RchiOBHm_Chr6g0303041

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006511
Physical Location & Seq
Forward (+)
62913789 .. 62916364
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27222

Sequence Viewer

Length: 966 bp
ATGGCTCCTCCATTAACACCCTTCTCGCTCTCTCTATTAACCCTTCTCGGTCTATTAACATCAGGGGCGCTGTCAACGACATTCACAATGGTAAACAAATGCGAGTACACAGTGTGGCCGGGCATTCTCTCCAACGCCGGCATTCCGCCTCTTCCGACCACCGGCTTCGCCCTCCAGAAAAGCGAGACTAAGACCCTAACCGCCCCCGCCTCCTGGGGCGGCCGCTTCTGGGGCCGAACCCTCTGCACCCACGACTCCACCGGAAAATTCTCCTGCGTCACAGGCGATTGCGGCTCCGGAAAGCTAGAATGCTCCGGAAGCGGCGCTGCCCCTCCCGCAACTCTCGCCGAGTTCACCTTAGACGGTGACGGCGGCCTTGACTTCTTTGACGTCAGCCTCGTCGACGGTTACAACCTCCCTATGCTGGTGGTTCCCCAGGGTGGGACCGGCACAAATTGTACCAACACCGGCTGCGTGGTCGACCTTAACGGCGTTTGTCCCTCGGAGCTCAAGGTGACTAGCGCTGCCGGAAGCGAAGGCGTCGCGTGCAAGAGCGCGTGCGAGGCGTTTCAGCAGCCGCAGTACTGTTGCAGCGGCGCGTACGCTACACCCGACACGTGCAAGCCTTCTTCCTACTCGCAAATATTCAAGAACGCGTGCCCTCACGCGTACAGTTACGCATACGACGATAAGACCAGCACCTTCACATGCGCCAATGCCGATTACACCATTACCTTCTGTCCCTCTCCGAACACCAGTCAGAAAGCTTCACAAGGGCAAAGCACCCAGCCGGCTCAGACCAGCAACTCGCCGGAGATAAACAGTACAATGGTGTATGAAGGCTCCGATGACGGAAGCGAAGCATGGTCGTCGTCCACTTCCGTCCACGTGTTCTCATCACATGCAGCCGCGGCAGCCGTCAGCGTCACGGTGGCTGTTTGGCAGTTGTGGCAGCACCTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

321

Amino Acids

33.44

Weight (kDa)

