AT1G75800

Thaumatin-like protein 1b

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006511
Physical Location & Seq
Forward (+)
28458691 .. 28460961
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75800.1

Sequence Viewer

Length: 993 bp
ATGGCTCTTCCGTTGCCATTGATCTTCCTTATCTTCTCTCATTTGTTCGTTTCTGGAGTTAGATCAACGAGCTTCATTATGGTGAACAAATGCGAATACACAGTCTGGCCTGGACTTTTATCAAACGCCGGAGTTCCACCACTTCCGACGACCGGATTCGTTCTCCAAAAAGGCGAAGAACGAACAATCAGCGCTCCAACTTCATGGGGAGGAAGATTCTGGGGGAGAACTCAATGTTCCACCGACACCGACGGAAAATTCACTTGTCTCACCGGAGATTGCGGATCTGGTACCCTCGAATGCTCCGGATCCGGAGCAACACCACCAGCAACACTAGCGGAATTCACACTAGACGGATCTAACGGACTCGATTTCTACGACGTTAGTCTCGTCGACGGTTACAACGTCCCGATGCTAGTGGCTCCACAAGGAGGCTCGGGTTTAAACTGTAGCAGCACCGGATGCGTTGTAGATCTGAACGGTTCGTGTCCGTCGGAGCTTAAAGTGACGAGTTTAGACGGCAGAGGTAAACAATCCATGGGATGTAAAAGCGCGTGTGAAGCTTTTCGTACGCCGGAGTATTGTTGCAGCGGCGCCCACGGTACACCTGACACGTGTAAACCGTCGTCGTACTCGTTGATGTTTAAAACTGCGTGTCCACGTGCTTACAGCTACGCTTACGATGATCAGAGTAGTACCTTCACATGTGCTGAATCTCCTAATTACGTTATCACGTTTTGCCCTACTCCTAACACCAGTCAAAAATCATCTCAAGATCAGAGCCCAGATCCCAAACCGACGACACCAACCGGGACGTCGTCGACAACTCCTGCCGGAGATAGTAGTACGACGTGGTCACCGGTAGATACATCAATGATATACGAAGGAGCTTTGGATCAAAACAAAGGATCACCGTCCACGTGTCATCTTTCGTTATGTGGAATCACAGTCACACTTGCGCTGGCCTTTTGTCGGATGTGGCGGCTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

330

Amino Acids

34.88

Weight (kDa)

