, 299
Kzo9I GATC 3 cut(s) 422, 542, 579
LmnI GCTCC 8 cut(s) 9, 230, 248, 254, 265, 302, 380, 436
Lsp1109I GCAGC 7 cut(s) 244, 389, 402, 405, 512, 523, 540
LweI GCATC 1 cut(s) 342
MaeI CTAG 1 cut(s) 633
MaeII ACGT 6 cut(s) 554, 569, 644, 666, 767, 824
MalI GATC 3 cut(s) 424, 544, 581
MboI GATC 3 cut(s) 422, 542, 579
MboII GAAGA 4 cut(s) 177, 574, 851, 886
MflI RGATCY 2 cut(s) 422, 579
MhlI GDGCHC 1 cut(s) 796
MluCI AATT 4 cut(s) 54, 197, 281, 385
MluI ACGCGT 2 cut(s) 119, 615
MlyI GAGTC 1 cut(s) 300
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 7 cut(s) 113, 273, 296, 375, 460, 493, 706
MroI TCCGGA 2 cut(s) 227, 299
MseI TTAA 1 cut(s) 416
MslI CAYNNNNRTG 1 cut(s) 643
MspA1I CMGCKG 2 cut(s) 531, 710
MspR9I CCNGG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 245
MvnI CGCG 7 cut(s) 121, 536, 577, 593, 603, 617, 650
MwoI GCNNNNNNNGC 8 cut(s) 257, 266, 275, 399, 402, 500, 531, 609
NciI CCSGG 1 cut(s) 51
NdeII GATC 3 cut(s) 422, 542, 579
NlaIII CATG 1 cut(s) 147
NlaIV GGNNCC 4 cut(s) 226, 298, 363, 376
PcsI WCGNNNNNNNCGW 4 cut(s) 315, 551, 560, 621
PctI GAATGC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 185
PflFI GACNNNGTC 1 cut(s) 769
PflMI CCANNNNNTGG 1 cut(s) 355
PleI GAGTC 1 cut(s) 300
PmaCI CACGTG 1 cut(s) 555
PmlI CACGTG 1 cut(s) 555
PpsI GAGTC 1 cut(s) 300
Ppu21I YACGTR 4 cut(s) 555, 570, 645, 825
PspCI CACGTG 1 cut(s) 555
PspN4I GGNNCC 4 cut(s) 226, 298, 363, 376
PstI CTGCAG 1 cut(s) 530
PstNI CAGNNNCTG 1 cut(s) 355
PsuI RGATCY 2 cut(s) 422, 579
PsyI GACNNNGTC 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 4 cut(s) 124, 572, 637, 763
RsaNI GTAC 4 cut(s) 123, 571, 636, 762
RseI CAYNNNNRTG 1 cut(s) 643
SalI GTCGAC 2 cut(s) 332, 455
SaqAI TTAA 1 cut(s) 416
Sau3AI GATC 3 cut(s) 422, 542, 579
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 51
SduI GDGCHC 1 cut(s) 796
SfaNI GCATC 1 cut(s) 342
SfcI CTRYAG 2 cut(s) 526, 607
SgrDI CGTCGACG 2 cut(s) 332, 455
SmiMI CAYNNNNRTG 1 cut(s) 643
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
SnaBI TACGTA 2 cut(s) 570, 825
Sse9I AATT 4 cut(s) 54, 197, 281, 385
SsiI CCGC 5 cut(s) 222, 372, 470, 531, 577
SspMI CTAG 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 49
TaaI ACNGT 3 cut(s) 43, 138, 853
TaiI ACGT 6 cut(s) 557, 572, 647, 669, 770, 827
TaqI TCGA 6 cut(s) 237, 291, 309, 333, 411, 456
TasI AATT 4 cut(s) 54, 197, 281, 385
TatI WGTACW 1 cut(s) 635
TauI GCSGC 3 cut(s) 225, 375, 534
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TscAI CASTG 2 cut(s) 48, 814
TseI GCWGC 7 cut(s) 257, 390, 393, 402, 511, 525, 528
TspGWI ACGGA 1 cut(s) 435
TspRI CASTG 2 cut(s) 48, 814
Tth111I GACNNNGTC 1 cut(s) 769
Van91I CCANNNNNTGG 1 cut(s) 355
XapI RAATTY 3 cut(s) 54, 197, 281
XmiI GTMKAC 4 cut(s) 333, 456, 566, 783
XspI CTAG 1 cut(s) 633
ZraI GACGTC 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.