4.7

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 32 - 248 4.3e-86 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
AccI GTMKAC 2 cut(s) 402, 480
AccII CGCG 6 cut(s) 545, 557, 599, 656, 668, 911
AccIII TCCGGA 2 cut(s) 296, 314
AcoI YGGCCR 2 cut(s) 116, 220
AcsI RAATTY 1 cut(s) 266
AcvI CACGTG 2 cut(s) 618, 889
AcyI GRCGYC 2 cut(s) 390, 540
AdeI CACNNNGTG 1 cut(s) 114
AfaI GTAC 6 cut(s) 107, 460, 584, 602, 671, 826
AfeI AGCGCT 1 cut(s) 523
AfiI CCNNNNNNNGG 6 cut(s) 161, 213, 229, 424, 440, 441
AflIII ACRYGT 4 cut(s) 615, 654, 666, 888
AgsI TTSAA 1 cut(s) 649
AjnI CCWGG 2 cut(s) 212, 435
AluBI AGCT 3 cut(s) 304, 508, 767
AluI AGCT 3 cut(s) 304, 508, 767
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 1 cut(s) 179
Aor13HI TCCGGA 2 cut(s) 296, 314
Aor51HI AGCGCT 1 cut(s) 523
AoxI GGCC 4 cut(s) 116, 220, 232, 373
ApeKI GCWGC 8 cut(s) 326, 471, 524, 574, 591, 905, 914, 952
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 6 cut(s) 70, 326, 524, 557, 599, 713
AspS9I GGNCC 2 cut(s) 232, 444
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 346, 377, 526
AvaII GGWCC 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 662
BanII GRGCYC 1 cut(s) 510
BbrPI CACGTG 2 cut(s) 618, 889
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 7 cut(s) 313, 458, 511, 586, 603, 917, 926
BceAI ACGGC 3 cut(s) 385, 505, 902
BcgI CGANNNNNNTGC 4 cut(s) 225, 259, 852, 886
BciT130I CCWGG 2 cut(s) 214, 437
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 2 cut(s) 305, 519
BfoI RGCGCY 3 cut(s) 71, 327, 525
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 3 cut(s) 120, 214, 437
Bme18I GGWCC 1 cut(s) 444
BmgT120I GGNCC 2 cut(s) 232, 444
BmiI GGNNCC 6 cut(s) 6, 233, 295, 432, 445, 844
BmrFI CCNGG 3 cut(s) 120, 214, 437
BpmI CTGGAG 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 120
BsaAI YACGTR 2 cut(s) 618, 889
BsaHI GRCGYC 2 cut(s) 390, 540
BsaJI CCNNGG 5 cut(s) 213, 435, 436, 501, 909
BsaWI WCCGGW 3 cut(s) 260, 296, 314
Bsc4I CCNNNNNNNGG 6 cut(s) 161, 213, 229, 424, 440, 441
Bse118I RCCGGY 5 cut(s) 137, 161, 446, 467, 790
Bse1I ACTGG 1 cut(s) 756
BseAI TCCGGA 2 cut(s) 296, 314
BseBI CCWGG 2 cut(s) 214, 437
BseDI CCNNGG 5 cut(s) 213, 435, 436, 501, 909
BseLI CCNNNNNNNGG 6 cut(s) 161, 213, 229, 424, 440, 441
BseMII CTCAG 1 cut(s) 809
BseNI ACTGG 1 cut(s) 756
BseSI GKGCMC 1 cut(s) 662
BseX3I CGGCCG 1 cut(s) 220
BseXI GCAGC 7 cut(s) 313, 458, 511, 586, 603, 917, 926
BseYI CCCAGC 1 cut(s) 786
BsgI GTGCAG 1 cut(s) 229
Bsh1236I CGCG 6 cut(s) 545, 557, 599, 656, 668, 911
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 4 cut(s) 118, 222, 234, 375
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 510
BsiWI CGTACG 1 cut(s) 600
BslFI GGGAC 3 cut(s) 457, 483, 726
BslI CCNNNNNNNGG 6 cut(s) 161, 213, 229, 424, 440, 441
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 3 cut(s) 457, 483, 726
BsmI GAATGC 3 cut(s) 123, 141, 314
BsnI GGCC 4 cut(s) 118, 222, 234, 375
Bsp1286I GDGCHC 2 cut(s) 510, 662
Bsp13I TCCGGA 2 cut(s) 296, 314
BspANI GGCC 4 cut(s) 118, 222, 234, 375
BspCNI CTCAG 1 cut(s) 808
BspEI TCCGGA 2 cut(s) 296, 314
BspFNI CGCG 6 cut(s) 545, 557, 599, 656, 668, 911
BspLI GGNNCC 6 cut(s) 6, 233, 295, 432, 445, 844
BsrFI RCCGGY 5 cut(s) 137, 161, 446, 467, 790