4.96

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 248 1.9e-86 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 818
Acc65I GGTACC 1 cut(s) 290
AccB1I GGYRCC 2 cut(s) 290, 593
AccI GTMKAC 2 cut(s) 393, 821
AccII CGCG 1 cut(s) 554
AccIII TCCGGA 2 cut(s) 305, 311
AciI CCGC 4 cut(s) 282, 338, 591, 982
AclWI GGATC 7 cut(s) 292, 303, 316, 364, 782, 903, 916
AcsI RAATTY 2 cut(s) 257, 341
AcvI CACGTG 3 cut(s) 615, 662, 921
AcyI GRCGYC 2 cut(s) 594, 815
AfaI GTAC 6 cut(s) 292, 571, 604, 632, 697, 847
AfeI AGCGCT 1 cut(s) 193
AfiI CCNNNNNNNGG 3 cut(s) 152, 431, 972
AflIII ACRYGT 4 cut(s) 612, 614, 704, 920
AgeI ACCGGT 1 cut(s) 859
AjiI CACGTC 1 cut(s) 852
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 5 cut(s) 72, 499, 563, 672, 890
AluI AGCT 5 cut(s) 72, 499, 563, 672, 890
Alw26I GTCTC 2 cut(s) 272, 392
AlwI GGATC 7 cut(s) 292, 303, 316, 364, 782, 903, 916
Ama87I CYCGRG 1 cut(s) 436
Aor13HI TCCGGA 2 cut(s) 305, 311
Aor51HI AGCGCT 1 cut(s) 193
AoxI GGCC 2 cut(s) 107, 963
ApeKI GCWGC 2 cut(s) 453, 588
ApoI RAATTY 2 cut(s) 257, 341
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AsiGI ACCGGT 1 cut(s) 859
Asp700I GAANNNNTTC 1 cut(s) 564
Asp718I GGTACC 1 cut(s) 290
AspLEI GCGC 4 cut(s) 194, 554, 596, 961
AsuC2I CCSGG 1 cut(s) 811
AsuHPI GGTGA 4 cut(s) 94, 262, 849, 903
AvaI CYCGRG 1 cut(s) 436
BamHI GGATCC 1 cut(s) 308
BanI GGYRCC 2 cut(s) 290, 593
BanII GRGCYC 1 cut(s) 785
BbrPI CACGTG 3 cut(s) 615, 662, 921
BbvI GCAGC 2 cut(s) 465, 600
BceAI ACGGC 1 cut(s) 535
BciT130I CCWGG 1 cut(s) 111
BclI TGATCA 1 cut(s) 685
BcnI CCSGG 1 cut(s) 811
BcoDI GTCTC 2 cut(s) 272, 392
BfaI CTAG 3 cut(s) 335, 350, 416
BfmI CTRYAG 1 cut(s) 448
BfoI RGCGCY 2 cut(s) 195, 597
BglII AGATCT 1 cut(s) 472
BisI GCNGC 4 cut(s) 454, 589, 592, 983
BlsI GCNGC 4 cut(s) 455, 590, 593, 984
Bme1390I CCNGG 2 cut(s) 111, 811
BmeT110I CYCGRG 1 cut(s) 436
BmgBI CACGTC 1 cut(s) 852
BmiI GGNNCC 4 cut(s) 292, 310, 423, 595
BmrFI CCNGG 2 cut(s) 111, 811
BmsI GCATC 2 cut(s) 402, 452
BoxI GACNNNNGTC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 756
BpuMI CCSGG 1 cut(s) 811
BsaAI YACGTR 3 cut(s) 615, 662, 921
BsaHI GRCGYC 2 cut(s) 594, 815
BsaJI CCNNGG 2 cut(s) 537, 598
BsaWI WCCGGW 6 cut(s) 152, 272, 305, 311, 458, 859
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 431, 972
Bse118I RCCGGY 1 cut(s) 859
Bse1I ACTGG 1 cut(s) 756
BseAI TCCGGA 2 cut(s) 305, 311
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 537, 598
BseGI GGATG 3 cut(s) 467, 548, 981
BseLI CCNNNNNNNGG 3 cut(s) 152, 431, 972
BseNI ACTGG 1 cut(s) 756
BseXI GCAGC 2 cut(s) 465, 600
Bsh1236I CGCG 1 cut(s) 554
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 109, 965
BshNI GGYRCC 2 cut(s) 290, 593
BshTI ACCGGT 1 cut(s) 859
BsiEI CGRYCG 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 436
BsiWI CGTACG 1 cut(s) 569
BslFI GGGAC 2 cut(s) 392, 826
BslI CCNNNNNNNGG 3 cut(s) 152, 431, 972
BsmAI GTCTC 2 cut(s) 272, 392
BsmFI GGGAC 2 cut(s) 392, 826
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 2 cut(s) 109, 965
BsoBI CYCGRG 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 785
Bsp13I TCCGGA 2 cut(s) 305, 311
Bsp19I CCATGG 1 cut(s) 537
BspACI CCGC 4 cut(s) 282, 338, 591, 982
BspANI GGCC 2 cut(s) 109, 965
BspEI TCCGGA 2 cut(s) 305, 311
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 4 cut(s) 292, 310, 423, 595
BspPI GGATC 7 cut(s) 292, 303, 316, 364, 782, 903, 916
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 2 cut(s) 290, 593
BsrFI RCCGGY 1 cut(s) 859
BsrI ACTGG 1 cut(s) 756
BssAI RCCGGY 1 cut(s) 859
BssECI CCNNGG 2 cut(s) 537, 598
BssNI GRCGYC 2 cut(s) 594, 815
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 8 cut(s) 103, 398, 449, 482, 602, 624, 915, 949
Bst6I CTCTTC 1 cut(s) 12
BstACI GRCGYC 2 cut(s) 594, 815
BstAPI GCANNNNNTGC 1 cut(s) 462
BstBAI YACGTR 3 cut(s) 615, 662, 921
BstC8I GCNNGC 1 cut(s) 963
BstDSI CCRYGG 2 cut(s) 537, 598
BstEII GGTNACC 1 cut(s) 855
BstF5I GGATG 3 cut(s) 467, 548, 981
BstFNI CGCG 1 cut(s) 554
BstH2I RGCGCY 2 cut(s) 195, 597
BstHHI GCGC 4 cut(s) 194, 554, 596, 961
BstMAI GTCTC 2 cut(s) 272, 392
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 3 cut(s) 335, 462, 560
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 708
BstPAI GACNNNNGTC 1 cut(s) 384
BstPI GGTNACC 1 cut(s) 855
BstSCI CCNGG 2 cut(s) 109, 809
BstSFI CTRYAG 1 cut(s) 448
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 2 cut(s) 465, 600
BstX2I RGATCY 5 cut(s) 284, 308, 356, 472, 787
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 5 cut(s) 284, 308, 356, 472, 787
BsuRI GGCC 2 cut(s) 109, 965
BtgI CCRYGG 2 cut(s) 537, 598
BtrI CACGTC 1 cut(s) 852
BtsCI GGATG 3 cut(s) 467, 548, 981
Cac8I GCNNGC 1 cut(s) 963
CfoI GCGC 4 cut(s) 194, 554, 596, 961
Cfr10I RCCGGY 1 cut(s) 859
Csp6I GTAC 6 cut(s) 291, 570, 603, 631, 696, 846
CspAI ACCGGT 1 cut(s) 859
CviAII CATG 3 cut(s) 204, 538, 705
CviQI GTAC 6 cut(s) 291, 570, 603, 631, 696, 846
DinI GGCGCC 1 cut(s) 595
DraI TTTAAA 2 cut(s) 444, 646
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 537
Eco24I GRGCYC 1 cut(s) 785
Eco47III AGCGCT 1 cut(s) 193
Eco72I CACGTG 3 cut(s) 615, 662, 921
Eco88I CYCGRG 1 cut(s) 436
Eco91I GGTNACC 1 cut(s) 855
EcoO65I GGTNACC 1 cut(s) 855
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 537
EcoT38I GRGCYC 1 cut(s) 785
EgeI GGCGCC 1 cut(s) 595
EheI GGCGCC 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 3 cut(s) 207, 541, 708
FaiI YATR 6 cut(s) 80, 205, 539, 706, 880, 937
FaqI GGGAC 2 cut(s) 392, 826
FatI CATG 3 cut(s) 203, 537, 704
FbaI TGATCA 1 cut(s) 685
FblI GTMKAC 2 cut(s) 393, 821
Fnu4HI GCNGC 4 cut(s) 454, 589, 592, 983
FokI GGATG 3 cut(s) 474, 555, 988
FriOI GRGCYC 1 cut(s) 785
Fsp4HI GCNGC 4 cut(s) 454, 589, 592, 983
FspBI CTAG 3 cut(s) 335, 350, 416
GlaI GCGC 4 cut(s) 193, 553, 595, 960
GluI GCNGC 4 cut(s) 454, 589, 592, 983
GsuI CTGGAG 1 cut(s) 75
HaeII RGCGCY 2 cut(s) 195, 597
HaeIII GGCC 2 cut(s) 109, 965
HhaI GCGC 4 cut(s) 194, 554, 596, 961
Hin1I GRCGYC 2 cut(s) 594, 815
Hin1II CATG 3 cut(s) 207, 541, 708
Hin6I GCGC 4 cut(s) 192, 552, 594, 959
HinP1I GCGC 4 cut(s) 192, 552, 594, 959
HincII GTYRAC 2 cut(s) 394, 822
HindII GTYRAC 2 cut(s) 394, 822
HindIII AAGCTT 1 cut(s) 561
HinfI GANTC 5 cut(s) 156, 216, 366, 713, 942
HphI GGTGA 4 cut(s) 94, 262, 849, 903
Hpy166II GTNNAC 8 cut(s) 85, 394, 530, 605, 620, 659, 822, 918
Hpy188I TCNGA 6 cut(s) 147, 477, 496, 690, 780, 975
Hpy188III TCNNGA 5 cut(s) 54, 306, 312, 409, 773
Hpy8I GTNNAC 8 cut(s) 85, 394, 530, 605, 620, 659, 822, 918
HpyAV CCTTC 2 cut(s) 709, 878
HpyCH4III ACNGT 8 cut(s) 103, 398, 449, 482, 602, 624, 915, 949
HpyCH4IV ACGT 9 cut(s) 381, 405, 614, 661, 726, 734, 815, 851, 920
HpyCH4V TGCA 1 cut(s) 588
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 462, 560
HpySE526I ACGT 9 cut(s) 381, 405, 614, 661, 726, 734, 815, 851, 920
Hsp92I GRCGYC 2 cut(s) 594, 815
Hsp92II CATG 3 cut(s) 207, 541, 708
HspAI GCGC 4 cut(s) 192, 552, 594, 959
KasI GGCGCC 1 cut(s) 593
Kpn2I TCCGGA 2 cut(s) 305, 311