BsrI ACTGG 1 cut(s) 756
BssAI RCCGGY 5 cut(s) 137, 161, 446, 467, 790
BssECI CCNNGG 5 cut(s) 213, 435, 436, 501, 909
BssNI GRCGYC 2 cut(s) 390, 540
Bst2UI CCWGG 2 cut(s) 214, 437
Bst4CI ACNGT 7 cut(s) 112, 365, 407, 587, 674, 824, 931
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 2 cut(s) 390, 540
BstBAI YACGTR 2 cut(s) 618, 889
BstC8I GCNNGC 6 cut(s) 139, 547, 559, 623, 658, 792
BstDEI CTNAG 3 cut(s) 189, 358, 795
BstDSI CCRYGG 1 cut(s) 909
BstFNI CGCG 6 cut(s) 545, 557, 599, 656, 668, 911
BstH2I RGCGCY 3 cut(s) 71, 327, 525
BstHHI GCGC 6 cut(s) 70, 326, 524, 557, 599, 713
BstMAI GTCTC 1 cut(s) 179
BstMCI CGRYCG 1 cut(s) 223
BstNI CCWGG 2 cut(s) 214, 437
BstNSI RCATGY 2 cut(s) 711, 905
BstSCI CCNGG 3 cut(s) 118, 212, 435
BstSLI GKGCMC 1 cut(s) 662
BstUI CGCG 6 cut(s) 545, 557, 599, 656, 668, 911
BstV1I GCAGC 7 cut(s) 313, 458, 511, 586, 603, 917, 926
BstZI CGGCCG 1 cut(s) 220
BsuRI GGCC 4 cut(s) 118, 222, 234, 375
BtgI CCRYGG 1 cut(s) 909
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 6 cut(s) 139, 547, 559, 623, 658, 792
CciNI GCGGCCGC 1 cut(s) 220
CfoI GCGC 6 cut(s) 70, 326, 524, 557, 599, 713
Cfr10I RCCGGY 5 cut(s) 137, 161, 446, 467, 790
Cfr13I GGNCC 2 cut(s) 232, 444
Cfr42I CCGCGG 1 cut(s) 912
CseI GACGC 3 cut(s) 265, 529, 913
Csp6I GTAC 6 cut(s) 106, 459, 583, 601, 670, 825
CviAII CATG 3 cut(s) 708, 864, 902
CviQI GTAC 6 cut(s) 106, 459, 583, 601, 670, 825
DdeI CTNAG 3 cut(s) 189, 358, 795
DraIII CACNNNGTG 1 cut(s) 114
EaeI YGGCCR 2 cut(s) 116, 220
EagI CGGCCG 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 508
EclXI CGGCCG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 444
Eco47III AGCGCT 1 cut(s) 523
Eco52I CGGCCG 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 508
Eco72I CACGTG 2 cut(s) 618, 889
EcoICRI GAGCTC 1 cut(s) 508
EcoRII CCWGG 2 cut(s) 212, 435
EcoT38I GRGCYC 1 cut(s) 510
FaeI CATG 3 cut(s) 711, 867, 905
FaiI YATR 6 cut(s) 422, 682, 709, 837, 865, 903
FaqI GGGAC 3 cut(s) 457, 483, 726
FatI CATG 3 cut(s) 707, 863, 901
FauI CCCGC 2 cut(s) 214, 343
FblI GTMKAC 2 cut(s) 402, 480
FriOI GRGCYC 1 cut(s) 510
FspBI CTAG 2 cut(s) 305, 519
GlaI GCGC 6 cut(s) 69, 325, 523, 556, 598, 712
GsaI CCCAGC 1 cut(s) 790
GsuI CTGGAG 1 cut(s) 158
HaeII RGCGCY 3 cut(s) 71, 327, 525
HaeIII GGCC 4 cut(s) 118, 222, 234, 375
HgaI GACGC 3 cut(s) 265, 529, 913
HhaI GCGC 6 cut(s) 70, 326, 524, 557, 599, 713
Hin1I GRCGYC 2 cut(s) 390, 540
Hin1II CATG 3 cut(s) 711, 867, 905
Hin6I GCGC 6 cut(s) 68, 324, 522, 555, 597, 711
HinP1I GCGC 6 cut(s) 68, 324, 522, 555, 597, 711
HincII GTYRAC 3 cut(s) 75, 403, 481
HindII GTYRAC 3 cut(s) 75, 403, 481
HindIII AAGCTT 1 cut(s) 765
HinfI GANTC 1 cut(s) 254
HphI GGTGA 3 cut(s) 346, 377, 526
Hpy166II GTNNAC 8 cut(s) 75, 94, 108, 354, 403, 481, 876, 886
Hpy188I TCNGA 6 cut(s) 156, 505, 750, 762, 798, 847
Hpy188III TCNNGA 4 cut(s) 175, 297, 315, 649
Hpy8I GTNNAC 8 cut(s) 75, 94, 108, 354, 403, 481, 876, 886
Hpy99I CGWCG 5 cut(s) 404, 407, 545, 689, 874
HpyAV CCTTC 7 cut(s) 31, 53, 530, 636, 712, 745, 833
HpyCH4III ACNGT 7 cut(s) 112, 365, 407, 587, 674, 824, 931
HpyCH4IV ACGT 3 cut(s) 390, 617, 888
HpyCH4V TGCA 5 cut(s) 246, 549, 591, 621, 905
HpyF3I CTNAG 3 cut(s) 189, 358, 795
HpySE526I ACGT 3 cut(s) 390, 617, 888
Hsp92I GRCGYC 2 cut(s) 390, 540