KpnI GGTACC 1 cut(s) 294
Ksp22I TGATCA 1 cut(s) 685
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 6 cut(s) 199, 308, 314, 427, 496, 887
Lsp1109I GCAGC 2 cut(s) 465, 600
LweI GCATC 2 cut(s) 402, 452
MaeI CTAG 3 cut(s) 335, 350, 416
MaeII ACGT 9 cut(s) 381, 405, 614, 661, 726, 734, 815, 851, 920
MaeIII GTNAC 4 cut(s) 398, 505, 855, 949
MboII GAAGA 4 cut(s) 16, 25, 188, 225
MflI RGATCY 5 cut(s) 284, 308, 356, 472, 787
MhlI GDGCHC 1 cut(s) 785
MluCI AATT 3 cut(s) 257, 341, 721
Mly113I GGCGCC 1 cut(s) 594
MlyI GAGTC 1 cut(s) 360
MmeI TCCRAC 4 cut(s) 170, 221, 474, 953
MnlI CCTC 4 cut(s) 203, 305, 425, 518
MroI TCCGGA 2 cut(s) 305, 311
MroXI GAANNNNTTC 1 cut(s) 564
MseI TTAA 3 cut(s) 443, 501, 645
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 591
MspR9I CCNGG 2 cut(s) 111, 811
MssI GTTTAAAC 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 3 cut(s) 335, 462, 560
NarI GGCGCC 1 cut(s) 594
NciI CCSGG 1 cut(s) 811
NcoI CCATGG 1 cut(s) 537
NlaIII CATG 3 cut(s) 207, 541, 708
NlaIV GGNNCC 4 cut(s) 292, 310, 423, 595
NmuCI GTSAC 3 cut(s) 505, 855, 949
NspI RCATGY 1 cut(s) 708
PciI ACATGT 1 cut(s) 704
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 5 cut(s) 375, 387, 402, 620, 632
PctI GAATGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 564
PfeI GAWTC 4 cut(s) 156, 216, 713, 942
Pfl23II CGTACG 1 cut(s) 569
PflFI GACNNNGTC 2 cut(s) 817, 853
PinAI ACCGGT 1 cut(s) 859
PkrI GCNGC 4 cut(s) 455, 590, 593, 984
PleI GAGTC 1 cut(s) 360
PluTI GGCGCC 1 cut(s) 597
PmaCI CACGTG 3 cut(s) 615, 662, 921
PmeI GTTTAAAC 1 cut(s) 444
PmlI CACGTG 3 cut(s) 615, 662, 921
PpsI GAGTC 1 cut(s) 360
Ppu21I YACGTR 3 cut(s) 615, 662, 921
PscI ACATGT 1 cut(s) 704
PshAI GACNNNNGTC 1 cut(s) 384
Psp6I CCWGG 1 cut(s) 109
PspCI CACGTG 3 cut(s) 615, 662, 921
PspEI GGTNACC 1 cut(s) 855
PspGI CCWGG 1 cut(s) 109
PspLI CGTACG 1 cut(s) 569
PspN4I GGNNCC 4 cut(s) 292, 310, 423, 595
PsuI RGATCY 5 cut(s) 284, 308, 356, 472, 787
PsyI GACNNNGTC 2 cut(s) 817, 853
RsaI GTAC 6 cut(s) 292, 571, 604, 632, 697, 847
RsaNI GTAC 6 cut(s) 291, 570, 603, 631, 696, 846
RseI CAYNNNNRTG 1 cut(s) 80
SalI GTCGAC 2 cut(s) 392, 820
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 3 cut(s) 443, 501, 645
SatI GCNGC 4 cut(s) 454, 589, 592, 983
SchI GAGTC 1 cut(s) 360
ScrFI CCNGG 2 cut(s) 111, 811
SduI GDGCHC 1 cut(s) 785
SfaNI GCATC 2 cut(s) 402, 452
SfcI CTRYAG 1 cut(s) 448
SfoI GGCGCC 1 cut(s) 595
SgrDI CGTCGACG 1 cut(s) 392
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 771
SmoI CTYRAG 1 cut(s) 771
Sse9I AATT 3 cut(s) 257, 341, 721
SsiI CCGC 4 cut(s) 282, 338, 591, 982
SspDI GGCGCC 1 cut(s) 593
SspMI CTAG 3 cut(s) 335, 350, 416
StyD4I CCNGG 2 cut(s) 109, 809
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 8 cut(s) 103, 398, 449, 482, 602, 624, 915, 949
TaiI ACGT 9 cut(s) 384, 408, 617, 664, 729, 737, 818, 854, 923
TaqI TCGA 4 cut(s) 297, 369, 393, 821
TasI AATT 3 cut(s) 257, 341, 721
TauI GCSGC 2 cut(s) 594, 985
TfiI GAWTC 4 cut(s) 156, 216, 713, 942
Tru1I TTAA 3 cut(s) 443, 501, 645
Tru9I TTAA 3 cut(s) 443, 501, 645
TseFI GTSAC 3 cut(s) 505, 855, 949
TseI GCWGC 2 cut(s) 453, 588
Tsp45I GTSAC 3 cut(s) 505, 855, 949
TspDTI ATGAA 2 cut(s) 64, 192
TspGWI ACGGA 4 cut(s) 267, 369, 378, 480
Tth111I GACNNNGTC 2 cut(s) 817, 853
XapI RAATTY 2 cut(s) 257, 341
XceI RCATGY 1 cut(s) 708
XmiI GTMKAC 2 cut(s) 393, 821
XmnI GAANNNNTTC 1 cut(s) 564
XspI CTAG 3 cut(s) 335, 350, 416
ZraI GACGTC 1 cut(s) 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.