Hsp92II CATG 3 cut(s) 711, 867, 905
HspAI GCGC 6 cut(s) 68, 324, 522, 555, 597, 711
Kpn2I TCCGGA 2 cut(s) 296, 314
KroI GCCGGC 2 cut(s) 137, 790
KroNI GCCGGC 2 cut(s) 139, 792
KspI CCGCGG 1 cut(s) 912
LmnI GCTCC 5 cut(s) 10, 299, 317, 505, 848
Lsp1109I GCAGC 7 cut(s) 313, 458, 511, 586, 603, 917, 926
MaeI CTAG 2 cut(s) 305, 519
MaeII ACGT 3 cut(s) 390, 617, 888
MaeIII GTNAC 6 cut(s) 277, 365, 407, 514, 674, 925
MboII GAAGA 3 cut(s) 143, 621, 952
MhlI GDGCHC 2 cut(s) 510, 662
MluCI AATT 2 cut(s) 266, 454
MluI ACGCGT 2 cut(s) 654, 666
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 2 cut(s) 156, 179
MroI TCCGGA 2 cut(s) 296, 314
MroNI GCCGGC 2 cut(s) 137, 790
MseI TTAA 4 cut(s) 14, 38, 56, 486
MspA1I CMGCKG 2 cut(s) 594, 911
MspR9I CCNGG 3 cut(s) 120, 214, 437
Mva1269I GAATGC 3 cut(s) 123, 141, 314
MvaI CCWGG 2 cut(s) 214, 437
MvnI CGCG 6 cut(s) 545, 557, 599, 656, 668, 911
NaeI GCCGGC 2 cut(s) 139, 792
NciI CCSGG 1 cut(s) 120
NgoMIV GCCGGC 2 cut(s) 137, 790
NlaIII CATG 3 cut(s) 711, 867, 905
NlaIV GGNNCC 6 cut(s) 6, 233, 295, 432, 445, 844
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 4 cut(s) 277, 365, 514, 925
NotI GCGGCCGC 1 cut(s) 220
NspI RCATGY 2 cut(s) 711, 905
PasI CCCWGGG 1 cut(s) 436
PcsI WCGNNNNNNNCGW 3 cut(s) 396, 609, 684
PctI GAATGC 3 cut(s) 123, 141, 314
PdiI GCCGGC 2 cut(s) 139, 792
Pfl23II CGTACG 1 cut(s) 600
PleI GAGTC 1 cut(s) 248
PmaCI CACGTG 2 cut(s) 618, 889
PmlI CACGTG 2 cut(s) 618, 889
PpsI GAGTC 1 cut(s) 248
Ppu21I YACGTR 2 cut(s) 618, 889
Psp124BI GAGCTC 1 cut(s) 510
Psp6I CCWGG 2 cut(s) 212, 435
PspCI CACGTG 2 cut(s) 618, 889
PspFI CCCAGC 1 cut(s) 786
PspGI CCWGG 2 cut(s) 212, 435
PspLI CGTACG 1 cut(s) 600
PspN4I GGNNCC 6 cut(s) 6, 233, 295, 432, 445, 844
PspPI GGNCC 2 cut(s) 232, 444
RsaI GTAC 6 cut(s) 107, 460, 584, 602, 671, 826
RsaNI GTAC 6 cut(s) 106, 459, 583, 601, 670, 825
SacI GAGCTC 1 cut(s) 510
SacII CCGCGG 1 cut(s) 912
SalI GTCGAC 2 cut(s) 401, 479
SaqAI TTAA 4 cut(s) 14, 38, 56, 486
Sau96I GGNCC 2 cut(s) 232, 444
ScaI AGTACT 1 cut(s) 584
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 3 cut(s) 120, 214, 437
SduI GDGCHC 2 cut(s) 510, 662
Sfr303I CCGCGG 1 cut(s) 912
SgrBI CCGCGG 1 cut(s) 912
SgrDI CGTCGACG 1 cut(s) 401
SinI GGWCC 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 2 cut(s) 266, 454
SspI AATATT 1 cut(s) 645
SspMI CTAG 2 cut(s) 305, 519
SstI GAGCTC 1 cut(s) 510
StyD4I CCNGG 3 cut(s) 118, 212, 435
TaaI ACNGT 7 cut(s) 112, 365, 407, 587, 674, 824, 931
TaiI ACGT 3 cut(s) 393, 620, 891
TaqI TCGA 2 cut(s) 402, 480
TaqII GACCGA 1 cut(s) 38
TasI AATT 2 cut(s) 266, 454
TatI WGTACW 3 cut(s) 105, 582, 824
TauI GCSGC 9 cut(s) 222, 225, 294, 324, 375, 580, 597, 911, 914
Tru1I TTAA 4 cut(s) 14, 38, 56, 486
Tru9I TTAA 4 cut(s) 14, 38, 56, 486
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 4 cut(s) 277, 365, 514, 925
TseI GCWGC 8 cut(s) 326, 471, 524, 574, 591, 905, 914, 952
Tsp45I GTSAC 4 cut(s) 277, 365, 514, 925
TspDTI ATGAA 1 cut(s) 852
TspGWI ACGGA 2 cut(s) 867, 871
TspRI CASTG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 1 cut(s) 266
XceI RCATGY 2 cut(s) 711, 905
XmiI GTMKAC 2 cut(s) 402, 480
XspI CTAG 2 cut(s) 305, 519
ZraI GACGTC 1 cut(s) 391
ZrmI AGTACT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.